Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003844

Physical Location & Seq

Genomic Coordinates Reverse (-)

6318794 .. 6319627

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGACTTCGGTGAAAGTGTACGGACCACCGATATCCACGGCCGTGTCGAGAGTGTTGGCCTGTCTCCATGAGAAAGAAGTGCCCTATCAGCTCATTCCGGTCAACATGGCCAAAGGAGAGCACAAGAAGCCTGAATACCTCAAGATGCAGCCATTTGGACAAGTGCCAGCTTTTGAAGACGAGGGCTTCGCCCTTTTCGAATCGAGGTCCATATGCCGGTACATATGTGAGAAGTATGCAAAGCAGGGAAACAAGGGATTGTATGGGGAAAACCCATTGGCAAAGGCCTCCATAGATCAGTGGCTAGAAGCTGAATCACATAGCTTCAGTCCTCCAAGCTCCGTTCTGGTGTTTCAGCTTGCATTCGCACCGAGAATGAAGCTGAAGCAGGATCAAGGGGCGATCAGGCAGAACGAAGAGAAGCTGAAGAAGGTGCTGGACGTGTACGAAGAGAGGCTGGGTGAGAGCCGGTTCTTGGCGGGCGACGAATTCACTCTGGCTGACCTTTCTCACTTGCCCAACACACACTACTTGGTGAATTCCACCGATATGGGAGAGCAGTTCACTGAGAGAGACAATGTGGGCAGGTGGTGGTCCGAGATATCTAGCCGAGAATCGTGGCAGAAGGTGGTTGACATGCAGAAGCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010319 GO:0016020 GO:0016740 GO:0016765 GO:0019748 GO:0031090 GO:0031967 GO:0031975 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0071704 GO:0072341 GO:0080167 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:1900750 GO:1901564 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

219

Amino Acids

24.83

Weight (kDa)

6.01

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 76	1.7e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 82	1.5e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 78	6.9e-16	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	126 - 206	3e-11	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	135 - 198	2.5e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07860 AT3G07860 AT3G07860
malus_domestica	MD08G1006500.v1.1 MD08G1006600.v1.1
prunus_persica	Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358500_v2.0.a1
pyrus_communis	pycom08g00500 pycom08g00510 pycom15g00430
rosa_chinensis	RchiOBHm_Chr6g0303771 RchiOBHm_Chr6g0303781
rosa_laevigata	RLG00000011044 RLG00000011045
rosa_multiflora	Rmu_co8472743.1_g000001 Rmu_sc0012878.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164410 Rroxscaffold_7G00164420
rosa_rugosa	Rorug06G0324700 Rorug06G0324700
rosa_samantha	Rh6AG439000 Rh6AG439100 Rh6BG463900 Rh6BG464000 Rh6CG451300 Rh6CG451400 Rh6DG438200 Rh6DG438300
rosa_wichuraiana	Rw6G038010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	579
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	2 cut(s)	42, 111
AcsI	RAATTY	2 cut(s)	491, 541
AcuI	CTGAAG	3 cut(s)	313, 407, 449
AfaI	GTAC	3 cut(s)	23, 224, 449
AfiI	CCNNNNNNNGG	2 cut(s)	219, 478
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	445
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	8 cut(s)	94, 173, 314, 327, 342, 361, 385, 427
AluI	AGCT	8 cut(s)	94, 173, 314, 327, 342, 361, 385, 427
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	71, 570
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	4 cut(s)	42, 60, 111, 288
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	2 cut(s)	491, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspS9I	GGNCC	3 cut(s)	26, 210, 597
AsuHPI	GGTGA	3 cut(s)	25, 476, 550
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	3 cut(s)	26, 210, 597
BaeGI	GKGCMC	1 cut(s)	87
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BalI	TGGCCA	1 cut(s)	113
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	2 cut(s)	29, 57
BcoDI	GTCTC	2 cut(s)	71, 570
BfaI	CTAG	2 cut(s)	308, 609
BfuAI	ACCTGC	1 cut(s)	579
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme18I	GGWCC	3 cut(s)	26, 210, 597
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	3 cut(s)	26, 210, 597
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 478
Bse118I	RCCGGY	2 cut(s)	219, 471
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	219, 478
BseMII	CTCAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	44, 62, 113, 290
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	101, 220, 472
BslI	CCNNNNNNNGG	2 cut(s)	219, 478
BsmAI	GTCTC	2 cut(s)	71, 570
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	44, 62, 113, 290
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	87, 126
Bsp143I	GATC	3 cut(s)	298, 394, 405
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	4 cut(s)	44, 62, 113, 290
BspCNI	CTCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	219, 471
BssAI	RCCGGY	2 cut(s)	219, 471
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	3 cut(s)	298, 394, 405
Bst6I	CTCTTC	2 cut(s)	414, 447
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	4 cut(s)	171, 363, 484, 651
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	1 cut(s)	39
BstKTI	GATC	3 cut(s)	301, 397, 408
BstMAI	GTCTC	2 cut(s)	71, 570
BstMBI	GATC	3 cut(s)	298, 394, 405
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 130
BstNSI	RCATGY	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	4 cut(s)	44, 62, 113, 290
BtgI	CCRYGG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	308, 567
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	4 cut(s)	171, 363, 484, 651
Cfr10I	RCCGGY	2 cut(s)	219, 471
Cfr13I	GGNCC	3 cut(s)	26, 210, 597
Csp6I	GTAC	3 cut(s)	22, 223, 448
CviAII	CATG	3 cut(s)	71, 109, 640
CviQI	GTAC	3 cut(s)	22, 223, 448
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	3 cut(s)	300, 396, 407
DpnII	GATC	3 cut(s)	298, 394, 405
EaeI	YGGCCR	2 cut(s)	42, 111
EagI	CGGCCG	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	414, 447
EarI	CTCTTC	2 cut(s)	414, 447
EclXI	CGGCCG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	290
Eco32I	GATATC	2 cut(s)	36, 606
Eco47I	GGWCC	3 cut(s)	26, 210, 597
Eco52I	CGGCCG	1 cut(s)	42
Eco57I	CTGAAG	3 cut(s)	313, 407, 449
EcoRI	GAATTC	2 cut(s)	491, 541
EcoRV	GATATC	2 cut(s)	36, 606
FaeI	CATG	3 cut(s)	74, 112, 643
FatI	CATG	3 cut(s)	70, 108, 639
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	2 cut(s)	215, 227
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	2 cut(s)	308, 609
GluI	GCNGC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	464
HaeIII	GGCC	4 cut(s)	44, 62, 113, 290
HapII	CCGG	3 cut(s)	101, 220, 472
Hin1II	CATG	3 cut(s)	74, 112, 643
HincII	GTYRAC	2 cut(s)	106, 637
HindII	GTYRAC	2 cut(s)	106, 637
HinfI	GANTC	3 cut(s)	203, 317, 617
HpaII	CCGG	3 cut(s)	101, 220, 472
HphI	GGTGA	3 cut(s)	25, 476, 550
Hpy166II	GTNNAC	5 cut(s)	22, 106, 448, 567, 637
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	2 cut(s)	51, 145
Hpy8I	GTNNAC	5 cut(s)	22, 106, 448, 567, 637
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	2 cut(s)	427, 622
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	4 cut(s)	151, 242, 365, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 130
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	74, 112, 643
Kzo9I	GATC	3 cut(s)	298, 394, 405
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	308, 609
MaeII	ACGT	1 cut(s)	444
MalI	GATC	3 cut(s)	300, 396, 407
MboI	GATC	3 cut(s)	298, 394, 405
MboII	GAAGA	4 cut(s)	191, 431, 442, 464
MhlI	GDGCHC	2 cut(s)	87, 126
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	491, 541
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	6 cut(s)	152, 178, 201, 301, 345, 450
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MslI	CAYNNNNRTG	2 cut(s)	44, 551
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	3 cut(s)	101, 220, 472
Mva1269I	GAATGC	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	91, 130
NdeI	CATATG	2 cut(s)	215, 227
NdeII	GATC	3 cut(s)	298, 394, 405
NlaIII	CATG	3 cut(s)	74, 112, 643
NmeAIII	GCCGAG	1 cut(s)	638
NspI	RCATGY	1 cut(s)	643
NspV	TTCGAA	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	579
PceI	AGGCCT	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 198
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	203, 317, 617
PkrI	GCNGC	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	26, 210, 597
RsaI	GTAC	3 cut(s)	23, 224, 449
RsaNI	GTAC	3 cut(s)	22, 223, 448
RseI	CAYNNNNRTG	2 cut(s)	44, 551
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	3 cut(s)	298, 394, 405
Sau96I	GGNCC	3 cut(s)	26, 210, 597
SduI	GDGCHC	2 cut(s)	87, 126
SfaNI	GCATC	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	3 cut(s)	26, 210, 597
SmiMI	CAYNNNNRTG	2 cut(s)	44, 551
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	491, 541
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	2 cut(s)	308, 609
StuI	AGGCCT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	50, 201, 206
TasI	AATT	2 cut(s)	491, 541
TfiI	GAWTC	3 cut(s)	203, 317, 617
TscAI	CASTG	2 cut(s)	308, 574
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	2 cut(s)	39, 334
TspRI	CASTG	2 cut(s)	308, 574
VpaK11BI	GGWCC	3 cut(s)	26, 210, 597
XapI	RAATTY	2 cut(s)	491, 541
XceI	RCATGY	1 cut(s)	643
XspI	CTAG	2 cut(s)	308, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.