Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003093.1

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Forward (+)

120143 .. 120565

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003093.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgggacgcgtccgcacgaagaccgtgaagaagtcctcccggcaggtgatcgagcggtactactcgcgcatgacgctggacttccacaccaacaagaaggtcctggaggaagtggccatcatcccgtcgaagcgcctccgcaacaagatcgccggattctcgacccatctcatgaagcgcatccagaagggccccgtccgcggcatctccctcaagctccaggaggaggagcgcgagcgccgcatggacttcgtccccgacgagtccgccatcaagaccgacgagatcgccgtcgacaaggagaccctcgacatgctcactgctctcggcatggcggatattcccggagtcaagaaggtggatccctctgatctccagactgcgcccgtcgggttcggccgcggcggccccaggaggtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

140

Amino Acids

15.96

Weight (kDa)

10.03

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	5 cut(s)	9, 67, 201, 234, 402
AclWI	GGATC	2 cut(s)	356, 369
AcoI	YGGCCR	2 cut(s)	114, 397
AfaI	GTAC	2 cut(s)	59, 419
AfiI	CCNNNNNNNGG	2 cut(s)	200, 226
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	3 cut(s)	102, 219, 410
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	356, 369
AoxI	GGCC	4 cut(s)	114, 190, 397, 406
ApaI	GGGCCC	1 cut(s)	194
AspLEI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
AspS9I	GGNCC	4 cut(s)	100, 190, 191, 407
AsuC2I	CCSGG	2 cut(s)	40, 345
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	26
BccI	CCATC	3 cut(s)	125, 174, 278
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 232, 266
BciT130I	CCWGG	3 cut(s)	104, 221, 412
BcnI	CCSGG	2 cut(s)	40, 345
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	421
BfoI	RGCGCY	2 cut(s)	136, 241
BfuAI	ACCTGC	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
BlsI	GCNGC	5 cut(s)	203, 242, 401, 404, 407
Bme1390I	CCNGG	5 cut(s)	40, 104, 221, 345, 412
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	4 cut(s)	100, 190, 191, 407
BmiI	GGNNCC	4 cut(s)	192, 193, 363, 409
BmrFI	CCNGG	5 cut(s)	40, 104, 221, 345, 412
BmsI	GCATC	2 cut(s)	189, 213
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	3 cut(s)	125, 203, 359
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	40, 345
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	199, 400, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 226
BseBI	CCWGG	3 cut(s)	104, 221, 412
BseDI	CCNNGG	3 cut(s)	199, 400, 410
BseGI	GGATG	2 cut(s)	120, 180
BseLI	CCNNNNNNNGG	2 cut(s)	200, 226
BseRI	GAGGAG	2 cut(s)	239, 242
BseSI	GKGCMC	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	397
Bsh1236I	CGCG	5 cut(s)	9, 67, 201, 234, 402
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	4 cut(s)	116, 192, 399, 408
BsiEI	CGRYCG	1 cut(s)	400
BsiSI	CCGG	3 cut(s)	40, 153, 345
BslFI	GGGAC	2 cut(s)	18, 239
BslI	CCNNNNNNNGG	2 cut(s)	200, 226
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	18, 239
BsnI	GGCC	4 cut(s)	116, 192, 399, 408
Bso31I	GGTCTC	1 cut(s)	296
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	48, 147, 285, 361, 370
BspANI	GGCC	4 cut(s)	116, 192, 399, 408
BspFNI	CGCG	5 cut(s)	9, 67, 201, 234, 402
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	192, 193, 363, 409
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	356, 369
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	199, 400, 410
BssMI	GATC	5 cut(s)	48, 147, 285, 361, 370
Bst2UI	CCWGG	3 cut(s)	104, 221, 412
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	236
BstDSI	CCRYGG	2 cut(s)	199, 400
BstF5I	GGATG	2 cut(s)	120, 180
BstFNI	CGCG	5 cut(s)	9, 67, 201, 234, 402
BstH2I	RGCGCY	2 cut(s)	136, 241
BstHHI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
BstKTI	GATC	5 cut(s)	51, 150, 288, 364, 373
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	48, 147, 285, 361, 370
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 198, 240, 405
BstNI	CCWGG	3 cut(s)	104, 221, 412
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	5 cut(s)	38, 102, 219, 343, 410
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	5 cut(s)	9, 67, 201, 234, 402
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	116, 192, 399, 408
BtgI	CCRYGG	2 cut(s)	199, 400
BtsCI	GGATG	2 cut(s)	120, 180
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
Cfr13I	GGNCC	4 cut(s)	100, 190, 191, 407
Cfr42I	CCGCGG	2 cut(s)	202, 403
CseI	GACGC	2 cut(s)	15, 82
Csp6I	GTAC	2 cut(s)	58, 418
CviAII	CATG	5 cut(s)	70, 172, 244, 313, 331
CviJI	RGCY	5 cut(s)	116, 192, 217, 399, 408
CviKI_1	RGCY	5 cut(s)	116, 192, 217, 399, 408
CviQI	GTAC	2 cut(s)	58, 418
DpnI	GATC	5 cut(s)	50, 149, 287, 363, 372
DpnII	GATC	5 cut(s)	48, 147, 285, 361, 370
EaeI	YGGCCR	2 cut(s)	114, 397
EagI	CGGCCG	1 cut(s)	397
EciI	GGCGGA	2 cut(s)	256, 350
EclXI	CGGCCG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	397
EcoO109I	RGGNCCY	3 cut(s)	100, 190, 191
EcoRII	CCWGG	3 cut(s)	102, 219, 410
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	5 cut(s)	73, 175, 247, 316, 334
FaiI	YATR	5 cut(s)	71, 173, 245, 314, 332
FaqI	GGGAC	2 cut(s)	18, 239
FatI	CATG	5 cut(s)	69, 171, 243, 312, 330
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
FokI	GGATG	2 cut(s)	107, 167
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
FspBI	CTAG	1 cut(s)	421
GlaI	GCGC	6 cut(s)	68, 134, 179, 233, 239, 384
GluI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
GsuI	CTGGAG	3 cut(s)	125, 203, 359
HaeII	RGCGCY	2 cut(s)	136, 241
HaeIII	GGCC	4 cut(s)	116, 192, 399, 408
HapII	CCGG	3 cut(s)	40, 153, 345
HgaI	GACGC	2 cut(s)	15, 82
HhaI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
Hin1II	CATG	5 cut(s)	73, 175, 247, 316, 334
Hin6I	GCGC	6 cut(s)	67, 133, 178, 232, 238, 383
HinP1I	GCGC	6 cut(s)	67, 133, 178, 232, 238, 383
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	156, 263, 348
HpaII	CCGG	3 cut(s)	40, 153, 345
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	6 cut(s)	160, 172, 184, 274, 352, 376
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	5 cut(s)	130, 263, 284, 296, 392
HpyAV	CCTTC	3 cut(s)	91, 181, 349
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 198, 240, 405
Hsp92II	CATG	5 cut(s)	73, 175, 247, 316, 334
HspAI	GCGC	6 cut(s)	67, 133, 178, 232, 238, 383
KspI	CCGCGG	2 cut(s)	202, 403
Kzo9I	GATC	5 cut(s)	48, 147, 285, 361, 370
LmnI	GCTCC	2 cut(s)	222, 229
LweI	GCATC	2 cut(s)	189, 213
MaeI	CTAG	1 cut(s)	421
MalI	GATC	5 cut(s)	50, 149, 287, 363, 372
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	48, 147, 285, 361, 370
MboII	GAAGA	2 cut(s)	31, 40
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	194
MlsI	TGGCCA	1 cut(s)	116
MluI	ACGCGT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	272, 357
MnlI	CCTC	9 cut(s)	46, 100, 146, 217, 220, 221, 317, 376, 408
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	201, 402
MspI	CCGG	3 cut(s)	40, 153, 345
MspR9I	CCNGG	5 cut(s)	40, 104, 221, 345, 412
MvaI	CCWGG	3 cut(s)	104, 221, 412
MvnI	CGCG	5 cut(s)	9, 67, 201, 234, 402
MwoI	GCNNNNNNNGC	4 cut(s)	73, 198, 240, 405
NciI	CCSGG	2 cut(s)	40, 345
NdeII	GATC	5 cut(s)	48, 147, 285, 361, 370
NlaIII	CATG	5 cut(s)	73, 175, 247, 316, 334
NlaIV	GGNNCC	4 cut(s)	192, 193, 363, 409
NmeAIII	GCCGAG	1 cut(s)	306
NspI	RCATGY	1 cut(s)	316
PagI	TCATGA	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 288
PfeI	GAWTC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	3 cut(s)	102, 219, 343
PkrI	GCNGC	5 cut(s)	203, 242, 401, 404, 407
PleI	GAGTC	2 cut(s)	271, 356
PpsI	GAGTC	2 cut(s)	271, 356
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	102, 219, 410
PspGI	CCWGG	3 cut(s)	102, 219, 410
PspN4I	GGNNCC	4 cut(s)	192, 193, 363, 409
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	4 cut(s)	100, 190, 191, 407
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	59, 419
RsaNI	GTAC	2 cut(s)	58, 418
SacII	CCGCGG	2 cut(s)	202, 403
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
Sau3AI	GATC	5 cut(s)	48, 147, 285, 361, 370
Sau96I	GGNCC	4 cut(s)	100, 190, 191, 407
SchI	GAGTC	2 cut(s)	272, 357
ScrFI	CCNGG	5 cut(s)	40, 104, 221, 345, 412
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	5 cut(s)	48, 102, 219, 360, 419
SfaNI	GCATC	2 cut(s)	189, 213
SfiI	GGCCNNNNNGGCC	1 cut(s)	405
Sfr303I	CCGCGG	2 cut(s)	202, 403
SgrBI	CCGCGG	2 cut(s)	202, 403
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SspMI	CTAG	1 cut(s)	421
StyD4I	CCNGG	5 cut(s)	38, 102, 219, 343, 410
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	5 cut(s)	51, 128, 161, 294, 309
TaqII	GACCGA	1 cut(s)	293
TauI	GCSGC	5 cut(s)	204, 243, 402, 405, 408
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.