Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Forward (+)

3318975 .. 3320187

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGTCGTGTTCGTACCAAAACGGTTAAGAAGTCTTCACGTCAGGTGATTGAGAAGTACTACTCACGGATGACACTAGACTTCCACACCAACAAGAAGATCTTGGAAGAAGTTGCAATCATCCCATCGAAAAGGCTACGCAACAAGATTGCTGGATTCTCCACTCACTTGATGAAACGTATCCAAAAGGGTCCAGTCCGTGGAATCTCCCTCAAGCTACAAGAGGAAGAGCGTGAAAGGCGAATGGACTTTGTTCCCGATGAGTCAGCCATTAAAATCGATGATGTTAAGGTGGACAAAGAGACACTAGAGATGCTTGCTTCTTTGGGAATGTCTGATATTGCTGGGATTTCTCAAGTGGAGACACAACAAGCTATGGCACCTGCTGTGTTTGGACGTCCCGCAGGAAGATACCAACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

140

Amino Acids

16.04

Weight (kDa)

10.04

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 120	9.9e-59	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AatII	GACGTC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	379
AccB7I	CCANNNNNTGG	1 cut(s)	200
AciI	CCGC	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	397
AfaI	GTAC	2 cut(s)	16, 59
AfiI	CCNNNNNNNGG	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	41
AluBI	AGCT	2 cut(s)	217, 374
AluI	AGCT	2 cut(s)	217, 374
Alw26I	GTCTC	2 cut(s)	296, 356
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	27
BccI	CCATC	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	296, 356
BfaI	CTAG	2 cut(s)	77, 308
BfuAI	ACCTGC	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	99
BmcAI	AGTACT	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	192, 381
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	197, 339
Bsa29I	ATCGAT	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	75, 120
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	296, 356
BsmFI	GGGAC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	402
BspDI	ATCGAT	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	192, 381
BspMI	ACCTGC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	99
BssNI	GRCGYC	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	75, 120
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	296, 356
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	75, 120
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	191
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	15, 58
CviJI	RGCY	4 cut(s)	136, 217, 269, 374
CviKI_1	RGCY	4 cut(s)	136, 217, 269, 374
CviQI	GTAC	2 cut(s)	15, 58
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	191
FaiI	YATR	1 cut(s)	377
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	384
FauI	CCCGC	1 cut(s)	409
FokI	GGATG	2 cut(s)	82, 107
FspBI	CTAG	2 cut(s)	77, 308
GsaI	CCCAGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	156, 204, 263
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	3 cut(s)	40, 178, 397
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpySE526I	ACGT	3 cut(s)	40, 178, 397
Hsp92I	GRCGYC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	99
LguI	GCTCTTC	1 cut(s)	222
LpnPI	CCDG	6 cut(s)	29, 138, 207, 330, 390, 396
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	77, 308
MaeII	ACGT	3 cut(s)	40, 178, 397
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	5 cut(s)	27, 109, 119, 239, 420
MflI	RGATCY	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	2 cut(s)	217, 221
MseI	TTAA	3 cut(s)	27, 273, 288
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	1 cut(s)	99
NlaIV	GGNNCC	2 cut(s)	192, 381
PaqCI	CACCTGC	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	156, 204
PflMI	CCANNNNNTGG	1 cut(s)	200
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	192, 381
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	2 cut(s)	16, 59
RsaNI	GTAC	2 cut(s)	15, 58
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	27, 273, 288
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	191
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	1 cut(s)	272
SetI	ASST	8 cut(s)	43, 48, 181, 219, 294, 376, 385, 400
SfaNI	GCATC	1 cut(s)	303
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	212, 354
SmoI	CTYRAG	2 cut(s)	212, 354
SsiI	CCGC	1 cut(s)	402
SspMI	CTAG	2 cut(s)	77, 308
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	3 cut(s)	43, 181, 400
TaqI	TCGA	2 cut(s)	128, 279
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	156, 204
Tru1I	TTAA	3 cut(s)	27, 273, 288
Tru9I	TTAA	3 cut(s)	27, 273, 288
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	82, 188
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	191
XspI	CTAG	2 cut(s)	77, 308
ZraI	GACGTC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.