Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003323

Physical Location & Seq

Genomic Coordinates Forward (+)

1387909 .. 1389887

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGCGTGTTAGAACCAAGACTGTGAAGAAATCTTCTCGTCAAGTCATCGAGAAGTACTACTCTCGCATGACTCTTGACTTCCACACTAACAAGAAAATCCTTGAAGAGGTTGCCATCATCCCTTCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACTTGATGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAGGAAGAGGAGCGTGAACGCCGCATGGACTTTGTTCCCGATGAGTCTGCCATCAAGACTGATGAGATCAAGGTGGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACTCCCGGCATCTCTGCAGTCGAGCCACAACAAGCTATGGCACCAATCGCTGCTTTCGGTGGTGGCAGGGCACCCAGAAGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

141

Amino Acids

16.02

Weight (kDa)

10.04

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 120	8.7e-60	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05220 AT2G05220 AT3G10610 AT5G04800 AT5G04800 AT5G04800 AT5G04800
fragaria_vesca	FvH4_2g13900 FvH4_6g19760
malus_domestica	MD08G1190300.v1.1 MD12G1032900.v1.1 MD14G1033700.v1.1
prunus_persica	Prupe.2G071300_v2.0.a1 Prupe.2G071300_v2.0.a1 Prupe.7G099300_v2.0.a1
pyrus_communis	pycom08g16350
rosa_chinensis	RchiOBHm_Chr3g0475121 RchiOBHm_Chr3g0492591
rosa_laevigata	RLG00000022756 RLG00000023862
rosa_multiflora	Rmu_sc0000831.1_g000043 Rmu_sc0003093.1_g000025 Rmu_sc0007491.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392180 Rroxscaffold_6G00406550
rosa_rugosa	Rorug03G0146800 Rorug03G0254900 Rorug03G0255000
rosa_samantha	Rh3AG196600 Rh3AG305200 Rh3BG226600 Rh3BG341400 Rh3DG222100 Rh3DG340800
rosa_wichuraiana	Rw3G017890 Rw3G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	379, 409
AccB7I	CCANNNNNTGG	1 cut(s)	200
AciI	CCGC	2 cut(s)	139, 241
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	109, 200
AgsI	TTSAA	2 cut(s)	107, 129
AluBI	AGCT	2 cut(s)	217, 374
AluI	AGCT	2 cut(s)	217, 374
Alw26I	GTCTC	2 cut(s)	127, 296
ApeKI	GCWGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	412
BanI	GGYRCC	2 cut(s)	379, 409
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	2 cut(s)	125, 278
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	127, 296
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	241, 390
BlsI	GCNGC	2 cut(s)	242, 391
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	3 cut(s)	192, 381, 411
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	2 cut(s)	303, 357
BpuEI	CTTGAG	2 cut(s)	197, 329
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 200
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	109, 200
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	376
BshNI	GGYRCC	2 cut(s)	379, 409
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	109, 200
BsmAI	GTCTC	2 cut(s)	127, 296
BsmFI	GGGAC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	139, 241
BspLI	GGNNCC	3 cut(s)	192, 381, 411
BspMAI	CTGCAG	1 cut(s)	358
BspT107I	GGYRCC	2 cut(s)	379, 409
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	2 cut(s)	102, 219
BstC8I	GCNNGC	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	2 cut(s)	127, 296
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	2 cut(s)	70, 244
CviJI	RGCY	3 cut(s)	217, 364, 374
CviKI_1	RGCY	3 cut(s)	217, 364, 374
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	102, 219
EarI	CTCTTC	2 cut(s)	102, 219
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	73, 247
FaiI	YATR	3 cut(s)	71, 245, 377
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	69, 243
Fnu4HI	GCNGC	2 cut(s)	241, 390
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	241, 390
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	2 cut(s)	241, 390
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	2 cut(s)	73, 247
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	6 cut(s)	73, 135, 156, 204, 263, 304
HpaII	CCGG	1 cut(s)	345
Hpy166II	GTNNAC	2 cut(s)	236, 295
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	7 cut(s)	52, 77, 184, 221, 257, 274, 308
Hpy8I	GTNNAC	2 cut(s)	236, 295
HpyAV	CCTTC	2 cut(s)	135, 181
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	73, 247
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	138, 197, 206, 207, 358, 391
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	303, 357
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	178
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	4 cut(s)	27, 40, 119, 236
MhlI	GDGCHC	1 cut(s)	412
MlyI	GAGTC	4 cut(s)	67, 129, 272, 298
MnlI	CCTC	2 cut(s)	103, 220
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	2 cut(s)	73, 247
NlaIV	GGNNCC	3 cut(s)	192, 381, 411
PfeI	GAWTC	2 cut(s)	156, 204
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	242, 391
PleI	GAGTC	4 cut(s)	67, 129, 271, 298
PpsI	GAGTC	4 cut(s)	67, 129, 271, 298
PspN4I	GGNNCC	3 cut(s)	192, 381, 411
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SatI	GCNGC	2 cut(s)	241, 390
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	191
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	4 cut(s)	67, 129, 272, 298
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	5 cut(s)	114, 181, 219, 294, 376
SfaNI	GCATC	2 cut(s)	303, 357
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	212, 308
SmoI	CTYRAG	2 cut(s)	212, 308
SsiI	CCGC	2 cut(s)	139, 241
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	51, 360
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	156, 204
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	326
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.