Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Reverse (-)

12177676 .. 12178434

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGACGCGTCCGCACCAAGACCGTGAAGAAGTCCTCCCGGCAGGTGATCGAGCGGTACTACTCCCGCATGACCCTTGACTTCCACACCAACAAGAAGGTCCTCGAAGAGGTGGCCATCATCCCATCGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCGCGGCATCTCCCTCAAGCTTCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGAGTCCGCCATCAAGACCGACGACATCGCCGTCGACAAGGAGACTCTTGACATGCTCACTGCTCTCGGCATGGCTGATATTCCCGGCCTCAGGGAGTCCACCGAACTGCAGGCTGCTCCTGTCGGGTACGGCCGTGGCGGGCCCAGGAGGCTGATGGATTGGGCTGTTAGTTTGTTGTTAGGACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

9.93

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 119	6.2e-59	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	3 cut(s)	9, 201, 234
AciI	CCGC	9 cut(s)	13, 55, 67, 139, 199, 201, 241, 267, 399
AcoI	YGGCCR	2 cut(s)	114, 391
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	59, 389
AfiI	CCNNNNNNNGG	3 cut(s)	109, 200, 351
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	5 cut(s)	114, 190, 346, 391, 401
ApaI	GGGCCC	2 cut(s)	194, 405
ApeKI	GCWGC	1 cut(s)	374
AspLEI	GCGC	4 cut(s)	135, 180, 234, 240
AspS9I	GGNCC	6 cut(s)	100, 190, 191, 401, 402, 443
AsuC2I	CCSGG	2 cut(s)	40, 345
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	100, 443
AxyI	CCTNAGG	1 cut(s)	350
BaeGI	GKGCMC	2 cut(s)	194, 405
BaeI	ACNNNNGTAYC	2 cut(s)	379, 412
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	194, 405
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	5 cut(s)	125, 133, 174, 278, 409
BceAI	ACGGC	3 cut(s)	275, 378, 406
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 232, 266
BciT130I	CCWGG	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	40, 345
BcoDI	GTCTC	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	368
BfoI	RGCGCY	2 cut(s)	136, 241
BfuAI	ACCTGC	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	202, 241, 375
BlsI	GCNGC	3 cut(s)	203, 242, 376
Bme1390I	CCNGG	3 cut(s)	40, 345, 406
Bme18I	GGWCC	2 cut(s)	100, 443
BmgT120I	GGNCC	6 cut(s)	100, 190, 191, 401, 402, 443
BmiI	GGNNCC	3 cut(s)	192, 193, 403
BmrFI	CCNGG	3 cut(s)	40, 345, 406
BmsI	GCATC	2 cut(s)	189, 213
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	40, 345
BsaJI	CCNNGG	3 cut(s)	199, 394, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 200, 351
Bse21I	CCTNAGG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	3 cut(s)	199, 394, 404
BseGI	GGATG	2 cut(s)	120, 180
BseLI	CCNNNNNNNGG	3 cut(s)	109, 200, 351
BseMII	CTCAG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	239, 242
BseSI	GKGCMC	2 cut(s)	194, 405
BseX3I	CGGCCG	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	3 cut(s)	9, 201, 234
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	5 cut(s)	116, 192, 348, 393, 403
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	3 cut(s)	40, 153, 345
BslFI	GGGAC	2 cut(s)	18, 239
BslI	CCNNNNNNNGG	3 cut(s)	109, 200, 351
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	18, 239
BsnI	GGCC	5 cut(s)	116, 192, 348, 393, 403
Bsp120I	GGGCCC	2 cut(s)	190, 401
Bsp1286I	GDGCHC	2 cut(s)	194, 405
Bsp143I	GATC	2 cut(s)	48, 147
BspACI	CCGC	9 cut(s)	13, 55, 67, 139, 199, 201, 241, 267, 399
BspANI	GGCC	5 cut(s)	116, 192, 348, 393, 403
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	3 cut(s)	9, 201, 234
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	192, 193, 403
BspMAI	CTGCAG	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	199, 394, 404
BssMI	GATC	2 cut(s)	48, 147
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	236, 372, 401
BstDEI	CTNAG	2 cut(s)	350, 447
BstDSI	CCRYGG	2 cut(s)	199, 394
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	120, 180
BstFNI	CGCG	3 cut(s)	9, 201, 234
BstH2I	RGCGCY	2 cut(s)	136, 241
BstHHI	GCGC	4 cut(s)	135, 180, 234, 240
BstKTI	GATC	2 cut(s)	51, 150
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	48, 147
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 240, 409
BstNI	CCWGG	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	38, 343, 404
BstSFI	CTRYAG	1 cut(s)	368
BstSLI	GKGCMC	2 cut(s)	194, 405
BstUI	CGCG	3 cut(s)	9, 201, 234
BstV1I	GCAGC	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	391
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	5 cut(s)	116, 192, 348, 393, 403
BtgI	CCRYGG	2 cut(s)	199, 394
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	120, 180
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	3 cut(s)	236, 372, 401
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	4 cut(s)	135, 180, 234, 240
Cfr13I	GGNCC	6 cut(s)	100, 190, 191, 401, 402, 443
Cfr42I	CCGCGG	1 cut(s)	202
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	58, 388
CviAII	CATG	5 cut(s)	70, 172, 244, 313, 331
CviQI	GTAC	2 cut(s)	58, 388
DdeI	CTNAG	2 cut(s)	350, 447
DpnI	GATC	2 cut(s)	50, 149
DpnII	GATC	2 cut(s)	48, 147
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	114, 391
EagI	CGGCCG	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	256
EclXI	CGGCCG	1 cut(s)	391
Eco24I	GRGCYC	2 cut(s)	194, 405
Eco47I	GGWCC	2 cut(s)	100, 443
Eco52I	CGGCCG	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoO109I	RGGNCCY	4 cut(s)	100, 190, 191, 443
EcoRII	CCWGG	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	194, 405
FaeI	CATG	5 cut(s)	73, 175, 247, 316, 334
FaiI	YATR	5 cut(s)	71, 173, 245, 314, 332
FaqI	GGGAC	2 cut(s)	18, 239
FatI	CATG	5 cut(s)	69, 171, 243, 312, 330
FauI	CCCGC	2 cut(s)	74, 392
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	202, 241, 375
FokI	GGATG	2 cut(s)	107, 167
FriOI	GRGCYC	2 cut(s)	194, 405
Fsp4HI	GCNGC	3 cut(s)	202, 241, 375
GlaI	GCGC	4 cut(s)	134, 179, 233, 239
GluI	GCNGC	3 cut(s)	202, 241, 375
HaeII	RGCGCY	2 cut(s)	136, 241
HaeIII	GGCC	5 cut(s)	116, 192, 348, 393, 403
HapII	CCGG	3 cut(s)	40, 153, 345
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	4 cut(s)	135, 180, 234, 240
Hin1II	CATG	5 cut(s)	73, 175, 247, 316, 334
Hin6I	GCGC	4 cut(s)	133, 178, 232, 238
HinP1I	GCGC	4 cut(s)	133, 178, 232, 238
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	4 cut(s)	156, 263, 304, 356
HpaII	CCGG	3 cut(s)	40, 153, 345
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	295, 360
Hpy188III	TCNNGA	6 cut(s)	160, 172, 184, 221, 274, 308
Hpy8I	GTNNAC	2 cut(s)	295, 360
Hpy99I	CGWCG	3 cut(s)	263, 284, 296
HpyAV	CCTTC	2 cut(s)	91, 181
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 240, 409
HpyF3I	CTNAG	2 cut(s)	350, 447
Hsp92II	CATG	5 cut(s)	73, 175, 247, 316, 334
HspAI	GCGC	4 cut(s)	133, 178, 232, 238
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	48, 147
LmnI	GCTCC	2 cut(s)	229, 382
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	2 cut(s)	189, 213
MalI	GATC	2 cut(s)	50, 149
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	48, 147
MboII	GAAGA	2 cut(s)	40, 119
MhlI	GDGCHC	2 cut(s)	194, 405
MlsI	TGGCCA	1 cut(s)	116
MluI	ACGCGT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	272, 298, 365
MnlI	CCTC	9 cut(s)	46, 103, 113, 146, 217, 220, 221, 359, 402
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	3 cut(s)	40, 153, 345
MspR9I	CCNGG	3 cut(s)	40, 345, 406
MvaI	CCWGG	1 cut(s)	406
MvnI	CGCG	3 cut(s)	9, 201, 234
MwoI	GCNNNNNNNGC	3 cut(s)	198, 240, 409
NciI	CCSGG	2 cut(s)	40, 345
NdeII	GATC	2 cut(s)	48, 147
NlaIII	CATG	5 cut(s)	73, 175, 247, 316, 334
NlaIV	GGNNCC	3 cut(s)	192, 193, 403
NmeAIII	GCCGAG	1 cut(s)	306
NspI	RCATGY	1 cut(s)	316
PagI	TCATGA	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 288
PfeI	GAWTC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	203, 242, 376
PleI	GAGTC	3 cut(s)	271, 298, 364
PpsI	GAGTC	3 cut(s)	271, 298, 364
PpuMI	RGGWCCY	2 cut(s)	100, 443
Psp5II	RGGWCCY	2 cut(s)	100, 443
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	192, 193, 403
PspOMI	GGGCCC	2 cut(s)	190, 401
PspPI	GGNCC	6 cut(s)	100, 190, 191, 401, 402, 443
PspPPI	RGGWCCY	2 cut(s)	100, 443
PstI	CTGCAG	1 cut(s)	372
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	59, 389
RsaNI	GTAC	2 cut(s)	58, 388
SacII	CCGCGG	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	3 cut(s)	202, 241, 375
Sau3AI	GATC	2 cut(s)	48, 147
Sau96I	GGNCC	6 cut(s)	100, 190, 191, 401, 402, 443
SchI	GAGTC	3 cut(s)	272, 298, 365
ScrFI	CCNGG	3 cut(s)	40, 345, 406
SduI	GDGCHC	2 cut(s)	194, 405
SetI	ASST	5 cut(s)	48, 102, 114, 219, 448
SfaNI	GCATC	2 cut(s)	189, 213
SfcI	CTRYAG	1 cut(s)	368
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	100, 443
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SsiI	CCGC	9 cut(s)	13, 55, 67, 139, 199, 201, 241, 267, 399
StyD4I	CCNGG	3 cut(s)	38, 343, 404
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	5 cut(s)	51, 105, 128, 161, 294
TaqII	GACCGA	1 cut(s)	293
TauI	GCSGC	2 cut(s)	204, 243
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	100, 443
XagI	CCTNNNNNAGG	1 cut(s)	107
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.