Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003844

Physical Location & Seq

Genomic Coordinates Forward (+)

47614506 .. 47615459

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTATGTGGGAAGGATAGAGCTACTGGTGAAGGAGCAGAAGACGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGTAGAAGATGAAAGTGATATGACTCCCAATTCACATGCCTCAACACATGCAGCAACTTCAACTTGTGATCCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTACCAAACCTCAGCAAATTACAAGTTTTCAAAGTTGTACGCATATTGATGAGTGGTAACCCCGAAGAATTCTCTCTATTGAAGTCTCTTAATGATGCTGAAAAGAATGAGTGGATAAGAATGCTCATATGGCAATCTGAAGGGTCTGGAATTCTCTTCCTCAATGCTTTTTTGGGCCAATCAAGGAATAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.73

Weight (kDa)

4.97

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07860 AT3G07860 AT3G07860
malus_domestica	MD08G1006500.v1.1 MD08G1006600.v1.1
prunus_persica	Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358500_v2.0.a1
pyrus_communis	pycom08g00500 pycom08g00510 pycom15g00430
rosa_chinensis	RchiOBHm_Chr6g0303771 RchiOBHm_Chr6g0303781
rosa_laevigata	RLG00000011044 RLG00000011045
rosa_multiflora	Rmu_co8472743.1_g000001 Rmu_sc0012878.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164410 Rroxscaffold_7G00164420
rosa_rugosa	Rorug06G0324700 Rorug06G0324700
rosa_samantha	Rh6AG439000 Rh6AG439100 Rh6BG463900 Rh6BG464000 Rh6CG451300 Rh6CG451400 Rh6DG438200 Rh6DG438300
rosa_wichuraiana	Rw6G038010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	140, 173, 186
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	4 cut(s)	71, 224, 356, 438
AcuI	CTGAAG	2 cut(s)	78, 447
AfaI	GTAC	3 cut(s)	270, 291, 327
AgsI	TTSAA	5 cut(s)	77, 138, 220, 319, 370
AluBI	AGCT	2 cut(s)	23, 236
AluI	AGCT	2 cut(s)	23, 236
Alw26I	GTCTC	2 cut(s)	247, 378
AlwI	GGATC	3 cut(s)	140, 173, 186
AoxI	GGCC	2 cut(s)	207, 463
ApeKI	GCWGC	2 cut(s)	128, 233
ApoI	RAATTY	4 cut(s)	71, 224, 356, 438
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	140, 245
BcoDI	GTCTC	2 cut(s)	247, 378
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	129, 234
BlsI	GCNGC	2 cut(s)	130, 235
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	2 cut(s)	43, 373
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bse1I	ACTGG	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	150
BseGI	GGATG	2 cut(s)	151, 271
BseJI	GATNNNNATC	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	140, 245
BshFI	GGCC	2 cut(s)	209, 465
BsmAI	GTCTC	2 cut(s)	247, 378
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	209, 465
Bsp1407I	TGTACA	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	145, 178
BspANI	GGCC	2 cut(s)	209, 465
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	140, 173, 186
BsrGI	TGTACA	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	145, 178
Bst6I	CTCTTC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	299
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	151, 271
BstKTI	GATC	2 cut(s)	148, 181
BstMAI	GTCTC	2 cut(s)	247, 378
BstMBI	GATC	2 cut(s)	145, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNSI	RCATGY	2 cut(s)	116, 128
BstPI	GGTNACC	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	140, 245
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	209, 465
BtsCI	GGATG	2 cut(s)	151, 271
Cfr13I	GGNCC	1 cut(s)	463
Csp6I	GTAC	3 cut(s)	269, 290, 326
CviAII	CATG	3 cut(s)	113, 125, 272
CviJI	RGCY	4 cut(s)	23, 209, 236, 465
CviKI_1	RGCY	4 cut(s)	23, 209, 236, 465
CviQI	GTAC	3 cut(s)	269, 290, 326
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	147, 180
DpnII	GATC	2 cut(s)	145, 178
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	78, 447
Eco91I	GGTNACC	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	344
EcoRI	GAATTC	2 cut(s)	356, 438
FaeI	CATG	3 cut(s)	116, 128, 275
FatI	CATG	3 cut(s)	112, 124, 271
FauNDI	CATATG	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	129, 234
FokI	GGATG	2 cut(s)	138, 278
Fsp4HI	GCNGC	2 cut(s)	129, 234
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	129, 234
HaeIII	GGCC	2 cut(s)	209, 465
Hin1II	CATG	3 cut(s)	116, 128, 275
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	1 cut(s)	435
HpyAV	CCTTC	4 cut(s)	7, 26, 214, 422
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	116, 128, 275
Kzo9I	GATC	2 cut(s)	145, 178
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	2 cut(s)	12, 420
Lsp1109I	GCAGC	2 cut(s)	140, 245
LweI	GCATC	2 cut(s)	43, 373
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	2 cut(s)	147, 180
MboI	GATC	2 cut(s)	145, 178
MboII	GAAGA	5 cut(s)	53, 71, 95, 365, 436
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	7 cut(s)	71, 106, 195, 224, 305, 356, 438
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	5 cut(s)	127, 165, 256, 308, 458
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	209
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	418
NdeI	CATATG	1 cut(s)	416
NdeII	GATC	2 cut(s)	145, 178
NlaIII	CATG	3 cut(s)	116, 128, 275
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	2 cut(s)	116, 128
PctI	GAATGC	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	130, 235
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	270, 291, 327
RsaNI	GTAC	3 cut(s)	269, 290, 326
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	129, 234
Sau3AI	GATC	2 cut(s)	145, 178
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	1 cut(s)	94
SetI	ASST	5 cut(s)	25, 48, 218, 238, 300
SfaNI	GCATC	2 cut(s)	43, 373
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	7 cut(s)	71, 106, 195, 224, 305, 356, 438
SspMI	CTAG	1 cut(s)	185
TaiI	ACGT	1 cut(s)	48
TasI	AATT	7 cut(s)	71, 106, 195, 224, 305, 356, 438
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	2 cut(s)	128, 233
TspDTI	ATGAA	2 cut(s)	102, 288
XapI	RAATTY	4 cut(s)	71, 224, 356, 438
XceI	RCATGY	2 cut(s)	116, 128
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.