Rh6DG438300

U11 U12 small nuclear ribonucleoprotein 25 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003844
Physical Location & Seq
Forward (+)
61531888 .. 61533021
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG438300.1

Sequence Viewer

Length: 594 bp
ATGACCGAGACTGAACAGAAGAGCAACATCAACATGGAGTCCAAAACGACGCCGGAAGCTAGCGTTAGCTTGGAAGGATACAAGGAAAGCAACATAAAGAAAGCAAGGCTACAGTCAACGCTGGCCGCCCTCTTGGAAGATCCCATCCTTTCCGACGTCCCCAAAAAACCGACCTTATCGGATGTCGACACTCTCCTCAGCCTCGAATTCGGCAGCGCCATGCGCATCAATGTCGTCAAGCTTGACGCCACCTCTTTGGATGTGGCGCTCATGAACTCTGCTACGGTCAAGGATCTCAAGCTTGCGATAAAAAAGAAAGTCAACGAAATGGAGCAGTCCAAGATGGGTCACCGCCACATTTCATGGAAGCATGTGTGGGGGAATTTTTGCCTGTCATACCACAATGAGAAGTTGCTGGATGACAATGCTGCAGTTGAGGAGTATGGCATTCGCAACAATTCTCAGGCCATTGCTGCTATTATAACAAATCTTGTGAGCTACATCAATGGTAATCCTTCCATTGCCTACGTCCTCAATGCAATTCCTATGAATATCCTGCAAATCGTTGCAGTCCCTATTCCTCCGCTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.72

Weight (kDa)

6.09

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 74 - 155 2.6e-29 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AatII GACGTC 1 cut(s) 159
Acc16I TGCGCA 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 186
AciI CCGC 3 cut(s) 126, 352, 584
AclWI GGATC 2 cut(s) 134, 300
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 2 cut(s) 206, 382
AcyI GRCGYC 3 cut(s) 50, 156, 246
AluBI AGCT 5 cut(s) 59, 69, 241, 301, 498
AluI AGCT 5 cut(s) 59, 69, 241, 301, 498
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 134, 300
AoxI GGCC 2 cut(s) 123, 465
ApeKI GCWGC 3 cut(s) 213, 428, 473
ApoI RAATTY 2 cut(s) 206, 382
AspLEI GCGC 3 cut(s) 218, 225, 268
AsuHPI GGTGA 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 59
BbvCI CCTCAGC 1 cut(s) 197
BbvI GCAGC 3 cut(s) 225, 415, 460
BccI CCATC 2 cut(s) 152, 337
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciVI GTATCC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 110, 429
BfoI RGCGCY 2 cut(s) 219, 269
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 4 cut(s) 126, 214, 429, 474
BlsI GCNGC 4 cut(s) 127, 215, 430, 475
BmsI GCATC 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 281
BsaHI GRCGYC 3 cut(s) 50, 156, 246
Bse3DI GCAATG 2 cut(s) 468, 519
BseGI GGATG 4 cut(s) 144, 187, 265, 424
BseMI GCAATG 2 cut(s) 468, 519
BseMII CTCAG 2 cut(s) 211, 476
BseRI GAGGAG 2 cut(s) 185, 452
BseXI GCAGC 3 cut(s) 225, 415, 460
BshFI GGCC 2 cut(s) 125, 467
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 2 cut(s) 143, 557
BsmAI GTCTC 1 cut(s) 2
BsmFI GGGAC 2 cut(s) 143, 557
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 2 cut(s) 125, 467
Bsp143I GATC 2 cut(s) 139, 292
BspACI CCGC 3 cut(s) 126, 352, 584
BspANI GGCC 2 cut(s) 125, 467
BspCNI CTCAG 2 cut(s) 210, 475
BspHI TCATGA 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 433
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 2 cut(s) 134, 300
BspQI GCTCTTC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 586
BsrDI GCAATG 2 cut(s) 468, 519
BssMI GATC 2 cut(s) 139, 292
BssNI GRCGYC 3 cut(s) 50, 156, 246
Bst4CI ACNGT 2 cut(s) 114, 286
Bst6I CTCTTC 1 cut(s) 14
BstACI GRCGYC 3 cut(s) 50, 156, 246
BstC8I GCNNGC 3 cut(s) 61, 123, 303
BstDEI CTNAG 2 cut(s) 197, 462
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 4 cut(s) 144, 187, 265, 424
BstH2I RGCGCY 2 cut(s) 219, 269
BstHHI GCGC 3 cut(s) 218, 225, 268
BstKTI GATC 2 cut(s) 142, 295
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 139, 292
BstMWI GCNNNNNNNGC 2 cut(s) 222, 473
BstNSI RCATGY 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 347
BstSFI CTRYAG 2 cut(s) 110, 429
BstV1I GCAGC 3 cut(s) 225, 415, 460
BstX2I RGATCY 2 cut(s) 139, 292
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 2 cut(s) 139, 292
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 125, 467
BtsCI GGATG 4 cut(s) 144, 187, 265, 424
Cac8I GCNNGC 3 cut(s) 61, 123, 303
CciI TCATGA 1 cut(s) 270
CfoI GCGC 3 cut(s) 218, 225, 268
CseI GACGC 2 cut(s) 58, 254
CviAII CATG 6 cut(s) 34, 220, 271, 363, 371, 591
CviJI RGCY 9 cut(s) 59, 69, 109, 125, 201, 241, 301, 467, 498
CviKI_1 RGCY 9 cut(s) 59, 69, 109, 125, 201, 241, 301, 467, 498
DdeI CTNAG 2 cut(s) 197, 462
DpnI GATC 2 cut(s) 141, 294
DpnII GATC 2 cut(s) 139, 292
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 206
FaeI CATG 6 cut(s) 37, 223, 274, 366, 374, 594
FaqI GGGAC 2 cut(s) 143, 557
FatI CATG 6 cut(s) 33, 219, 270, 362, 370, 590
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 4 cut(s) 126, 214, 429, 474
FokI GGATG 4 cut(s) 131, 194, 272, 431
Fsp4HI GCNGC 4 cut(s) 126, 214, 429, 474
FspAI RTGCGCAY 1 cut(s) 224
FspBI CTAG 1 cut(s) 60
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 3 cut(s) 217, 224, 267
GluI GCNGC 4 cut(s) 126, 214, 429, 474
HaeII RGCGCY 2 cut(s) 219, 269
HaeIII GGCC 2 cut(s) 125, 467
HapII CCGG 1 cut(s) 53
HgaI GACGC 2 cut(s) 58, 254
HhaI GCGC 3 cut(s) 218, 225, 268
Hin1I GRCGYC 3 cut(s) 50, 156, 246
Hin1II CATG 6 cut(s) 37, 223, 274, 366, 374, 594
Hin6I GCGC 3 cut(s) 216, 223, 266
HinP1I GCGC 3 cut(s) 216, 223, 266
HincII GTYRAC 3 cut(s) 117, 187, 322
HindII GTYRAC 3 cut(s) 117, 187, 322
HindIII AAGCTT 2 cut(s) 239, 299
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 3 cut(s) 117, 187, 322
Hpy188I TCNGA 2 cut(s) 154, 181
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 3 cut(s) 117, 187, 322
Hpy99I CGWCG 2 cut(s) 52, 158
HpyAV CCTTC 2 cut(s) 68, 525
HpyCH4III ACNGT 2 cut(s) 114, 286
HpyCH4IV ACGT 2 cut(s) 156, 528
HpyCH4V TGCA 4 cut(s) 431, 539, 559, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 473
HpyF3I CTNAG 2 cut(s) 197, 462
HpySE526I ACGT 2 cut(s) 156, 528
Hsp92I GRCGYC 3 cut(s) 50, 156, 246
Hsp92II CATG 6 cut(s) 37, 223, 274, 366, 374, 594
HspAI GCGC 3 cut(s) 216, 223, 266
Kzo9I GATC 2 cut(s) 139, 292
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 6 cut(s) 66, 107, 401, 404, 449, 569
Lsp1109I GCAGC 3 cut(s) 225, 415, 460
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 60
MaeII ACGT 2 cut(s) 156, 528
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 141, 294
MbiI CCGCTC 1 cut(s) 586
MboI GATC 2 cut(s) 139, 292
MboII GAAGA 2 cut(s) 31, 149
MflI RGATCY 2 cut(s) 139, 292
MluCI AATT 4 cut(s) 206, 382, 457, 540
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 7 cut(s) 140, 206, 212, 262, 430, 542, 591
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 222, 473
NdeII GATC 2 cut(s) 139, 292
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 6 cut(s) 37, 223, 274, 366, 374, 594
NmuCI GTSAC 1 cut(s) 347
NsbI TGCGCA 1 cut(s) 224
NspI RCATGY 1 cut(s) 374
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 447
PkrI GCNGC 4 cut(s) 127, 215, 430, 475
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PsiI TTATAA 1 cut(s) 482
PspEI GGTNACC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 2 cut(s) 139, 292
RseI CAYNNNNRTG 1 cut(s) 32
SalI GTCGAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 14
SatI GCNGC 4 cut(s) 126, 214, 429, 474
Sau3AI GATC 2 cut(s) 139, 292
SchI GAGTC 1 cut(s) 47
SetI ASST 9 cut(s) 61, 71, 159, 176, 243, 254, 303, 500, 531
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 2 cut(s) 110, 429
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 4 cut(s) 206, 382, 457, 540
SsiI CCGC 3 cut(s) 126, 352, 584
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 114, 286
TaiI ACGT 2 cut(s) 159, 531
TaqI TCGA 2 cut(s) 186, 204
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 206, 382, 457, 540
TauI GCSGC 1 cut(s) 128
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 3 cut(s) 213, 428, 473
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 287, 351, 563
XapI RAATTY 2 cut(s) 206, 382
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 60
ZraI GACGTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.