Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Forward (+)

13240616 .. 13241402

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGACGCGTCCGCACCAAAACCGTGAAGAAGTCCTCCCGCCAAGTCATCGAGCGGTACTACTCCCGCATGACCCTCGACTTCCACACTAACAAGAAGGTCCTGGAAGAAGTCGCCATCATCCCATCGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCGCGGCATCTCCCTCAAGCTTCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGATGAGTCTGCCATCAAGACTGACGACATCGCCGTCGACAAGGAGACTCTTGACATGCTCACTGCTCTCGGCATGGGTGATATTCCCGGTGTCAGGGTCGAATCCACTGATCTGCAGGCTGCTCCGGTCGGGTACGGCCGCGGCGGGCCCAGGAGTGGTGTTCACATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

144

Amino Acids

16.15

Weight (kDa)

9.98

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 120	1.5e-59	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	4 cut(s)	9, 201, 234, 399
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	59, 392
AfiI	CCNNNNNNNGG	3 cut(s)	200, 351, 413
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	2 cut(s)	102, 407
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	3 cut(s)	190, 394, 404
ApaI	GGGCCC	2 cut(s)	194, 408
ApeKI	GCWGC	1 cut(s)	377
AspLEI	GCGC	4 cut(s)	135, 180, 234, 240
AspS9I	GGNCC	5 cut(s)	100, 190, 191, 404, 405
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	2 cut(s)	194, 408
BanII	GRGCYC	2 cut(s)	194, 408
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	4 cut(s)	125, 133, 174, 278
BceAI	ACGGC	2 cut(s)	275, 409
BcgI	CGANNNNNNTGC	8 cut(s)	58, 92, 130, 164, 232, 248, 266, 282
BciT130I	CCWGG	2 cut(s)	104, 409
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	371
BfoI	RGCGCY	2 cut(s)	136, 241
BisI	GCNGC	5 cut(s)	202, 241, 378, 397, 400
BlsI	GCNGC	5 cut(s)	203, 242, 379, 398, 401
Bme1390I	CCNGG	3 cut(s)	104, 345, 409
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	5 cut(s)	100, 190, 191, 404, 405
BmiI	GGNNCC	3 cut(s)	192, 193, 406
BmrFI	CCNGG	3 cut(s)	104, 345, 409
BmsI	GCATC	2 cut(s)	189, 213
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	199, 397, 407
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 351, 413
BseBI	CCWGG	2 cut(s)	104, 409
BseDI	CCNNGG	3 cut(s)	199, 397, 407
BseGI	GGATG	2 cut(s)	120, 180
BseLI	CCNNNNNNNGG	3 cut(s)	200, 351, 413
BseRI	GAGGAG	2 cut(s)	239, 242
BseSI	GKGCMC	2 cut(s)	194, 408
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	4 cut(s)	9, 201, 234, 399
Bsh1285I	CGRYCG	2 cut(s)	387, 397
BshFI	GGCC	3 cut(s)	192, 396, 406
BsiEI	CGRYCG	2 cut(s)	387, 397
BsiSI	CCGG	3 cut(s)	153, 345, 383
BslFI	GGGAC	2 cut(s)	18, 239
BslI	CCNNNNNNNGG	3 cut(s)	200, 351, 413
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	18, 239
BsnI	GGCC	3 cut(s)	192, 396, 406
Bsp120I	GGGCCC	2 cut(s)	190, 404
Bsp1286I	GDGCHC	2 cut(s)	194, 408
Bsp143I	GATC	2 cut(s)	147, 367
BspANI	GGCC	3 cut(s)	192, 396, 406
BspFNI	CGCG	4 cut(s)	9, 201, 234, 399
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	192, 193, 406
BspMAI	CTGCAG	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	199, 397, 407
BssMI	GATC	2 cut(s)	147, 367
Bst2UI	CCWGG	2 cut(s)	104, 409
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	236, 375, 404
BstDSI	CCRYGG	2 cut(s)	199, 397
BstF5I	GGATG	2 cut(s)	120, 180
BstFNI	CGCG	4 cut(s)	9, 201, 234, 399
BstH2I	RGCGCY	2 cut(s)	136, 241
BstHHI	GCGC	4 cut(s)	135, 180, 234, 240
BstKTI	GATC	2 cut(s)	150, 370
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	147, 367
BstMCI	CGRYCG	2 cut(s)	387, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 240
BstNI	CCWGG	2 cut(s)	104, 409
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	102, 343, 407
BstSFI	CTRYAG	1 cut(s)	371
BstSLI	GKGCMC	2 cut(s)	194, 408
BstUI	CGCG	4 cut(s)	9, 201, 234, 399
BstV1I	GCAGC	1 cut(s)	364
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	192, 396, 406
BtgI	CCRYGG	2 cut(s)	199, 397
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	120, 180
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	318, 363
Cac8I	GCNNGC	3 cut(s)	236, 375, 404
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	4 cut(s)	135, 180, 234, 240
Cfr13I	GGNCC	5 cut(s)	100, 190, 191, 404, 405
Cfr42I	CCGCGG	2 cut(s)	202, 400
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	58, 391
CviAII	CATG	6 cut(s)	70, 172, 244, 313, 331, 424
CviJI	RGCY	5 cut(s)	192, 217, 377, 396, 406
CviKI_1	RGCY	5 cut(s)	192, 217, 377, 396, 406
CviQI	GTAC	2 cut(s)	58, 391
DpnI	GATC	2 cut(s)	149, 369
DpnII	GATC	2 cut(s)	147, 367
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
EclXI	CGGCCG	1 cut(s)	394
Eco24I	GRGCYC	2 cut(s)	194, 408
Eco47I	GGWCC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	203
EcoO109I	RGGNCCY	3 cut(s)	100, 190, 191
EcoRII	CCWGG	2 cut(s)	102, 407
EcoT38I	GRGCYC	2 cut(s)	194, 408
FaeI	CATG	6 cut(s)	73, 175, 247, 316, 334, 427
FaiI	YATR	6 cut(s)	71, 173, 245, 314, 332, 425
FaqI	GGGAC	2 cut(s)	18, 239
FatI	CATG	6 cut(s)	69, 171, 243, 312, 330, 423
FauI	CCCGC	3 cut(s)	47, 74, 395
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	202, 241, 378, 397, 400
FokI	GGATG	2 cut(s)	107, 167
FriOI	GRGCYC	2 cut(s)	194, 408
Fsp4HI	GCNGC	5 cut(s)	202, 241, 378, 397, 400
GlaI	GCGC	4 cut(s)	134, 179, 233, 239
GluI	GCNGC	5 cut(s)	202, 241, 378, 397, 400
HaeII	RGCGCY	2 cut(s)	136, 241
HaeIII	GGCC	3 cut(s)	192, 396, 406
HapII	CCGG	3 cut(s)	153, 345, 383
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	4 cut(s)	135, 180, 234, 240
Hin1II	CATG	6 cut(s)	73, 175, 247, 316, 334, 427
Hin6I	GCGC	4 cut(s)	133, 178, 232, 238
HinP1I	GCGC	4 cut(s)	133, 178, 232, 238
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	4 cut(s)	156, 263, 304, 359
HpaII	CCGG	3 cut(s)	153, 345, 383
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	295, 421
Hpy188III	TCNNGA	6 cut(s)	160, 172, 184, 221, 274, 308
Hpy8I	GTNNAC	2 cut(s)	295, 421
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	91, 181
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 240
Hsp92II	CATG	6 cut(s)	73, 175, 247, 316, 334, 427
HspAI	GCGC	4 cut(s)	133, 178, 232, 238
KspI	CCGCGG	2 cut(s)	202, 400
Kzo9I	GATC	2 cut(s)	147, 367
LmnI	GCTCC	2 cut(s)	229, 385
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	189, 213
MalI	GATC	2 cut(s)	149, 369
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	147, 367
MboII	GAAGA	2 cut(s)	40, 119
MhlI	GDGCHC	2 cut(s)	194, 408
MluI	ACGCGT	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	272, 298
MnlI	CCTC	6 cut(s)	46, 86, 146, 217, 220, 221
MspA1I	CMGCKG	2 cut(s)	201, 399
MspI	CCGG	3 cut(s)	153, 345, 383
MspR9I	CCNGG	3 cut(s)	104, 345, 409
MvaI	CCWGG	2 cut(s)	104, 409
MvnI	CGCG	4 cut(s)	9, 201, 234, 399
MwoI	GCNNNNNNNGC	2 cut(s)	198, 240
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	147, 367
NlaIII	CATG	6 cut(s)	73, 175, 247, 316, 334, 427
NlaIV	GGNNCC	3 cut(s)	192, 193, 406
NmeAIII	GCCGAG	1 cut(s)	306
NspI	RCATGY	1 cut(s)	316
PagI	TCATGA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	156, 359
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	5 cut(s)	203, 242, 379, 398, 401
PleI	GAGTC	2 cut(s)	271, 298
PpsI	GAGTC	2 cut(s)	271, 298
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	102, 407
PspGI	CCWGG	2 cut(s)	102, 407
PspN4I	GGNNCC	3 cut(s)	192, 193, 406
PspOMI	GGGCCC	2 cut(s)	190, 404
PspPI	GGNCC	5 cut(s)	100, 190, 191, 404, 405
PspPPI	RGGWCCY	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	59, 392
RsaNI	GTAC	2 cut(s)	58, 391
SacII	CCGCGG	2 cut(s)	202, 400
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	5 cut(s)	202, 241, 378, 397, 400
Sau3AI	GATC	2 cut(s)	147, 367
Sau96I	GGNCC	5 cut(s)	100, 190, 191, 404, 405
SchI	GAGTC	2 cut(s)	272, 298
ScrFI	CCNGG	3 cut(s)	104, 345, 409
SduI	GDGCHC	2 cut(s)	194, 408
SetI	ASST	2 cut(s)	102, 219
SfaNI	GCATC	2 cut(s)	189, 213
SfcI	CTRYAG	1 cut(s)	371
Sfr303I	CCGCGG	2 cut(s)	202, 400
SgrBI	CCGCGG	2 cut(s)	202, 400
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	102, 343, 407
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	6 cut(s)	51, 78, 128, 161, 294, 357
TauI	GCSGC	4 cut(s)	204, 243, 399, 402
TfiI	GAWTC	2 cut(s)	156, 359
TscAI	CASTG	2 cut(s)	325, 370
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	325, 370
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.