Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Reverse (-)

12026641 .. 12027159

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0146800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGAGAACTAGAGAAGAGGTTGTTGGTGTAAACATGGAAAAAGTTCTTATGCTACTATCGTGTAGGTTAGAAACCAAGTTCAAAAGATGTTCATCTTCCTCAAACTATGTGTTCGAGTGCAAAACCTGCAACCGCCAATTCCCATCGTTCCAAGCTCTTGGTGGCCACAGAGCAAGCCACAGGAAGCCAAGAACGTTAACAAGCTGCGATCAAGACCCAAAAAGTGAGACCAAATTGGTGCAAGGCAAGCCAAAAAAACACGAGTGCTCTGTATGTGGGTTGGAGTTTAGTTCGGGACAAGCTTTGGGGGGTCATATGAGAAGGCACAGAAAGATGAACGCCCGATTTTATTCTTCAGTTCCTTCTGCTGTTGCTTCGAAGATTCCAGTGCTGTTGAGGTCGAATAGTAAGAGGGTGATGTGTTTGGACATGGACCTGAACTTGACGCCTTTAGAGAATGACTTGAAGTTGCTGTTTGGGAATATGCCACCAAAAATTGATACTTTGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

172

Amino Acids

19.44

Weight (kDa)

9.8

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 64	1.1e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	88 - 112	6.9e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AciI	CCGC	1 cut(s)	136
AclI	AACGTT	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	449
AgsI	TTSAA	2 cut(s)	85, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	158, 207, 305
AluI	AGCT	3 cut(s)	158, 207, 305
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	168
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
Bpu14I	TTCGAA	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	389
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	449
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	178, 251
BstDEI	CTNAG	1 cut(s)	516
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 250
BstV1I	GCAGC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	396
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	178, 251
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	1 cut(s)	457
CviAII	CATG	2 cut(s)	37, 433
CviJI	RGCY	7 cut(s)	158, 168, 180, 190, 207, 253, 305
CviKI_1	RGCY	7 cut(s)	158, 168, 180, 190, 207, 253, 305
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	342
FaeI	CATG	2 cut(s)	40, 436
FaiI	YATR	8 cut(s)	38, 53, 111, 277, 318, 320, 434, 488
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	2 cut(s)	36, 432
FauNDI	CATATG	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	168
HgaI	GACGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	40, 436
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	1 cut(s)	385
HpaI	GTTAAC	1 cut(s)	201
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	34, 201
Hpy188III	TCNNGA	2 cut(s)	215, 297
Hpy8I	GTNNAC	2 cut(s)	34, 201
HpyAV	CCTTC	2 cut(s)	318, 375
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	123, 132, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 250
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	40, 436
KspAI	GTTAAC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	142, 169, 402, 452
Lsp1109I	GCAGC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	197
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	16, 29, 90, 348, 394
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	140, 236, 498
MluNI	TGGCCA	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	4 cut(s)	13, 112, 393, 408
Mox20I	TGGCCA	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	129, 250
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	40, 436
NspV	TTCGAA	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	9 cut(s)	24, 71, 131, 160, 200, 209, 307, 404, 441
SfuI	TTCGAA	1 cut(s)	380
SinI	GGWCC	1 cut(s)	436
Sse9I	AATT	3 cut(s)	140, 236, 498
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	117, 380, 404
TasI	AATT	3 cut(s)	140, 236, 498
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	1 cut(s)	207
TspDTI	ATGAA	3 cut(s)	17, 84, 353
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.