Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012878.1

Orthogroup ID

OG0003844

Physical Location & Seq

Genomic Coordinates Reverse (-)

11267 .. 12199

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012878.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgaccgagactgaacagaagagcaacatcaacatggagtccaaaacgacgccggaagctagcgttagcttggaaggatacaaggaaagcaacataaagaaagcaaggttacagtcgacgctagccgccctcttggacgatcccatcctttccgacgtccccaaaaaaccgaccttatcggatgtcgacactctcctcagcctcgaattcggcagcgccatgcgcatcagtgtcgtcaagcttgacgccacctctttcgatgtggcgctcatgaactctgctacggtcaaggatctcaagcttgcgataaaaaagaaagtcaacgaaatgaagcagtccaagatgggtcaccgccacatttcatggaagcatgtgtgggggaatttttgcctgtcataccacaatgagaagttgctggatgacaatgccgcagttgaggagtacggcattcgcaacaattctcaggtgcattttgttccttgtgtggcgtccaagggttctcggaggcattcaaagaggaggagacatcgcttctttcatggtcttagcaagcgaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.09

Weight (kDa)

9.67

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07860 AT3G07860 AT3G07860
malus_domestica	MD08G1006500.v1.1 MD08G1006600.v1.1
prunus_persica	Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358400_v2.0.a1 Prupe.1G358500_v2.0.a1
pyrus_communis	pycom08g00500 pycom08g00510 pycom15g00430
rosa_chinensis	RchiOBHm_Chr6g0303771 RchiOBHm_Chr6g0303781
rosa_laevigata	RLG00000011044 RLG00000011045
rosa_multiflora	Rmu_co8472743.1_g000001 Rmu_sc0012878.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164410 Rroxscaffold_7G00164420
rosa_rugosa	Rorug06G0324700 Rorug06G0324700
rosa_samantha	Rh6AG439000 Rh6AG439100 Rh6BG463900 Rh6BG464000 Rh6CG451300 Rh6CG451400 Rh6DG438200 Rh6DG438300
rosa_wichuraiana	Rw6G038010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
Acc16I	TGCGCA	1 cut(s)	224
AccI	GTMKAC	2 cut(s)	116, 186
AciI	CCGC	3 cut(s)	126, 352, 429
AclWI	GGATC	2 cut(s)	134, 300
AcsI	RAATTY	2 cut(s)	206, 382
AcyI	GRCGYC	4 cut(s)	50, 156, 246, 488
AfaI	GTAC	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	513
AluBI	AGCT	4 cut(s)	59, 69, 241, 301
AluI	AGCT	4 cut(s)	59, 69, 241, 301
Alw26I	GTCTC	2 cut(s)	2, 517
AlwI	GGATC	2 cut(s)	134, 300
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	2 cut(s)	206, 382
AspLEI	GCGC	3 cut(s)	218, 225, 268
AsuHPI	GGTGA	1 cut(s)	341
AsuNHI	GCTAGC	2 cut(s)	59, 121
BbvCI	CCTCAGC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	152, 337
BceAI	ACGGC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	2, 517
BfaI	CTAG	2 cut(s)	60, 122
BfoI	RGCGCY	2 cut(s)	219, 269
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	3 cut(s)	126, 214, 429
BlsI	GCNGC	3 cut(s)	127, 215, 430
BmsI	GCATC	1 cut(s)	234
BmtI	GCTAGC	2 cut(s)	63, 125
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	281
BsaHI	GRCGYC	4 cut(s)	50, 156, 246, 488
BsaJI	CCNNGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	144, 187, 424
BseMII	CTCAG	2 cut(s)	211, 476
BseRI	GAGGAG	4 cut(s)	185, 452, 532, 535
BseXI	GCAGC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	2, 517
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	2 cut(s)	447, 508
Bsp143I	GATC	2 cut(s)	139, 292
BspACI	CCGC	3 cut(s)	126, 352, 429
BspCNI	CTCAG	2 cut(s)	210, 475
BspHI	TCATGA	1 cut(s)	270
BspOI	GCTAGC	2 cut(s)	63, 125
BspPI	GGATC	2 cut(s)	134, 300
BspQI	GCTCTTC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	139, 292
BssNI	GRCGYC	4 cut(s)	50, 156, 246, 488
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	114, 286
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	4 cut(s)	50, 156, 246, 488
BstC8I	GCNNGC	4 cut(s)	61, 123, 303, 551
BstDEI	CTNAG	3 cut(s)	197, 462, 545
BstEII	GGTNACC	1 cut(s)	347
BstF5I	GGATG	3 cut(s)	144, 187, 424
BstH2I	RGCGCY	2 cut(s)	219, 269
BstHHI	GCGC	3 cut(s)	218, 225, 268
BstKTI	GATC	2 cut(s)	142, 295
BstMAI	GTCTC	2 cut(s)	2, 517
BstMBI	GATC	2 cut(s)	139, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	374
BstPI	GGTNACC	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	144, 187, 424
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	4 cut(s)	61, 123, 303, 551
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	3 cut(s)	218, 225, 268
CseI	GACGC	4 cut(s)	58, 127, 254, 477
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	6 cut(s)	34, 220, 271, 363, 371, 539
CviJI	RGCY	6 cut(s)	59, 69, 125, 201, 241, 301
CviKI_1	RGCY	6 cut(s)	59, 69, 125, 201, 241, 301
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	197, 462, 545
DpnI	GATC	2 cut(s)	141, 294
DpnII	GATC	2 cut(s)	139, 292
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	6 cut(s)	37, 223, 274, 366, 374, 542
FaiI	YATR	8 cut(s)	35, 95, 221, 272, 364, 372, 397, 540
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	6 cut(s)	33, 219, 270, 362, 370, 538
FblI	GTMKAC	2 cut(s)	116, 186
Fnu4HI	GCNGC	3 cut(s)	126, 214, 429
FokI	GGATG	3 cut(s)	131, 194, 431
Fsp4HI	GCNGC	3 cut(s)	126, 214, 429
FspAI	RTGCGCAY	1 cut(s)	224
FspBI	CTAG	2 cut(s)	60, 122
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	3 cut(s)	217, 224, 267
GluI	GCNGC	3 cut(s)	126, 214, 429
HaeII	RGCGCY	2 cut(s)	219, 269
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	4 cut(s)	58, 127, 254, 477
HhaI	GCGC	3 cut(s)	218, 225, 268
Hin1I	GRCGYC	4 cut(s)	50, 156, 246, 488
Hin1II	CATG	6 cut(s)	37, 223, 274, 366, 374, 542
Hin6I	GCGC	3 cut(s)	216, 223, 266
HinP1I	GCGC	3 cut(s)	216, 223, 266
HincII	GTYRAC	3 cut(s)	117, 187, 322
HindII	GTYRAC	3 cut(s)	117, 187, 322
HindIII	AAGCTT	2 cut(s)	239, 299
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	117, 187, 322
Hpy188I	TCNGA	3 cut(s)	154, 181, 504
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	3 cut(s)	117, 187, 322
Hpy99I	CGWCG	3 cut(s)	52, 121, 158
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	114, 286
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	3 cut(s)	197, 462, 545
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	4 cut(s)	50, 156, 246, 488
Hsp92II	CATG	6 cut(s)	37, 223, 274, 366, 374, 542
HspAI	GCGC	3 cut(s)	216, 223, 266
Kzo9I	GATC	2 cut(s)	139, 292
LguI	GCTCTTC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	66, 401, 404, 449
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	60, 122
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	108, 347
MalI	GATC	2 cut(s)	141, 294
MboI	GATC	2 cut(s)	139, 292
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	3 cut(s)	206, 382, 457
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	140, 206, 212, 262, 430, 498, 510, 513
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	53
Mva1269I	GAATGC	2 cut(s)	447, 508
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	2 cut(s)	139, 292
NheI	GCTAGC	2 cut(s)	59, 121
NlaIII	CATG	6 cut(s)	37, 223, 274, 366, 374, 542
NmuCI	GTSAC	1 cut(s)	347
NsbI	TGCGCA	1 cut(s)	224
NspI	RCATGY	1 cut(s)	374
PagI	TCATGA	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	14
PctI	GAATGC	2 cut(s)	447, 508
PkrI	GCNGC	3 cut(s)	127, 215, 430
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	32
SalI	GTCGAC	2 cut(s)	115, 185
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	3 cut(s)	126, 214, 429
Sau3AI	GATC	2 cut(s)	139, 292
SchI	GAGTC	1 cut(s)	47
SetI	ASST	9 cut(s)	61, 71, 110, 159, 176, 243, 254, 303, 468
SfaNI	GCATC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	206, 382, 457
SsiI	CCGC	3 cut(s)	126, 352, 429
SspMI	CTAG	2 cut(s)	60, 122
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	114, 286
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	4 cut(s)	116, 186, 204, 258
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	206, 382, 457
TauI	GCSGC	2 cut(s)	128, 431
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	287, 344, 351, 527
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	2 cut(s)	206, 382
XceI	RCATGY	1 cut(s)	374
XmiI	GTMKAC	2 cut(s)	116, 186
XspI	CTAG	2 cut(s)	60, 122
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.