Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003844

Physical Location & Seq

Genomic Coordinates Reverse (-)

33150279 .. 33154783

Gene Structure 4505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G358400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAAATCCAGTGTGGCAGCGAGAGCACGACAGACCTAAAAAAACAGATGCAGAGAATGGAGATGATGGAGGATGAGTGTAATAGGAATAGGAAGGGGGAGGTTAGCGTGGAAGAAGGATATAGAGAAAACAAGATAAAGAAAGCAAGGCTGCAGTCGACGCTGGTTGCCCTTGTGGATGATCCTATACTCTCCGACGTTCCCAAAAACCCAACCTTATCCGATGTCGACACCCTCATCTGCCTCGAATTGGGCAGCGCCATGCGCATCTCTGTCCTCAAGCTCGACGCCACCGCTTTCGATGTGGCGCTCATGAATTCTGCTACGGTCAAGGACCTTAAAGTTGCAATAAAAAAGAAAATCAACGACATGGAGCAATCCAAGATGGGTCACCGACACATTTCATGGAAGCACGTGTGGGGGAATTTTTGCCTCTCATACCATAATGACAAGCTACTTGATGACAATGCTGCACTTCAGGATTTTGGCGTACGCAACAATTCTCAGGTGTGCATTTTGTTCCTTATGTTGCGCTCAAGGATTCGCATAGGCATTCGAAGAGGAGGAGACACCGCTTCTTTCATGGCCTTAGCAAGCTTTCTTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.91

Weight (kDa)

7.64

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07860 AT3G07860 AT3G07860
malus_domestica	MD08G1006500.v1.1 MD08G1006600.v1.1
prunus_persica	Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358500_v2.0.a1
pyrus_communis	pycom08g00500 pycom08g00510 pycom15g00430
rosa_chinensis	RchiOBHm_Chr6g0303771 RchiOBHm_Chr6g0303781
rosa_laevigata	RLG00000011044 RLG00000011045
rosa_multiflora	Rmu_co8472743.1_g000001 Rmu_sc0012878.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164410 Rroxscaffold_7G00164420
rosa_rugosa	Rorug06G0324700 Rorug06G0324700
rosa_samantha	Rh6AG439000 Rh6AG439100 Rh6BG463900 Rh6BG464000 Rh6CG451300 Rh6CG451400 Rh6DG438200 Rh6DG438300
rosa_wichuraiana	Rw6G038010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
AccI	GTMKAC	2 cut(s)	158, 228
AciI	CCGC	2 cut(s)	294, 573
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	316, 424
AcuI	CTGAAG	1 cut(s)	461
AcvI	CACGTG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	414
AluBI	AGCT	3 cut(s)	283, 454, 597
AluI	AGCT	3 cut(s)	283, 454, 597
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	4 cut(s)	18, 151, 255, 470
ApoI	RAATTY	2 cut(s)	316, 424
AspLEI	GCGC	4 cut(s)	260, 267, 310, 534
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	334
BbrPI	CACGTG	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	30, 138, 267, 457
BccI	CCATC	2 cut(s)	61, 379
BcoDI	GTCTC	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	152
BfoI	RGCGCY	2 cut(s)	261, 311
BisI	GCNGC	4 cut(s)	19, 152, 256, 471
BlsI	GCNGC	4 cut(s)	20, 153, 257, 472
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmsI	GCATC	3 cut(s)	39, 276, 595
Bpu10I	CCTNAGC	1 cut(s)	589
Bpu14I	TTCGAA	1 cut(s)	556
BpuEI	CTTGAG	2 cut(s)	263, 520
BsaAI	YACGTR	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	79, 184
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	576, 579
BseXI	GCAGC	4 cut(s)	30, 138, 267, 457
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	29
BsiWI	CGTACG	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	294, 573
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	1 cut(s)	517
BspHI	TCATGA	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	553
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	2 cut(s)	504, 589
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	79, 184
BstH2I	RGCGCY	2 cut(s)	261, 311
BstHHI	GCGC	4 cut(s)	260, 267, 310, 534
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 160, 264
BstPI	GGTNACC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	4 cut(s)	30, 138, 267, 457
BsuRI	GGCC	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	79, 184
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	595
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	4 cut(s)	260, 267, 310, 534
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	2 cut(s)	169, 296
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	5 cut(s)	262, 313, 370, 405, 583
CviJI	RGCY	5 cut(s)	151, 283, 454, 587, 597
CviKI_1	RGCY	5 cut(s)	151, 283, 454, 587, 597
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	504, 589
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	461
Eco72I	CACGTG	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	316
FaeI	CATG	5 cut(s)	265, 316, 373, 408, 586
FatI	CATG	5 cut(s)	261, 312, 369, 404, 582
FblI	GTMKAC	2 cut(s)	158, 228
Fnu4HI	GCNGC	4 cut(s)	19, 152, 256, 471
FokI	GGATG	2 cut(s)	86, 191
Fsp4HI	GCNGC	4 cut(s)	19, 152, 256, 471
FspAI	RTGCGCAY	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	4 cut(s)	259, 266, 309, 533
GluI	GCNGC	4 cut(s)	19, 152, 256, 471
HaeII	RGCGCY	2 cut(s)	261, 311
HaeIII	GGCC	1 cut(s)	587
HgaI	GACGC	2 cut(s)	169, 296
HhaI	GCGC	4 cut(s)	260, 267, 310, 534
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	265, 316, 373, 408, 586
Hin6I	GCGC	4 cut(s)	258, 265, 308, 532
HinP1I	GCGC	4 cut(s)	258, 265, 308, 532
HincII	GTYRAC	2 cut(s)	159, 229
HindII	GTYRAC	2 cut(s)	159, 229
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	1 cut(s)	541
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	159, 229
Hpy188I	TCNGA	2 cut(s)	196, 223
Hpy188III	TCNNGA	3 cut(s)	313, 479, 602
Hpy8I	GTNNAC	2 cut(s)	159, 229
Hpy99I	CGWCG	3 cut(s)	163, 200, 290
HpyAV	CCTTC	2 cut(s)	88, 110
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	198, 414
HpyCH4V	TGCA	5 cut(s)	52, 154, 347, 473, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 160, 264
HpyF3I	CTNAG	2 cut(s)	504, 589
HpySE526I	ACGT	2 cut(s)	198, 414
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	265, 316, 373, 408, 586
HspAI	GCGC	4 cut(s)	258, 265, 308, 532
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	4 cut(s)	23, 149, 464, 491
Lsp1109I	GCAGC	4 cut(s)	30, 138, 267, 457
LweI	GCATC	3 cut(s)	39, 276, 595
MaeII	ACGT	2 cut(s)	198, 414
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	125, 570
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	4 cut(s)	248, 316, 424, 499
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	64, 94, 245, 254, 287, 443, 554, 557
MseI	TTAA	2 cut(s)	339, 610
Mva1269I	GAATGC	1 cut(s)	552
MwoI	GCNNNNNNNGC	3 cut(s)	24, 160, 264
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	5 cut(s)	265, 316, 373, 408, 586
NmuCI	GTSAC	1 cut(s)	389
NsbI	TGCGCA	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	556
PagI	TCATGA	1 cut(s)	312
PctI	GAATGC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	541
Pfl23II	CGTACG	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	20, 153, 257, 472
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	415
PspEI	GGTNACC	1 cut(s)	389
PspLI	CGTACG	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	334
PspPPI	RGGWCCY	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
SalI	GTCGAC	2 cut(s)	157, 227
SaqAI	TTAA	2 cut(s)	339, 610
SatI	GCNGC	4 cut(s)	19, 152, 256, 471
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	39, 276, 595
SfcI	CTRYAG	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	556
SinI	GGWCC	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	278, 535
SmoI	CTYRAG	2 cut(s)	278, 535
Sse9I	AATT	4 cut(s)	248, 316, 424, 499
SsiI	CCGC	2 cut(s)	294, 573
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	201, 417
TaqI	TCGA	6 cut(s)	158, 228, 246, 285, 300, 556
TasI	AATT	4 cut(s)	248, 316, 424, 499
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	2 cut(s)	339, 610
Tru9I	TTAA	2 cut(s)	339, 610
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	4 cut(s)	18, 151, 255, 470
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	329, 393, 571
TspRI	CASTG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	316, 424
XmiI	GTMKAC	2 cut(s)	158, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.