Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Reverse (-)

11458949 .. 11459370

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGTCGTGTTCGCACCAAGACAGTGAAGAAGTCCTCACGCCAGGTGATTGAGAGGCTCCGCAACAAGATTGCTGGATTCTCCACTCACCTGATGAAGCGCATTCAAAAGGGTCCTGTTAGGGGTATCTCGCTGAAGCTGCAGGAAGAAGAGCGTGAGCGTCGCATGGACTTTGTACCTGAGGAGTCTGCTATCAGGATTGATGACATCAAGGTTGATAAGGAGACCCTGGACATGCTTTCTGCTCTTGGCATGTCTGAAATTCCTGGGGTATCTGAAGCTGAGCCACAGGTTGTGATTCCTAGCCAAGGATATGGACGCGGTCCACAGGGAAGGAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

114

Amino Acids

12.96

Weight (kDa)

10.14

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	19 - 94	3.1e-31	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	61, 321
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	155, 297
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	122, 308
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	3 cut(s)	42, 228, 265
AluBI	AGCT	2 cut(s)	139, 281
AluI	AGCT	2 cut(s)	139, 281
Alw26I	GTCTC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	113, 323
AsuHPI	GGTGA	2 cut(s)	58, 80
AvaII	GGWCC	2 cut(s)	113, 323
AxyI	CCTNAGG	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	126
BciT130I	CCWGG	3 cut(s)	44, 230, 267
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	44, 230, 267
Bme18I	GGWCC	2 cut(s)	113, 323
BmgT120I	GGNCC	2 cut(s)	113, 323
BmiI	GGNNCC	2 cut(s)	59, 114
BmrFI	CCNGG	3 cut(s)	44, 230, 267
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	228, 266, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 308
Bse21I	CCTNAGG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	44, 230, 267
BseDI	CCNNGG	3 cut(s)	228, 266, 307
BseLI	CCNNNNNNNGG	2 cut(s)	122, 308
BseMII	CTCAG	2 cut(s)	171, 273
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	122, 308
BsmAI	GTCTC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	218
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	2 cut(s)	61, 321
BspCNI	CTCAG	2 cut(s)	172, 274
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	59, 114
BspMAI	CTGCAG	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	228, 266, 307
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	3 cut(s)	44, 230, 267
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	180, 282
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	3 cut(s)	44, 230, 267
BstNSI	RCATGY	2 cut(s)	238, 256
BstSCI	CCNGG	3 cut(s)	42, 228, 265
BstSFI	CTRYAG	1 cut(s)	140
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	30
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	113, 323
CseI	GACGC	2 cut(s)	149, 327
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	3 cut(s)	166, 235, 253
CviJI	RGCY	5 cut(s)	58, 139, 281, 286, 306
CviKI_1	RGCY	5 cut(s)	58, 139, 281, 286, 306
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	180, 282
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	113, 323
Eco57I	CTGAAG	2 cut(s)	155, 297
Eco81I	CCTNAGG	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	3 cut(s)	42, 228, 265
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	169, 238, 256
FaiI	YATR	4 cut(s)	167, 236, 254, 315
FatI	CATG	3 cut(s)	165, 234, 252
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	140
HgaI	GACGC	2 cut(s)	149, 327
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	169, 238, 256
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	78, 185, 298
HphI	GGTGA	2 cut(s)	58, 80
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	259, 277
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	180, 282
Hsp92II	CATG	3 cut(s)	169, 238, 256
HspAI	GCGC	1 cut(s)	100
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	303
MboII	GAAGA	3 cut(s)	40, 158, 161
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	4 cut(s)	46, 48, 175, 330
MseI	TTAA	1 cut(s)	343
MspR9I	CCNGG	3 cut(s)	44, 230, 267
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	3 cut(s)	44, 230, 267
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	139
NlaIII	CATG	3 cut(s)	169, 238, 256
NlaIV	GGNNCC	2 cut(s)	59, 114
NspI	RCATGY	2 cut(s)	238, 256
PciSI	GCTCTTC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	78, 298
PflFI	GACNNNGTC	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	3 cut(s)	42, 228, 265
PspGI	CCWGG	3 cut(s)	42, 228, 265
PspN4I	GGNNCC	2 cut(s)	59, 114
PspPI	GGNCC	2 cut(s)	113, 323
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	321
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	1 cut(s)	140
Sau96I	GGNCC	2 cut(s)	113, 323
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	44, 230, 267
SetI	ASST	8 cut(s)	48, 93, 141, 181, 216, 283, 294, 341
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	113, 323
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	2 cut(s)	61, 321
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	42, 228, 265
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	78, 298
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	113, 323
XagI	CCTNNNNNAGG	1 cut(s)	306
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	2 cut(s)	238, 256
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.