Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Forward (+)

20834566 .. 20836331

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG222100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGACGCGTCCGCACGAAGACCGTGAAGAAGTCCTCCCGGCAGGTGATCGAGCGGTACTACTCGCGCATGACGCTCGACTTCCACACCAACAAGAAGGTCCTGGAGGAAGTGGCCATCATCCCGTCGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGAGTCCGCCATCAAGACCGACGAGATCGCCGTCGACAAGGAGACCCTCGACATGCTCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCCGTCGGGTTCGGCCGCGGCGGCCCCAGGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

140

Amino Acids

15.96

Weight (kDa)

10.03

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 121	1.1e-59	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	5 cut(s)	9, 67, 201, 234, 402
AclWI	GGATC	2 cut(s)	356, 369
AcoI	YGGCCR	2 cut(s)	114, 397
AfaI	GTAC	2 cut(s)	59, 419
AfiI	CCNNNNNNNGG	2 cut(s)	200, 226
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	3 cut(s)	102, 219, 410
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	356, 369
AoxI	GGCC	4 cut(s)	114, 190, 397, 406
ApaI	GGGCCC	1 cut(s)	194
AspLEI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
AspS9I	GGNCC	4 cut(s)	100, 190, 191, 407
AsuC2I	CCSGG	2 cut(s)	40, 345
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	26
BccI	CCATC	3 cut(s)	125, 174, 278
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	6 cut(s)	58, 92, 130, 164, 232, 266
BciT130I	CCWGG	3 cut(s)	104, 221, 412
BcnI	CCSGG	2 cut(s)	40, 345
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	421
BfoI	RGCGCY	2 cut(s)	136, 241
BfuAI	ACCTGC	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
BlsI	GCNGC	5 cut(s)	203, 242, 401, 404, 407
Bme1390I	CCNGG	5 cut(s)	40, 104, 221, 345, 412
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	4 cut(s)	100, 190, 191, 407
BmiI	GGNNCC	4 cut(s)	192, 193, 363, 409
BmrFI	CCNGG	5 cut(s)	40, 104, 221, 345, 412
BmsI	GCATC	2 cut(s)	189, 213
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	3 cut(s)	125, 203, 359
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	40, 345
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	199, 400, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 226
BseBI	CCWGG	3 cut(s)	104, 221, 412
BseDI	CCNNGG	3 cut(s)	199, 400, 410
BseGI	GGATG	2 cut(s)	120, 180
BseLI	CCNNNNNNNGG	2 cut(s)	200, 226
BseRI	GAGGAG	2 cut(s)	239, 242
BseSI	GKGCMC	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	397
Bsh1236I	CGCG	5 cut(s)	9, 67, 201, 234, 402
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	4 cut(s)	116, 192, 399, 408
BsiEI	CGRYCG	1 cut(s)	400
BsiSI	CCGG	3 cut(s)	40, 153, 345
BslFI	GGGAC	2 cut(s)	18, 239
BslI	CCNNNNNNNGG	2 cut(s)	200, 226
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	18, 239
BsnI	GGCC	4 cut(s)	116, 192, 399, 408
Bso31I	GGTCTC	1 cut(s)	296
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	48, 147, 285, 361, 370
BspANI	GGCC	4 cut(s)	116, 192, 399, 408
BspFNI	CGCG	5 cut(s)	9, 67, 201, 234, 402
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	192, 193, 363, 409
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	356, 369
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	199, 400, 410
BssMI	GATC	5 cut(s)	48, 147, 285, 361, 370
Bst2UI	CCWGG	3 cut(s)	104, 221, 412
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	236
BstDSI	CCRYGG	2 cut(s)	199, 400
BstF5I	GGATG	2 cut(s)	120, 180
BstFNI	CGCG	5 cut(s)	9, 67, 201, 234, 402
BstH2I	RGCGCY	2 cut(s)	136, 241
BstHHI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
BstKTI	GATC	5 cut(s)	51, 150, 288, 364, 373
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	48, 147, 285, 361, 370
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 198, 240, 405
BstNI	CCWGG	3 cut(s)	104, 221, 412
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	5 cut(s)	38, 102, 219, 343, 410
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	5 cut(s)	9, 67, 201, 234, 402
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	116, 192, 399, 408
BtgI	CCRYGG	2 cut(s)	199, 400
BtsCI	GGATG	2 cut(s)	120, 180
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
Cfr13I	GGNCC	4 cut(s)	100, 190, 191, 407
Cfr42I	CCGCGG	2 cut(s)	202, 403
CseI	GACGC	2 cut(s)	15, 82
Csp6I	GTAC	2 cut(s)	58, 418
CviAII	CATG	5 cut(s)	70, 172, 244, 313, 331
CviJI	RGCY	5 cut(s)	116, 192, 217, 399, 408
CviKI_1	RGCY	5 cut(s)	116, 192, 217, 399, 408
CviQI	GTAC	2 cut(s)	58, 418
DpnI	GATC	5 cut(s)	50, 149, 287, 363, 372
DpnII	GATC	5 cut(s)	48, 147, 285, 361, 370
EaeI	YGGCCR	2 cut(s)	114, 397
EagI	CGGCCG	1 cut(s)	397
EciI	GGCGGA	2 cut(s)	256, 350
EclXI	CGGCCG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	397
EcoO109I	RGGNCCY	3 cut(s)	100, 190, 191
EcoRII	CCWGG	3 cut(s)	102, 219, 410
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	5 cut(s)	73, 175, 247, 316, 334
FaiI	YATR	5 cut(s)	71, 173, 245, 314, 332
FaqI	GGGAC	2 cut(s)	18, 239
FatI	CATG	5 cut(s)	69, 171, 243, 312, 330
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
FokI	GGATG	2 cut(s)	107, 167
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
FspBI	CTAG	1 cut(s)	421
GlaI	GCGC	6 cut(s)	68, 134, 179, 233, 239, 384
GluI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
GsuI	CTGGAG	3 cut(s)	125, 203, 359
HaeII	RGCGCY	2 cut(s)	136, 241
HaeIII	GGCC	4 cut(s)	116, 192, 399, 408
HapII	CCGG	3 cut(s)	40, 153, 345
HgaI	GACGC	2 cut(s)	15, 82
HhaI	GCGC	6 cut(s)	69, 135, 180, 234, 240, 385
Hin1II	CATG	5 cut(s)	73, 175, 247, 316, 334
Hin6I	GCGC	6 cut(s)	67, 133, 178, 232, 238, 383
HinP1I	GCGC	6 cut(s)	67, 133, 178, 232, 238, 383
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	156, 263, 348
HpaII	CCGG	3 cut(s)	40, 153, 345
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	6 cut(s)	160, 172, 184, 274, 352, 376
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	5 cut(s)	130, 263, 284, 296, 392
HpyAV	CCTTC	3 cut(s)	91, 181, 349
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 198, 240, 405
Hsp92II	CATG	5 cut(s)	73, 175, 247, 316, 334
HspAI	GCGC	6 cut(s)	67, 133, 178, 232, 238, 383
KspI	CCGCGG	2 cut(s)	202, 403
Kzo9I	GATC	5 cut(s)	48, 147, 285, 361, 370
LmnI	GCTCC	2 cut(s)	222, 229
LweI	GCATC	2 cut(s)	189, 213
MaeI	CTAG	1 cut(s)	421
MalI	GATC	5 cut(s)	50, 149, 287, 363, 372
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	48, 147, 285, 361, 370
MboII	GAAGA	2 cut(s)	31, 40
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	194
MlsI	TGGCCA	1 cut(s)	116
MluI	ACGCGT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	272, 357
MnlI	CCTC	9 cut(s)	46, 100, 146, 217, 220, 221, 317, 376, 408
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	201, 402
MspI	CCGG	3 cut(s)	40, 153, 345
MspR9I	CCNGG	5 cut(s)	40, 104, 221, 345, 412
MvaI	CCWGG	3 cut(s)	104, 221, 412
MvnI	CGCG	5 cut(s)	9, 67, 201, 234, 402
MwoI	GCNNNNNNNGC	4 cut(s)	73, 198, 240, 405
NciI	CCSGG	2 cut(s)	40, 345
NdeII	GATC	5 cut(s)	48, 147, 285, 361, 370
NlaIII	CATG	5 cut(s)	73, 175, 247, 316, 334
NlaIV	GGNNCC	4 cut(s)	192, 193, 363, 409
NmeAIII	GCCGAG	1 cut(s)	306
NspI	RCATGY	1 cut(s)	316
PagI	TCATGA	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 288
PfeI	GAWTC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	3 cut(s)	102, 219, 343
PkrI	GCNGC	5 cut(s)	203, 242, 401, 404, 407
PleI	GAGTC	2 cut(s)	271, 356
PpsI	GAGTC	2 cut(s)	271, 356
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	102, 219, 410
PspGI	CCWGG	3 cut(s)	102, 219, 410
PspN4I	GGNNCC	4 cut(s)	192, 193, 363, 409
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	4 cut(s)	100, 190, 191, 407
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	59, 419
RsaNI	GTAC	2 cut(s)	58, 418
SacII	CCGCGG	2 cut(s)	202, 403
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	5 cut(s)	202, 241, 400, 403, 406
Sau3AI	GATC	5 cut(s)	48, 147, 285, 361, 370
Sau96I	GGNCC	4 cut(s)	100, 190, 191, 407
SchI	GAGTC	2 cut(s)	272, 357
ScrFI	CCNGG	5 cut(s)	40, 104, 221, 345, 412
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	5 cut(s)	48, 102, 219, 360, 419
SfaNI	GCATC	2 cut(s)	189, 213
SfiI	GGCCNNNNNGGCC	1 cut(s)	405
Sfr303I	CCGCGG	2 cut(s)	202, 403
SgrBI	CCGCGG	2 cut(s)	202, 403
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SspMI	CTAG	1 cut(s)	421
StyD4I	CCNGG	5 cut(s)	38, 102, 219, 343, 410
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	6 cut(s)	51, 78, 128, 161, 294, 309
TaqII	GACCGA	1 cut(s)	293
TauI	GCSGC	5 cut(s)	204, 243, 402, 405, 408
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.