Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003844

Physical Location & Seq

Genomic Coordinates Reverse (-)

453769 .. 454646

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGACTCCGGTTAAGGTGTACGGACCACCGTTATCAACGGCGGTGTCAAGAGTGTTGGCCTGTCTCCATGAGAAAGGGGTGGACTATCAGCTCATTTCCGTCAACATGGCCAAAGGCGAGCACAAGAAGCCCGACTACCTCAAGATTCAGCCATTCGGACAAGTACCAGCTTTTGAAGACGAAGACATCTCCCTCTTCGAATCCAGAGCCATATGCCGGTACATATGTAACAAGTATGTAGATAAGGGAAACAAGGGTTTGTACGGTATGAATCCATTGGCAAAGGCCTCAATAGATCAGTGGCTGGAGGCCGAAGGGCAGAGCTTCAGCCCTCCGAGCTCAACGCTGGTGTTTCAGCTTGCGTTCGCGCCGAGAATGAAGCTGAAGCAAGACGAGGGAGCGATAAGGCAGAATGAAGAGAAGTTTGCCAAGGTGCTGGATGTGTACGAAAAGAGGCTGGGGGAGAGCCGGTTCTTGGCGGGGGATGAATTCTCGCTGGCTGATCTGTCGCACTTGCCCAACACGCAGTACCTGGTGAATGCCACGGACAGGGGAGAGCTGATTACTTCGAGAGAGAATGTGGGAAGGTGGTGGTCTGAGATATCGAGCCGGGAATCGTGGCAGAAGGTGGTTGAGATGCAAAAGCCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N

Protein Analysis

219

Amino Acids

24.67

Weight (kDa)

6.34

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07860 AT3G07860 AT3G07860
malus_domestica	MD08G1006500.v1.1 MD08G1006600.v1.1
prunus_persica	Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358500_v2.0.a1
pyrus_communis	pycom08g00500 pycom08g00510 pycom15g00430
rosa_chinensis	RchiOBHm_Chr6g0303771 RchiOBHm_Chr6g0303781
rosa_laevigata	RLG00000011044 RLG00000011045
rosa_multiflora	Rmu_co8472743.1_g000001 Rmu_sc0012878.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164410 Rroxscaffold_7G00164420
rosa_rugosa	Rorug06G0324700 Rorug06G0324700
rosa_samantha	Rh6AG439000 Rh6AG439100 Rh6BG463900 Rh6BG464000 Rh6CG451300 Rh6CG451400 Rh6DG438200 Rh6DG438300
rosa_wichuraiana	Rw6G038010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	371
AciI	CCGC	2 cut(s)	44, 482
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	2 cut(s)	313, 407
AfaI	GTAC	6 cut(s)	23, 168, 224, 266, 449, 533
AfiI	CCNNNNNNNGG	3 cut(s)	219, 478, 552
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	458, 490
AluBI	AGCT	7 cut(s)	94, 173, 327, 342, 361, 385, 562
AluI	AGCT	7 cut(s)	94, 173, 327, 342, 361, 385, 562
Alw21I	GWGCWC	2 cut(s)	126, 344
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	2 cut(s)	307, 535
AoxI	GGCC	4 cut(s)	60, 111, 288, 312
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	2 cut(s)	186, 192
Bbv12I	GWGCWC	2 cut(s)	126, 344
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	536, 614
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	536, 614
BmsI	GCATC	1 cut(s)	630
BpiI	GAAGAC	2 cut(s)	186, 192
BpmI	CTGGAG	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	432, 546
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 478, 552
Bse118I	RCCGGY	2 cut(s)	219, 471
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	2 cut(s)	432, 546
BseGI	GGATG	2 cut(s)	448, 493
BseLI	CCNNNNNNNGG	3 cut(s)	219, 478, 552
BseMII	CTCAG	1 cut(s)	591
BseYI	CCCAGC	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	4 cut(s)	62, 113, 290, 314
BsiHKAI	GWGCWC	2 cut(s)	126, 344
BsiSI	CCGG	4 cut(s)	11, 220, 472, 613
BslI	CCNNNNNNNGG	3 cut(s)	219, 478, 552
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	4 cut(s)	62, 113, 290, 314
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	126, 344
Bsp143I	GATC	2 cut(s)	298, 505
BspACI	CCGC	2 cut(s)	44, 482
BspANI	GGCC	4 cut(s)	62, 113, 290, 314
BspCNI	CTCAG	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	219, 471
BssAI	RCCGGY	2 cut(s)	219, 471
BssECI	CCNNGG	2 cut(s)	432, 546
BssMI	GATC	2 cut(s)	298, 505
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	33, 269
Bst6I	CTCTTC	2 cut(s)	203, 414
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	122, 363, 501
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	448, 493
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	2 cut(s)	301, 508
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	298, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 339, 526
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	534, 612
BstUI	CGCG	1 cut(s)	371
BstV2I	GAAGAC	2 cut(s)	186, 192
BstXI	CCANNNNNNTGG	1 cut(s)	439
BsuRI	GGCC	4 cut(s)	62, 113, 290, 314
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	448, 493
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	122, 363, 501
CaiI	CAGNNNCTG	2 cut(s)	307, 535
CfoI	GCGC	1 cut(s)	373
Cfr10I	RCCGGY	2 cut(s)	219, 471
Cfr13I	GGNCC	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	6 cut(s)	22, 167, 223, 265, 448, 532
CviAII	CATG	2 cut(s)	71, 109
CviQI	GTAC	6 cut(s)	22, 167, 223, 265, 448, 532
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	2 cut(s)	300, 507
DpnII	GATC	2 cut(s)	298, 505
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	203, 414
EarI	CTCTTC	2 cut(s)	203, 414
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	2 cut(s)	313, 407
EcoICRI	GAGCTC	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	2 cut(s)	74, 112
FaiI	YATR	8 cut(s)	72, 110, 215, 217, 227, 229, 240, 272
FatI	CATG	2 cut(s)	70, 108
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	2 cut(s)	215, 227
FokI	GGATG	2 cut(s)	455, 500
FriOI	GRGCYC	1 cut(s)	344
GlaI	GCGC	1 cut(s)	372
GsaI	CCCAGC	1 cut(s)	464
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	4 cut(s)	62, 113, 290, 314
HapII	CCGG	4 cut(s)	11, 220, 472, 613
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	74, 112
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	7, 148, 203, 274, 617
HpaII	CCGG	4 cut(s)	11, 220, 472, 613
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	4 cut(s)	22, 85, 106, 448
Hpy188I	TCNGA	3 cut(s)	161, 339, 601
Hpy188III	TCNNGA	4 cut(s)	51, 145, 207, 573
Hpy8I	GTNNAC	4 cut(s)	22, 85, 106, 448
HpyAV	CCTTC	3 cut(s)	311, 582, 622
HpyCH4III	ACNGT	2 cut(s)	33, 269
HpyCH4V	TGCA	1 cut(s)	643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 339, 526
HpyF3I	CTNAG	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	74, 112
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	2 cut(s)	298, 505
LmnI	GCTCC	1 cut(s)	401
LweI	GCATC	1 cut(s)	630
MabI	ACCWGGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	300, 507
MboI	GATC	2 cut(s)	298, 505
MboII	GAAGA	4 cut(s)	190, 191, 197, 431
MhlI	GDGCHC	2 cut(s)	126, 344
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	491
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	7 cut(s)	152, 206, 301, 304, 345, 391, 450
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	2 cut(s)	15, 655
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	4 cut(s)	11, 220, 472, 613
MspR9I	CCNGG	2 cut(s)	536, 614
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	130, 339, 526
NciI	CCSGG	1 cut(s)	614
NdeI	CATATG	2 cut(s)	215, 227
NdeII	GATC	2 cut(s)	298, 505
NlaIII	CATG	2 cut(s)	74, 112
NmeAIII	GCCGAG	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	290
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	4 cut(s)	148, 203, 274, 617
Psp124BI	GAGCTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	26
PstNI	CAGNNNCTG	2 cut(s)	307, 535
RsaI	GTAC	6 cut(s)	23, 168, 224, 266, 449, 533
RsaNI	GTAC	6 cut(s)	22, 167, 223, 265, 448, 532
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	15, 655
Sau3AI	GATC	2 cut(s)	298, 505
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	536, 614
SduI	GDGCHC	2 cut(s)	126, 344
SexAI	ACCWGGT	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	630
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	491
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	2 cut(s)	44, 482
SstI	GAGCTC	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	534, 612
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	33, 269
TaqI	TCGA	3 cut(s)	201, 572, 608
TasI	AATT	1 cut(s)	491
TfiI	GAWTC	4 cut(s)	148, 203, 274, 617
Tru1I	TTAA	2 cut(s)	15, 655
Tru9I	TTAA	2 cut(s)	15, 655
TscAI	CASTG	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	287, 395, 432, 504
TspGWI	ACGGA	3 cut(s)	39, 91, 563
TspRI	CASTG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.