Rh6AG439100

U11 U12 small nuclear ribonucleoprotein 25 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003844
Physical Location & Seq
Forward (+)
62741451 .. 62742552
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG439100.1

Sequence Viewer

Length: 561 bp
ATGGAGTCCACAACGACGCCGGAAGCTAGCGTTAGCTTGGAAGGATACAAGGAAAGCAACATAAAGAAAGCAAGGTTACAGTCGACGCTGGCCGCCCTCTTGGACGATCCCATCCTTTCCGACGTCCCCCAAAAACCGACCTTATCTGATGTCGACACTCTCCTCAGCCTCGAATTCGGCAGCGCCATGCGCATCAGTGTCGTCAAGCTTGACGCCACCTCTTTCGATGTAGCGCTCATGAACTCTGCTACGGTCAAGGATCTCAAGCTTGCGATAAAAAAGAAAGTCAACGAAATGGAGCAGTCCAAGATGGGTCACCGCCACATTTCATGGAAGCATGTGTGGGGGAATTTTTGCCTGTCATACCACAATGAGAAGTTGCTGGATGACAATGCCGCAGTTGAGGAGTACGGCATTCGCAACAATTCTCAGGCCATTGCTGCTATTATAACAAATCTTGTGAGCTATATCAATGGTAATCCTTCCATTGCCTACGTCCTCAATGCAATTCCTATGAATATCCTGCAAATCGTTGCAGTCCCTATTCCTCCCCTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.41

Weight (kDa)

5.79

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 63 - 144 2.5e-29 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 449
AatII GACGTC 1 cut(s) 126
Acc16I TGCGCA 1 cut(s) 191
AccI GTMKAC 2 cut(s) 83, 153
AciI CCGC 3 cut(s) 93, 319, 396
AclWI GGATC 2 cut(s) 101, 267
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 2 cut(s) 173, 349
AcyI GRCGYC 3 cut(s) 17, 123, 213
AfaI GTAC 1 cut(s) 410
AfeI AGCGCT 1 cut(s) 234
AluBI AGCT 5 cut(s) 26, 36, 208, 268, 465
AluI AGCT 5 cut(s) 26, 36, 208, 268, 465
AlwI GGATC 2 cut(s) 101, 267
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 2 cut(s) 90, 432
ApeKI GCWGC 2 cut(s) 180, 440
ApoI RAATTY 2 cut(s) 173, 349
AspLEI GCGC 3 cut(s) 185, 192, 235
AsuHPI GGTGA 1 cut(s) 308
AsuNHI GCTAGC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 192, 427
BccI CCATC 2 cut(s) 119, 304
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciVI GTATCC 1 cut(s) 38
BfaI CTAG 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 186, 236
BfuI GTATCC 1 cut(s) 38
BisI GCNGC 4 cut(s) 93, 181, 396, 441
BlsI GCNGC 4 cut(s) 94, 182, 397, 442
BmsI GCATC 1 cut(s) 201
BmtI GCTAGC 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 3 cut(s) 17, 123, 213
Bse3DI GCAATG 2 cut(s) 435, 486
BseGI GGATG 2 cut(s) 111, 391
BseMI GCAATG 2 cut(s) 435, 486
BseMII CTCAG 2 cut(s) 178, 443
BseRI GAGGAG 2 cut(s) 152, 419
BseXI GCAGC 2 cut(s) 192, 427
BshFI GGCC 2 cut(s) 92, 434
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 2 cut(s) 110, 524
BsmFI GGGAC 2 cut(s) 110, 524
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 2 cut(s) 92, 434
Bsp143I GATC 2 cut(s) 106, 259
BspACI CCGC 3 cut(s) 93, 319, 396
BspANI GGCC 2 cut(s) 92, 434
BspCNI CTCAG 2 cut(s) 177, 442
BspHI TCATGA 1 cut(s) 237
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 101, 267
BsrDI GCAATG 2 cut(s) 435, 486
BssMI GATC 2 cut(s) 106, 259
BssNI GRCGYC 3 cut(s) 17, 123, 213
Bst4CI ACNGT 2 cut(s) 81, 253
BstACI GRCGYC 3 cut(s) 17, 123, 213
BstC8I GCNNGC 3 cut(s) 28, 90, 270
BstDEI CTNAG 2 cut(s) 164, 429
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 2 cut(s) 111, 391
BstH2I RGCGCY 2 cut(s) 186, 236
BstHHI GCGC 3 cut(s) 185, 192, 235
BstKTI GATC 2 cut(s) 109, 262
BstMBI GATC 2 cut(s) 106, 259
BstMWI GCNNNNNNNGC 2 cut(s) 189, 440
BstNSI RCATGY 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 192, 427
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuI GTATCC 1 cut(s) 38
BsuRI GGCC 2 cut(s) 92, 434
BtsCI GGATG 2 cut(s) 111, 391
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 3 cut(s) 28, 90, 270
CciI TCATGA 1 cut(s) 237
CfoI GCGC 3 cut(s) 185, 192, 235
CseI GACGC 3 cut(s) 25, 94, 221
Csp6I GTAC 1 cut(s) 409
CviAII CATG 5 cut(s) 187, 238, 330, 338, 558
CviJI RGCY 8 cut(s) 26, 36, 92, 168, 208, 268, 434, 465
CviKI_1 RGCY 8 cut(s) 26, 36, 92, 168, 208, 268, 434, 465
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 164, 429
DpnI GATC 2 cut(s) 108, 261
DpnII GATC 2 cut(s) 106, 259
EaeI YGGCCR 1 cut(s) 90
Eco47III AGCGCT 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 5 cut(s) 190, 241, 333, 341, 561
FaqI GGGAC 2 cut(s) 110, 524
FatI CATG 5 cut(s) 186, 237, 329, 337, 557
FblI GTMKAC 2 cut(s) 83, 153
Fnu4HI GCNGC 4 cut(s) 93, 181, 396, 441
FokI GGATG 2 cut(s) 98, 398
Fsp4HI GCNGC 4 cut(s) 93, 181, 396, 441
FspAI RTGCGCAY 1 cut(s) 191
FspBI CTAG 1 cut(s) 27
FspI TGCGCA 1 cut(s) 191
GlaI GCGC 3 cut(s) 184, 191, 234
GluI GCNGC 4 cut(s) 93, 181, 396, 441
HaeII RGCGCY 2 cut(s) 186, 236
HaeIII GGCC 2 cut(s) 92, 434
HapII CCGG 1 cut(s) 20
HgaI GACGC 3 cut(s) 25, 94, 221
HhaI GCGC 3 cut(s) 185, 192, 235
Hin1I GRCGYC 3 cut(s) 17, 123, 213
Hin1II CATG 5 cut(s) 190, 241, 333, 341, 561
Hin6I GCGC 3 cut(s) 183, 190, 233
HinP1I GCGC 3 cut(s) 183, 190, 233
HincII GTYRAC 3 cut(s) 84, 154, 289
HindII GTYRAC 3 cut(s) 84, 154, 289
HindIII AAGCTT 2 cut(s) 206, 266
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 4 cut(s) 9, 84, 154, 289
Hpy188I TCNGA 2 cut(s) 121, 148
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 4 cut(s) 9, 84, 154, 289
Hpy99I CGWCG 3 cut(s) 19, 88, 125
HpyAV CCTTC 2 cut(s) 35, 492
HpyCH4III ACNGT 2 cut(s) 81, 253
HpyCH4IV ACGT 2 cut(s) 123, 495
HpyCH4V TGCA 3 cut(s) 506, 526, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 440
HpyF3I CTNAG 2 cut(s) 164, 429
HpySE526I ACGT 2 cut(s) 123, 495
Hsp92I GRCGYC 3 cut(s) 17, 123, 213
Hsp92II CATG 5 cut(s) 190, 241, 333, 341, 561
HspAI GCGC 3 cut(s) 183, 190, 233
Kzo9I GATC 2 cut(s) 106, 259
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 6 cut(s) 33, 74, 368, 371, 416, 536
Lsp1109I GCAGC 2 cut(s) 192, 427
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 27
MaeII ACGT 2 cut(s) 123, 495
MaeIII GTNAC 2 cut(s) 75, 314
MalI GATC 2 cut(s) 108, 261
MboI GATC 2 cut(s) 106, 259
MflI RGATCY 1 cut(s) 259
MluCI AATT 4 cut(s) 173, 349, 424, 507
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 7 cut(s) 107, 173, 179, 229, 397, 509, 558
MspI CCGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 189, 440
NdeII GATC 2 cut(s) 106, 259
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 5 cut(s) 190, 241, 333, 341, 561
NmuCI GTSAC 1 cut(s) 314
NsbI TGCGCA 1 cut(s) 191
NspI RCATGY 1 cut(s) 341
PagI TCATGA 1 cut(s) 237
PctI GAATGC 1 cut(s) 414
PkrI GCNGC 4 cut(s) 94, 182, 397, 442
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 449
PspEI GGTNACC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SalI GTCGAC 2 cut(s) 82, 152
SatI GCNGC 4 cut(s) 93, 181, 396, 441
Sau3AI GATC 2 cut(s) 106, 259
SchI GAGTC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 4 cut(s) 173, 349, 424, 507
SsiI CCGC 3 cut(s) 93, 319, 396
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 81, 253
TaiI ACGT 2 cut(s) 126, 498
TaqI TCGA 4 cut(s) 83, 153, 171, 225
TasI AATT 4 cut(s) 173, 349, 424, 507
TauI GCSGC 2 cut(s) 95, 398
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 180, 440
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 254, 318, 530
TspRI CASTG 1 cut(s) 202
XapI RAATTY 2 cut(s) 173, 349
XceI RCATGY 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 83, 153
XspI CTAG 1 cut(s) 27
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.