Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003844

Physical Location & Seq

Genomic Coordinates Reverse (-)

452051 .. 453111

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAGTCGGATGCGAAGGGGAAGGGGGAGATAAGCGTGGAAGGATACAAGGAAAGCAACATAAAGAAAGCCAGGTTGCAGTCGACGCTTGCTGCCCTTGTCAATGATCCTATTCTTTCCGACGTTCCTAAAAAACCAACCTTGTCCGATGTCGACACTCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCCTCAAGCTCGACGGCACTTCCTTCGATGTGGCAGTGATGAATTCTGCTACGGTGAAGGACCTTAAGCTTGCAATCAGGAAGAAAATCAACGAGATGGAGCAATCTAAGATGGGTCACCGCCACATTTCATGGAATCACGTCTGGAGGAATTTTTGCCTCTCATACCACAATGAGAAGCTGCTTGATGATAATGCTCCAGTTCAGCATTTTGGCATACACAATCATTCTCAGGTGCATTTTGTTCCTTATATTGCGCTCAAGGATTCTCGTAAGCATTCGAAGAGGAGGAGATACCGCTTCTTTCACGGCCTCAGCAAGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

9.68

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07860 AT3G07860 AT3G07860
malus_domestica	MD08G1006500.v1.1 MD08G1006600.v1.1
prunus_persica	Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358500_v2.0.a1
pyrus_communis	pycom08g00500 pycom08g00510 pycom15g00430
rosa_chinensis	RchiOBHm_Chr6g0303771 RchiOBHm_Chr6g0303781
rosa_laevigata	RLG00000011044 RLG00000011045
rosa_multiflora	Rmu_co8472743.1_g000001 Rmu_sc0012878.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164410 Rroxscaffold_7G00164420
rosa_rugosa	Rorug06G0324700 Rorug06G0324700
rosa_samantha	Rh6AG439000 Rh6AG439100 Rh6BG463900 Rh6BG464000 Rh6CG451300 Rh6CG451400 Rh6DG438200 Rh6DG438300
rosa_wichuraiana	Rw6G038010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
AccI	GTMKAC	2 cut(s)	83, 153
AciI	CCGC	2 cut(s)	319, 496
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	241, 349
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflII	CTTAAG	1 cut(s)	263
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	4 cut(s)	208, 268, 379, 520
AluI	AGCT	4 cut(s)	208, 268, 379, 520
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	3 cut(s)	92, 180, 379
ApoI	RAATTY	2 cut(s)	241, 349
AspLEI	GCGC	3 cut(s)	185, 192, 457
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	265, 308
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	79, 192, 366
BccI	CCATC	2 cut(s)	289, 304
BceAI	ACGGC	2 cut(s)	229, 523
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	3 cut(s)	93, 181, 380
BlsI	GCNGC	3 cut(s)	94, 182, 381
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	2 cut(s)	364, 381
Bpu10I	CCTNAGC	1 cut(s)	512
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	188, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	443, 526
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	499, 502
BseXI	GCAGC	3 cut(s)	79, 192, 366
BshFI	GGCC	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	510
Bsp119I	TTCGAA	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	319, 496
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	442, 525
BspPI	GGATC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	90, 270, 518
BstDEI	CTNAG	3 cut(s)	306, 429, 512
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	3 cut(s)	185, 192, 457
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 189
BstNI	CCWGG	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	79, 192, 366
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	510
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	90, 270, 518
CfoI	GCGC	3 cut(s)	185, 192, 457
Cfr13I	GGNCC	1 cut(s)	259
CseI	GACGC	1 cut(s)	94
CviAII	CATG	2 cut(s)	187, 330
CviJI	RGCY	7 cut(s)	71, 168, 208, 268, 379, 510, 520
CviKI_1	RGCY	7 cut(s)	71, 168, 208, 268, 379, 510, 520
DdeI	CTNAG	3 cut(s)	306, 429, 512
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	190, 333
FaiI	YATR	6 cut(s)	62, 188, 331, 364, 416, 450
FatI	CATG	2 cut(s)	186, 329
FblI	GTMKAC	2 cut(s)	83, 153
Fnu4HI	GCNGC	3 cut(s)	93, 181, 380
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	93, 181, 380
FspAI	RTGCGCAY	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	3 cut(s)	184, 191, 456
GluI	GCNGC	3 cut(s)	93, 181, 380
GsuI	CTGGAG	2 cut(s)	364, 381
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	510
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	3 cut(s)	185, 192, 457
Hin1II	CATG	2 cut(s)	190, 333
Hin6I	GCGC	3 cut(s)	183, 190, 455
HinP1I	GCGC	3 cut(s)	183, 190, 455
HincII	GTYRAC	2 cut(s)	84, 154
HindII	GTYRAC	2 cut(s)	84, 154
HindIII	AAGCTT	2 cut(s)	266, 518
HinfI	GANTC	3 cut(s)	5, 334, 464
HphI	GGTGA	2 cut(s)	265, 308
Hpy166II	GTNNAC	2 cut(s)	84, 154
Hpy188I	TCNGA	3 cut(s)	10, 121, 148
Hpy188III	TCNNGA	3 cut(s)	277, 343, 525
Hpy8I	GTNNAC	2 cut(s)	84, 154
Hpy99I	CGWCG	3 cut(s)	88, 125, 215
HpyAV	CCTTC	5 cut(s)	10, 16, 35, 232, 250
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	2 cut(s)	123, 339
HpyCH4V	TGCA	3 cut(s)	79, 272, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 189
HpyF3I	CTNAG	3 cut(s)	306, 429, 512
HpySE526I	ACGT	2 cut(s)	123, 339
Hsp92II	CATG	2 cut(s)	190, 333
HspAI	GCGC	3 cut(s)	183, 190, 455
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	298, 400
LpnPI	CCDG	6 cut(s)	58, 85, 262, 328, 411, 416
Lsp1109I	GCAGC	3 cut(s)	79, 192, 366
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	2 cut(s)	123, 339
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	292, 493
MluCI	AATT	3 cut(s)	173, 241, 349
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	7 cut(s)	179, 212, 339, 368, 477, 480, 521
MseI	TTAA	1 cut(s)	264
MspCI	CTTAAG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	2 cut(s)	85, 189
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	190, 333
NmuCI	GTSAC	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	479
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	334, 464
PkrI	GCNGC	3 cut(s)	94, 182, 381
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
SalI	GTCGAC	2 cut(s)	82, 152
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	93, 181, 380
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	203, 263, 458
SmoI	CTYRAG	3 cut(s)	203, 263, 458
Sse9I	AATT	3 cut(s)	173, 241, 349
SsiI	CCGC	2 cut(s)	319, 496
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	2 cut(s)	126, 342
TaqI	TCGA	6 cut(s)	83, 153, 171, 210, 225, 479
TasI	AATT	3 cut(s)	173, 241, 349
TfiI	GAWTC	2 cut(s)	334, 464
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	92, 180, 379
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	254, 318
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	240
Vha464I	CTTAAG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	241, 349
XmiI	GTMKAC	2 cut(s)	83, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.