Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Forward (+)

10832655 .. 10834162

Gene Structure 1508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G071300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGTCGTGTTCGTACCAAGACTGTGAAGAAGTCCTCACGCCAGGTGATCGAGAGGTACTACTCAAAGATGACCTTGGACTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCAATCATCCCCTCAAAACGTCTCCGGAACAAGATTGCTGGGTTCTCCACTCACCTGATGAAGCGGATTCAAAAGGGTCCAGTCAGGGGTATCTCACTGAAACTGCAGGAAGAAGAGCGCGAGCGTCGCATGGACTATGTACCTGAACAATCTGCCATCAGGACTGAAGAAATCAAGGTCGATAAGGAGACCCTTGACATGCTTGCTGCTCTTGGCATGGCTGATCTTCCTGGGGTATCTGAAGCTGAGCCACAGGTTATGATCCCTAGCCAAGGTTATGGACGGGGTCCACAGGGTGGAAGGAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

10.03

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccII	CGCG	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	370
AcuI	CTGAAG	2 cut(s)	300, 375
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	3 cut(s)	16, 59, 255
AfiI	CCNNNNNNNGG	3 cut(s)	200, 386, 410
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	42, 343
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	140, 296
AlwI	GGATC	1 cut(s)	370
Aor13HI	TCCGGA	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	191, 401
AsuHPI	GGTGA	2 cut(s)	58, 158
AvaII	GGWCC	2 cut(s)	191, 401
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	44, 345
BcoDI	GTCTC	2 cut(s)	140, 296
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	218
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	1 cut(s)	321
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	44, 345
Bme18I	GGWCC	2 cut(s)	191, 401
BmgT120I	GGNCC	2 cut(s)	191, 401
BmiI	GGNNCC	2 cut(s)	192, 402
BmrFI	CCNGG	2 cut(s)	44, 345
Bpu1102I	GCTNAGC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	75, 344, 385
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 386, 410
Bse1I	ACTGG	1 cut(s)	194
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	44, 345
BseDI	CCNNGG	3 cut(s)	75, 344, 385
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	200, 386, 410
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	200, 386, 410
BsmAI	GTCTC	2 cut(s)	140, 296
BsmBI	CGTCTC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	48, 99, 337, 375
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	192, 402
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	75, 344, 385
BssMI	GATC	4 cut(s)	48, 99, 337, 375
BssT1I	CCWWGG	2 cut(s)	75, 385
Bst2UI	CCWGG	2 cut(s)	44, 345
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	2 cut(s)	102, 222
BstC8I	GCNNGC	2 cut(s)	236, 318
BstDEI	CTNAG	1 cut(s)	360
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	4 cut(s)	51, 102, 340, 378
BstMAI	GTCTC	2 cut(s)	140, 296
BstMBI	GATC	4 cut(s)	48, 99, 337, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	2 cut(s)	44, 345
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	42, 343
BstSFI	CTRYAG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	236, 318
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	191, 401
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	15, 58, 254
CviAII	CATG	3 cut(s)	244, 313, 331
CviJI	RGCY	4 cut(s)	335, 359, 364, 384
CviKI_1	RGCY	4 cut(s)	335, 359, 364, 384
CviQI	GTAC	3 cut(s)	15, 58, 254
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	4 cut(s)	50, 101, 339, 377
DpnII	GATC	4 cut(s)	48, 99, 337, 375
DraIII	CACNNNGTG	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	102, 222
EarI	CTCTTC	2 cut(s)	102, 222
Eco130I	CCWWGG	2 cut(s)	75, 385
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	191, 401
Eco57I	CTGAAG	2 cut(s)	300, 375
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	42, 343
EcoT14I	CCWWGG	2 cut(s)	75, 385
ErhI	CCWWGG	2 cut(s)	75, 385
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	247, 316, 334
FaiI	YATR	6 cut(s)	245, 252, 314, 332, 374, 393
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 86, 118
FatI	CATG	3 cut(s)	243, 312, 330
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	247, 316, 334
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	58, 158
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	355, 425
Hpy188III	TCNNGA	3 cut(s)	52, 139, 274
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	116, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	3 cut(s)	247, 316, 334
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	48, 99, 337, 375
LguI	GCTCTTC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	133
MalI	GATC	4 cut(s)	50, 101, 339, 377
MboI	GATC	4 cut(s)	48, 99, 337, 375
MboII	GAAGA	7 cut(s)	40, 109, 119, 236, 239, 293, 332
MflI	RGATCY	1 cut(s)	99
MnlI	CCTC	5 cut(s)	46, 48, 103, 136, 411
MroI	TCCGGA	1 cut(s)	138
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	44, 345
MvaI	CCWGG	2 cut(s)	44, 345
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	4 cut(s)	48, 99, 337, 375
NlaIII	CATG	3 cut(s)	247, 316, 334
NlaIV	GGNNCC	2 cut(s)	192, 402
NspI	RCATGY	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	42, 343
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	42, 343
PspN4I	GGNNCC	2 cut(s)	192, 402
PspPI	GGNCC	2 cut(s)	191, 401
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	399
RsaI	GTAC	3 cut(s)	16, 59, 255
RsaNI	GTAC	3 cut(s)	15, 58, 254
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	48, 99, 337, 375
Sau96I	GGNCC	2 cut(s)	191, 401
ScrFI	CCNGG	2 cut(s)	44, 345
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	191, 401
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	42, 343
StyI	CCWWGG	2 cut(s)	75, 385
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	51, 294
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	216
Tth111I	GACNNNGTC	1 cut(s)	399
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	191, 401
XagI	CCTNNNNNAGG	1 cut(s)	384
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.