Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Forward (+)

3595621 .. 3596204

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1032900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGTCGCGTCCGCACAAAAACAGTGAAGAAATCCTCCCGCCAGGTGATCGAGCGCTACTACTCGCGCATGACCCTGGACTTCCACACCAACAAGAAGATCCTCGAGGAAGTCGCCATCATCCCCTCCAAGCGCCTCCGCAACAAGATTGCCGGATTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGCCCGGTCCGCGGCATCTCCCTGAAGCTGCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCTGAGGAGTCCGCTATCAAGATCGACGAGATCTCCGTCGACAAGGAAACCATCGACATGCTCTCTGCTCTGGGCATGGCTGACATGCCCGGCGTCAAGCGGGTCGACCCGGAAGCACAGTCTCAGAATCTGGGGTTCGTGCGTGGTGGACCCAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

139

Amino Acids

15.81

Weight (kDa)

10.04

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 120	1.3e-59	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	104
AccI	GTMKAC	2 cut(s)	294, 360
AccII	CGCG	4 cut(s)	9, 67, 201, 234
AciI	CCGC	9 cut(s)	13, 40, 139, 178, 199, 201, 241, 267, 355
AclWI	GGATC	3 cut(s)	94, 175, 188
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	348
AfeI	AGCGCT	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	42, 75
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	94, 175, 188
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	104
Aor51HI	AGCGCT	1 cut(s)	56
AoxI	GGCC	1 cut(s)	190
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	217
AspLEI	GCGC	5 cut(s)	57, 69, 135, 234, 240
AspS9I	GGNCC	4 cut(s)	190, 191, 196, 404
AsuC2I	CCSGG	3 cut(s)	194, 345, 365
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	196, 404
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	2 cut(s)	125, 314
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	2 cut(s)	44, 77
BcnI	CCSGG	3 cut(s)	194, 345, 365
BcoDI	GTCTC	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	3 cut(s)	58, 136, 241
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	3 cut(s)	202, 218, 241
BlsI	GCNGC	3 cut(s)	203, 219, 242
Bme1390I	CCNGG	5 cut(s)	44, 77, 194, 345, 365
Bme18I	GGWCC	2 cut(s)	196, 404
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	190, 191, 196, 404
BmiI	GGNNCC	3 cut(s)	182, 192, 406
BmrFI	CCNGG	5 cut(s)	44, 77, 194, 345, 365
BmsI	GCATC	1 cut(s)	213
BpuMI	CCSGG	3 cut(s)	194, 345, 365
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	75, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	44, 77
BseDI	CCNNGG	2 cut(s)	75, 199
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	249, 392
BseRI	GAGGAG	3 cut(s)	239, 242, 275
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	204
Bsh1236I	CGCG	4 cut(s)	9, 67, 201, 234
BshFI	GGCC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	153, 194, 345, 365
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	48, 99, 180, 276, 285
BspACI	CCGC	9 cut(s)	13, 40, 139, 178, 199, 201, 241, 267, 355
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	250, 391
BspFNI	CGCG	4 cut(s)	9, 67, 201, 234
BspLI	GGNNCC	3 cut(s)	182, 192, 406
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	3 cut(s)	94, 175, 188
BssECI	CCNNGG	2 cut(s)	75, 199
BssMI	GATC	5 cut(s)	48, 99, 180, 276, 285
BssNI	GRCGYC	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	44, 77
Bst4CI	ACNGT	2 cut(s)	25, 375
BstACI	GRCGYC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	258, 378
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	4 cut(s)	9, 67, 201, 234
BstH2I	RGCGCY	3 cut(s)	58, 136, 241
BstHHI	GCGC	5 cut(s)	57, 69, 135, 234, 240
BstKTI	GATC	5 cut(s)	51, 102, 183, 279, 288
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	5 cut(s)	48, 99, 180, 276, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 240
BstNI	CCWGG	2 cut(s)	44, 77
BstNSI	RCATGY	2 cut(s)	316, 343
BstSCI	CCNGG	5 cut(s)	42, 75, 192, 343, 363
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	4 cut(s)	9, 67, 201, 234
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	99, 180, 285
BstYI	RGATCY	3 cut(s)	99, 180, 285
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	5 cut(s)	57, 69, 135, 234, 240
Cfr13I	GGNCC	4 cut(s)	190, 191, 196, 404
Cfr42I	CCGCGG	1 cut(s)	202
CpoI	CGGWCCG	1 cut(s)	196
CseI	GACGC	1 cut(s)	337
CspI	CGGWCCG	1 cut(s)	196
CviAII	CATG	5 cut(s)	70, 244, 313, 331, 340
CviJI	RGCY	3 cut(s)	192, 217, 335
CviKI_1	RGCY	3 cut(s)	192, 217, 335
DdeI	CTNAG	2 cut(s)	258, 378
DpnI	GATC	5 cut(s)	50, 101, 182, 278, 287
DpnII	GATC	5 cut(s)	48, 99, 180, 276, 285
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	196, 404
Eco47III	AGCGCT	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	42, 75
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	5 cut(s)	73, 247, 316, 334, 343
FaiI	YATR	5 cut(s)	71, 245, 314, 332, 341
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	5 cut(s)	69, 243, 312, 330, 339
FauI	CCCGC	2 cut(s)	47, 348
FblI	GTMKAC	2 cut(s)	294, 360
Fnu4HI	GCNGC	3 cut(s)	202, 218, 241
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	3 cut(s)	202, 218, 241
GlaI	GCGC	5 cut(s)	56, 68, 134, 233, 239
GluI	GCNGC	3 cut(s)	202, 218, 241
HaeII	RGCGCY	3 cut(s)	58, 136, 241
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	4 cut(s)	153, 194, 345, 365
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	5 cut(s)	57, 69, 135, 234, 240
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	73, 247, 316, 334, 343
Hin6I	GCGC	5 cut(s)	55, 67, 133, 232, 238
HinP1I	GCGC	5 cut(s)	55, 67, 133, 232, 238
HincII	GTYRAC	2 cut(s)	295, 361
HindII	GTYRAC	2 cut(s)	295, 361
HinfI	GANTC	3 cut(s)	156, 263, 382
HpaII	CCGG	4 cut(s)	153, 194, 345, 365
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	295, 361, 404
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	2 cut(s)	184, 274
Hpy8I	GTNNAC	3 cut(s)	295, 361, 404
Hpy99I	CGWCG	2 cut(s)	284, 296
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	25, 375
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 240
HpyF3I	CTNAG	2 cut(s)	258, 378
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	5 cut(s)	73, 247, 316, 334, 343
HspAI	GCGC	5 cut(s)	55, 67, 133, 232, 238
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	48, 99, 180, 276, 285
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	1 cut(s)	213
MalI	GATC	5 cut(s)	50, 101, 182, 278, 287
MboI	GATC	5 cut(s)	48, 99, 180, 276, 285
MboII	GAAGA	2 cut(s)	40, 109
MflI	RGATCY	3 cut(s)	99, 180, 285
MhlI	GDGCHC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	8 cut(s)	46, 100, 113, 136, 146, 217, 220, 253
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	4 cut(s)	153, 194, 345, 365
MspR9I	CCNGG	5 cut(s)	44, 77, 194, 345, 365
MvaI	CCWGG	2 cut(s)	44, 77
MvnI	CGCG	4 cut(s)	9, 67, 201, 234
MwoI	GCNNNNNNNGC	2 cut(s)	198, 240
NciI	CCSGG	3 cut(s)	194, 345, 365
NdeII	GATC	5 cut(s)	48, 99, 180, 276, 285
NlaIII	CATG	5 cut(s)	73, 247, 316, 334, 343
NlaIV	GGNNCC	3 cut(s)	182, 192, 406
NspI	RCATGY	2 cut(s)	316, 343
PaeR7I	CTCGAG	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	156, 382
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	203, 219, 242
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	42, 75
PspGI	CCWGG	2 cut(s)	42, 75
PspN4I	GGNNCC	3 cut(s)	182, 192, 406
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	4 cut(s)	190, 191, 196, 404
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	3 cut(s)	99, 180, 285
PsyI	GACNNNGTC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	311
Rsr2I	CGGWCCG	1 cut(s)	196
RsrII	CGGWCCG	1 cut(s)	196
SacII	CCGCGG	1 cut(s)	202
SalI	GTCGAC	2 cut(s)	293, 359
SatI	GCNGC	3 cut(s)	202, 218, 241
Sau3AI	GATC	5 cut(s)	48, 99, 180, 276, 285
Sau96I	GGNCC	4 cut(s)	190, 191, 196, 404
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	5 cut(s)	44, 77, 194, 345, 365
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	3 cut(s)	48, 171, 219
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	218
Sfr274I	CTCGAG	1 cut(s)	104
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	196, 404
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SsiI	CCGC	9 cut(s)	13, 40, 139, 178, 199, 201, 241, 267, 355
StyD4I	CCNGG	5 cut(s)	42, 75, 192, 343, 363
TaaI	ACNGT	2 cut(s)	25, 375
TaqI	TCGA	6 cut(s)	51, 105, 279, 294, 309, 360
TauI	GCSGC	2 cut(s)	204, 243
TfiI	GAWTC	2 cut(s)	156, 382
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	196, 404
XceI	RCATGY	2 cut(s)	316, 343
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	2 cut(s)	294, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.