Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Reverse (-)

16263837 .. 16264259

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGCCGCGTTCGCACAAAGACGGTGAAGAAGTCATCTCGCCAGGTTATCGAGCGATACTACTCGCGCATGACCCTGGACTTCCACACCAACAAGAAGATCCTGCAAGAAGTCGCCATCATCCCCTCGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCTACCCACCTCATGAAGCGGATCCAGAAGGGCCCGGTTCGCGGTATCTCCCTAAAGCTGCAGGAGGAGGAGCGCGAACGCCGCATGGACTTCGTCCCCGAAGAGTCCGCTATCAAGACCGACGAGATCTCCGTGGACAAGGAAACTCTCGACATGCTCTCCTCTCTCGGCATGGCTGACATGCCTGGGGTCAAGCGGGTCGACCCGGAAGCTCAGACTCAGAACCTCGGCGGGTTCGGGCGTGGTGGTCCCAGGAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

141

Amino Acids

16.08

Weight (kDa)

10.19

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 120	3.5e-60	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	4 cut(s)	9, 67, 201, 234
AciI	CCGC	8 cut(s)	7, 139, 178, 201, 241, 267, 355, 390
AclWI	GGATC	3 cut(s)	94, 175, 188
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	200
AjnI	CCWGG	4 cut(s)	42, 75, 343, 410
AluBI	AGCT	2 cut(s)	217, 371
AluI	AGCT	2 cut(s)	217, 371
AlwI	GGATC	3 cut(s)	94, 175, 188
AoxI	GGCC	2 cut(s)	4, 190
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	217
AspLEI	GCGC	3 cut(s)	69, 135, 234
AspS9I	GGNCC	4 cut(s)	4, 190, 191, 407
AsuC2I	CCSGG	2 cut(s)	194, 365
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	125
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 232, 266
BciT130I	CCWGG	4 cut(s)	44, 77, 345, 412
BcnI	CCSGG	2 cut(s)	194, 365
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	136
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	3 cut(s)	7, 218, 241
BlsI	GCNGC	3 cut(s)	8, 219, 242
Bme1390I	CCNGG	6 cut(s)	44, 77, 194, 345, 365, 412
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	4 cut(s)	4, 190, 191, 407
BmiI	GGNNCC	3 cut(s)	182, 192, 409
BmrFI	CCNGG	6 cut(s)	44, 77, 194, 345, 365, 412
BpuMI	CCSGG	2 cut(s)	194, 365
BsaJI	CCNNGG	5 cut(s)	75, 291, 344, 385, 410
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
BseBI	CCWGG	4 cut(s)	44, 77, 345, 412
BseDI	CCNNGG	5 cut(s)	75, 291, 344, 385, 410
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	386, 392
BseRI	GAGGAG	3 cut(s)	239, 242, 310
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	204
Bsh1236I	CGCG	4 cut(s)	9, 67, 201, 234
BshFI	GGCC	2 cut(s)	6, 192
BsiSI	CCGG	3 cut(s)	153, 194, 365
BslFI	GGGAC	2 cut(s)	239, 393
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	239, 393
BsnI	GGCC	2 cut(s)	6, 192
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	4 cut(s)	99, 147, 180, 285
BspACI	CCGC	8 cut(s)	7, 139, 178, 201, 241, 267, 355, 390
BspANI	GGCC	2 cut(s)	6, 192
BspCNI	CTCAG	2 cut(s)	385, 391
BspFNI	CGCG	4 cut(s)	9, 67, 201, 234
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	182, 192, 409
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	3 cut(s)	94, 175, 188
BssECI	CCNNGG	5 cut(s)	75, 291, 344, 385, 410
BssMI	GATC	4 cut(s)	99, 147, 180, 285
Bst2UI	CCWGG	4 cut(s)	44, 77, 345, 412
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	372, 378
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	4 cut(s)	9, 67, 201, 234
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	3 cut(s)	69, 135, 234
BstKTI	GATC	4 cut(s)	102, 150, 183, 288
BstMBI	GATC	4 cut(s)	99, 147, 180, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 198, 240
BstNI	CCWGG	4 cut(s)	44, 77, 345, 412
BstNSI	RCATGY	2 cut(s)	316, 343
BstSCI	CCNGG	6 cut(s)	42, 75, 192, 343, 363, 410
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	4 cut(s)	9, 67, 201, 234
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	99, 180, 285
BstYI	RGATCY	3 cut(s)	99, 180, 285
BsuRI	GGCC	2 cut(s)	6, 192
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	120
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	3 cut(s)	69, 135, 234
Cfr13I	GGNCC	4 cut(s)	4, 190, 191, 407
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	6 cut(s)	70, 172, 244, 313, 331, 340
CviJI	RGCY	5 cut(s)	6, 192, 217, 335, 371
CviKI_1	RGCY	5 cut(s)	6, 192, 217, 335, 371
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	372, 378
DpnI	GATC	4 cut(s)	101, 149, 182, 287
DpnII	GATC	4 cut(s)	99, 147, 180, 285
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	4 cut(s)	42, 75, 343, 410
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	6 cut(s)	73, 175, 247, 316, 334, 343
FaiI	YATR	6 cut(s)	71, 173, 245, 314, 332, 341
FaqI	GGGAC	2 cut(s)	239, 393
FatI	CATG	6 cut(s)	69, 171, 243, 312, 330, 339
FauI	CCCGC	2 cut(s)	348, 383
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	7, 218, 241
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	3 cut(s)	7, 218, 241
GlaI	GCGC	3 cut(s)	68, 134, 233
GluI	GCNGC	3 cut(s)	7, 218, 241
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	6, 192
HapII	CCGG	3 cut(s)	153, 194, 365
HhaI	GCGC	3 cut(s)	69, 135, 234
Hin1II	CATG	6 cut(s)	73, 175, 247, 316, 334, 343
Hin6I	GCGC	3 cut(s)	67, 133, 232
HinP1I	GCGC	3 cut(s)	67, 133, 232
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	156, 263, 376
HpaII	CCGG	3 cut(s)	153, 194, 365
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	295, 361
Hpy188I	TCNGA	2 cut(s)	375, 381
Hpy188III	TCNNGA	4 cut(s)	172, 184, 274, 308
Hpy8I	GTNNAC	2 cut(s)	295, 361
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	106, 220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 198, 240
HpyF3I	CTNAG	2 cut(s)	372, 378
Hsp92II	CATG	6 cut(s)	73, 175, 247, 316, 334, 343
HspAI	GCGC	3 cut(s)	67, 133, 232
Kzo9I	GATC	4 cut(s)	99, 147, 180, 285
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	204
MalI	GATC	4 cut(s)	101, 149, 182, 287
MboI	GATC	4 cut(s)	99, 147, 180, 285
MboII	GAAGA	3 cut(s)	40, 109, 272
MflI	RGATCY	3 cut(s)	99, 180, 285
MhlI	GDGCHC	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	272, 370
MnlI	CCTC	8 cut(s)	136, 146, 179, 217, 220, 331, 395, 408
MspI	CCGG	3 cut(s)	153, 194, 365
MspR9I	CCNGG	6 cut(s)	44, 77, 194, 345, 365, 412
MvaI	CCWGG	4 cut(s)	44, 77, 345, 412
MvnI	CGCG	4 cut(s)	9, 67, 201, 234
MwoI	GCNNNNNNNGC	3 cut(s)	12, 198, 240
NciI	CCSGG	2 cut(s)	194, 365
NdeII	GATC	4 cut(s)	99, 147, 180, 285
NlaIII	CATG	6 cut(s)	73, 175, 247, 316, 334, 343
NlaIV	GGNNCC	3 cut(s)	182, 192, 409
NmeAIII	GCCGAG	2 cut(s)	306, 366
NspI	RCATGY	2 cut(s)	316, 343
PagI	TCATGA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	8, 219, 242
PleI	GAGTC	2 cut(s)	271, 370
PpsI	GAGTC	2 cut(s)	271, 370
Psp6I	CCWGG	4 cut(s)	42, 75, 343, 410
PspGI	CCWGG	4 cut(s)	42, 75, 343, 410
PspN4I	GGNNCC	3 cut(s)	182, 192, 409
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	4 cut(s)	4, 190, 191, 407
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	3 cut(s)	99, 180, 285
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	359
SatI	GCNGC	3 cut(s)	7, 218, 241
Sau3AI	GATC	4 cut(s)	99, 147, 180, 285
Sau96I	GGNCC	4 cut(s)	4, 190, 191, 407
SchI	GAGTC	2 cut(s)	272, 370
ScrFI	CCNGG	6 cut(s)	44, 77, 194, 345, 365, 412
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	6 cut(s)	48, 171, 219, 373, 387, 419
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	407
SsiI	CCGC	8 cut(s)	7, 139, 178, 201, 241, 267, 355, 390
StyD4I	CCNGG	6 cut(s)	42, 75, 192, 343, 363, 410
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	51, 128, 309, 360
TaqII	GACCGA	1 cut(s)	293
TauI	GCSGC	2 cut(s)	9, 243
TfiI	GAWTC	1 cut(s)	156
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	280
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	407
XceI	RCATGY	2 cut(s)	316, 343
XmiI	GTMKAC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.