Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Reverse (-)

13018651 .. 13019988

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGCCGCGTCCGTACAAAGACTGTGAAGAAATCCTCGCGCCAAGTGATTGAGCGATACTACTCGCGCATGACCCTGGACTTCCACATCAACAAGAAGATCCTGGAGGAGGTGGCCATCATCCCCTCCAAGAGGCTCCGCAACAAGATTGCCGGGTTCTCGACCCATTTGATGAAGCGGATCCAGAAGGGCCCTGTTCGCGGCATCTCCTTGAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTACGTCCCCGAGAAGTCCGCCATCAAGACTGACGAGATCGAGGTCGACAAGGAGACGATCGACATGCTCTCTGCTCTCGGCATGGGCGATATGCCCGGCCTCAAGCGGGTCGACCCGGCTTCTCTTCAGCCCCAGCAGCTCGGGTTCGGGCGCGGCGGGCCCAGGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

141

Amino Acids

16.16

Weight (kDa)

10.17

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	294, 360
AccII	CGCG	6 cut(s)	9, 40, 67, 201, 234, 402
AciI	CCGC	9 cut(s)	7, 139, 178, 201, 241, 267, 355, 402, 405
AclWI	GGATC	3 cut(s)	94, 175, 188
AcoI	YGGCCR	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	2 cut(s)	16, 419
AfiI	CCNNNNNNNGG	5 cut(s)	109, 132, 200, 226, 355
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	4 cut(s)	75, 102, 219, 410
AluBI	AGCT	2 cut(s)	217, 388
AluI	AGCT	2 cut(s)	217, 388
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	94, 175, 188
Ama87I	CYCGRG	2 cut(s)	257, 389
AoxI	GGCC	5 cut(s)	4, 114, 190, 346, 407
ApaI	GGGCCC	2 cut(s)	194, 411
ApeKI	GCWGC	1 cut(s)	385
AspLEI	GCGC	5 cut(s)	42, 69, 234, 240, 402
AspS9I	GGNCC	5 cut(s)	4, 190, 191, 407, 408
AsuC2I	CCSGG	3 cut(s)	154, 345, 365
AvaI	CYCGRG	2 cut(s)	257, 389
BaeGI	GKGCMC	2 cut(s)	194, 411
BalI	TGGCCA	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	194, 411
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	125, 278
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	4 cut(s)	77, 104, 221, 412
BcnI	CCSGG	3 cut(s)	154, 345, 365
BcoDI	GTCTC	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	5 cut(s)	7, 202, 241, 386, 403
BlsI	GCNGC	5 cut(s)	8, 203, 242, 387, 404
Bme1390I	CCNGG	7 cut(s)	77, 104, 154, 221, 345, 365, 412
BmeT110I	CYCGRG	2 cut(s)	257, 389
BmgT120I	GGNCC	5 cut(s)	4, 190, 191, 407, 408
BmiI	GGNNCC	4 cut(s)	137, 182, 192, 409
BmrFI	CCNGG	7 cut(s)	77, 104, 154, 221, 345, 365, 412
BmsI	GCATC	1 cut(s)	213
BpmI	CTGGAG	2 cut(s)	125, 203
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	154, 345, 365
BsaJI	CCNNGG	2 cut(s)	75, 410
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 132, 200, 226, 355
BseBI	CCWGG	4 cut(s)	77, 104, 221, 412
BseDI	CCNNGG	2 cut(s)	75, 410
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	5 cut(s)	109, 132, 200, 226, 355
BseRI	GAGGAG	3 cut(s)	122, 239, 242
BseSI	GKGCMC	2 cut(s)	194, 411
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	381
Bsh1236I	CGCG	6 cut(s)	9, 40, 67, 201, 234, 402
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	5 cut(s)	6, 116, 192, 348, 409
BsiEI	CGRYCG	1 cut(s)	309
BsiHKCI	CYCGRG	2 cut(s)	257, 389
BsiSI	CCGG	3 cut(s)	153, 345, 365
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	5 cut(s)	109, 132, 200, 226, 355
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	5 cut(s)	6, 116, 192, 348, 409
BsoBI	CYCGRG	2 cut(s)	257, 389
Bsp120I	GGGCCC	2 cut(s)	190, 407
Bsp1286I	GDGCHC	2 cut(s)	194, 411
Bsp143I	GATC	4 cut(s)	99, 180, 285, 306
BspACI	CCGC	9 cut(s)	7, 139, 178, 201, 241, 267, 355, 402, 405
BspANI	GGCC	5 cut(s)	6, 116, 192, 348, 409
BspFNI	CGCG	6 cut(s)	9, 40, 67, 201, 234, 402
BspLI	GGNNCC	4 cut(s)	137, 182, 192, 409
BspPI	GGATC	3 cut(s)	94, 175, 188
BssECI	CCNNGG	2 cut(s)	75, 410
BssMI	GATC	4 cut(s)	99, 180, 285, 306
Bst2UI	CCWGG	4 cut(s)	77, 104, 221, 412
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	236, 407
BstENI	CCTNNNNNAGG	2 cut(s)	107, 130
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	6 cut(s)	9, 40, 67, 201, 234, 402
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	5 cut(s)	42, 69, 234, 240, 402
BstKTI	GATC	4 cut(s)	102, 183, 288, 309
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	99, 180, 285, 306
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 240, 385, 406
BstNI	CCWGG	4 cut(s)	77, 104, 221, 412
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	7 cut(s)	75, 102, 152, 219, 343, 363, 410
BstSLI	GKGCMC	2 cut(s)	194, 411
BstUI	CGCG	6 cut(s)	9, 40, 67, 201, 234, 402
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	99, 180
BstYI	RGATCY	2 cut(s)	99, 180
BsuRI	GGCC	5 cut(s)	6, 116, 192, 348, 409
BtsCI	GGATG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	236, 407
CfoI	GCGC	5 cut(s)	42, 69, 234, 240, 402
Cfr13I	GGNCC	5 cut(s)	4, 190, 191, 407, 408
Csp6I	GTAC	2 cut(s)	15, 418
CviAII	CATG	4 cut(s)	70, 244, 313, 331
CviQI	GTAC	2 cut(s)	15, 418
DpnI	GATC	4 cut(s)	101, 182, 287, 308
DpnII	GATC	4 cut(s)	99, 180, 285, 306
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	256
Eco24I	GRGCYC	2 cut(s)	194, 411
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	2 cut(s)	257, 389
EcoNI	CCTNNNNNAGG	2 cut(s)	107, 130
EcoO109I	RGGNCCY	2 cut(s)	190, 191
EcoRII	CCWGG	4 cut(s)	75, 102, 219, 410
EcoT38I	GRGCYC	2 cut(s)	194, 411
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	4 cut(s)	73, 247, 316, 334
FaiI	YATR	5 cut(s)	71, 245, 314, 332, 341
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	69, 243, 312, 330
FauI	CCCGC	2 cut(s)	348, 398
FblI	GTMKAC	2 cut(s)	294, 360
Fnu4HI	GCNGC	5 cut(s)	7, 202, 241, 386, 403
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	2 cut(s)	194, 411
Fsp4HI	GCNGC	5 cut(s)	7, 202, 241, 386, 403
GlaI	GCGC	5 cut(s)	41, 68, 233, 239, 401
GluI	GCNGC	5 cut(s)	7, 202, 241, 386, 403
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	2 cut(s)	125, 203
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	5 cut(s)	6, 116, 192, 348, 409
HapII	CCGG	3 cut(s)	153, 345, 365
HhaI	GCGC	5 cut(s)	42, 69, 234, 240, 402
Hin1II	CATG	4 cut(s)	73, 247, 316, 334
Hin6I	GCGC	5 cut(s)	40, 67, 232, 238, 400
HinP1I	GCGC	5 cut(s)	40, 67, 232, 238, 400
HincII	GTYRAC	2 cut(s)	295, 361
HindII	GTYRAC	2 cut(s)	295, 361
HpaII	CCGG	3 cut(s)	153, 345, 365
Hpy166II	GTNNAC	2 cut(s)	295, 361
Hpy188III	TCNNGA	3 cut(s)	160, 184, 274
Hpy8I	GTNNAC	2 cut(s)	295, 361
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 240, 385, 406
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	73, 247, 316, 334
HspAI	GCGC	5 cut(s)	40, 67, 232, 238, 400
Kzo9I	GATC	4 cut(s)	99, 180, 285, 306
LmnI	GCTCC	3 cut(s)	141, 222, 229
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	252
MalI	GATC	4 cut(s)	101, 182, 287, 308
MboI	GATC	4 cut(s)	99, 180, 285, 306
MboII	GAAGA	3 cut(s)	40, 109, 365
MflI	RGATCY	2 cut(s)	99, 180
MhlI	GDGCHC	2 cut(s)	194, 411
MlsI	TGGCCA	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	116
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	3 cut(s)	153, 345, 365
MspR9I	CCNGG	7 cut(s)	77, 104, 154, 221, 345, 365, 412
MvaI	CCWGG	4 cut(s)	77, 104, 221, 412
MvnI	CGCG	6 cut(s)	9, 40, 67, 201, 234, 402
MwoI	GCNNNNNNNGC	4 cut(s)	198, 240, 385, 406
NciI	CCSGG	3 cut(s)	154, 345, 365
NdeII	GATC	4 cut(s)	99, 180, 285, 306
NlaIII	CATG	4 cut(s)	73, 247, 316, 334
NlaIV	GGNNCC	4 cut(s)	137, 182, 192, 409
NmeAIII	GCCGAG	1 cut(s)	306
NspI	RCATGY	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	2 cut(s)	102, 219
PkrI	GCNGC	5 cut(s)	8, 203, 242, 387, 404
Ple19I	CGATCG	1 cut(s)	309
Psp6I	CCWGG	4 cut(s)	75, 102, 219, 410
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	4 cut(s)	75, 102, 219, 410
PspN4I	GGNNCC	4 cut(s)	137, 182, 192, 409
PspOMI	GGGCCC	2 cut(s)	190, 407
PspPI	GGNCC	5 cut(s)	4, 190, 191, 407, 408
PsuI	RGATCY	2 cut(s)	99, 180
PsyI	GACNNNGTC	1 cut(s)	251
PvuI	CGATCG	1 cut(s)	309
RsaI	GTAC	2 cut(s)	16, 419
RsaNI	GTAC	2 cut(s)	15, 418
SalI	GTCGAC	2 cut(s)	293, 359
SatI	GCNGC	5 cut(s)	7, 202, 241, 386, 403
Sau3AI	GATC	4 cut(s)	99, 180, 285, 306
Sau96I	GGNCC	5 cut(s)	4, 190, 191, 407, 408
ScrFI	CCNGG	7 cut(s)	77, 104, 154, 221, 345, 365, 412
SduI	GDGCHC	2 cut(s)	194, 411
SetI	ASST	6 cut(s)	114, 219, 255, 294, 390, 419
SfaNI	GCATC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SsiI	CCGC	9 cut(s)	7, 139, 178, 201, 241, 267, 355, 402, 405
StyD4I	CCNGG	7 cut(s)	75, 102, 152, 219, 343, 363, 410
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	161, 288, 294, 309, 360
TauI	GCSGC	4 cut(s)	9, 204, 243, 405
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	188
Tth111I	GACNNNGTC	1 cut(s)	251
XagI	CCTNNNNNAGG	2 cut(s)	107, 130
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	2 cut(s)	294, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.