AT3G11710

lysine--tRNA

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3702048 .. 3705716
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11710.1

Sequence Viewer

Length: 1881 bp
ATGGAAGGTGCGGCTGATCAAACTACGAAAGCGTTATCTGAATTAGCCATGGATTCTTCTACCACCTTGAATGCTGCTGAGTCTAGCGCTGGTGATGGAGCTGGACCTCGGAGTAAAAATGCTTTGAAGAAGGAACAGAAAATGAAGCAGAAAGAGGAAGAGAAGAGACGAAAGGACGAAGAGAAAGCTGAAAAGGCTAAACAAGCACCTAAAGCAAGCTCCCAGAAGGCAGTGGCAGCAGATGATGAAGAGATGGATGCAACGCAATACTATGAGAACAGATTGAAATATCTTGCGGCTGAGAAGGCTAAAGGGGAGAATCCATATCCTCACAAGTTCGCTGTGTCAATGTCGATTCCTAAATACATTGAGACGTATGGTAGTTTGAACAATGGAGATCATGTTGAAAACGCTGAGGAGTCTTTAGCTGGGCGGATAATGAGCAAGCGATCTTCCTCTTCCAAGCTCTTCTTCTATGATCTACACGGTGATGATTTCAAGGTCCAAGTCATGGCTGATGCAAGTAAGTCAGGATTGGATGAAGCTGAGTTCTTAAAGCTCCATTCGAATGCTAAGCGTGGTGATATTGTTGGAGTCATTGGGTTTCCAGGAAAAACTAAGAGGGGAGAATTGAGTATCTTTCCCCGATCATTTATTCTTCTGTCCCATTGCCTCCACATGATGCCGAGAAAGGCTGATAATGTTAATGCAAAGAAACCTGAAATCTGGGTTCCAGGTCAAACGAGAAATCCTGAAGCATATGTTCTGAAAGACCAGGAATCAAGATATCGTCAGCGTCATCTTGATATGATTTTGAACGTGGAGGTTCGTCAGATATTCAGGACTAGAGCTAAAATCATCTCCTATGTCCGCAGATTCCTCGACAACAAAAATTTCTTGGAGGTCGAGACACCTATGATGAACATGATTGCTGGTGGAGCAGCTGCTAGACCTTTTGTGACACATCACAATGATCTAGATATGAGGCTGTACATGCGAATCGCACCTGAACTCTATCTCAAGCAACTTATTGTTGGTGGCTTGGAACGTGTTTACGAGATAGGAAAGCAATTCAGAAACGAGGGTATAGACCTGACCCACAATCCGGAGTTCACCACTTGCGAGTTCTATATGGCTTTTGCAGACTACAATGACCTGATGGAAATGACTGAGGTTATGTTGAGTGGCATGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGGAGGATTGAGATGATAGGAGAGTTAGAGAAGGTTGCTAAGCTCAATATACCAAAAGACTTGGCTAGCGAAGAAGCTAACAAGTATCTGATTGATGCATGTGCGAGGTTTGATGTCAAATGCCCTCCTCCTCAGACAACAGCTCGTCTGTTAGATAAACTTGTTGGAGAATTTCTGGAACCGACATGTGTGAACCCAACTTTCATCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAAGAGTGGATTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAACTCTGCAATGCCTACACGGAGCTAAACGATCCTGTGGTACAGCGCCAGCGTTTTGCTGATCAGCTCAAGGATCGACAGTCTGGAGACGATGAAGCGATGGCTTTAGATGAAACATTTTGTAATGCTTTAGAATATGGGTTGGCTCCTACAGGTGGCTGGGGATTAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAGGAGGTTCTTTTCTTCCCGGCAATGAGGCCACCACAGGAGGAGTCAGCAGCCGCTCAAGCTCCTTTAACAGAAGAGAAGAAATAA

Protein Analysis

626

Amino Acids

70.89

Weight (kDa)

5.9

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_anti-codon PF01336 141 - 220 6.9e-10 OB-fold nucleic acid binding domain
tRNA-synt_2 PF00152 258 - 607 2.2e-90 tRNA synthetases class II (D, K and N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1215
AccB7I CCANNNNNTGG 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 1850
AccIII TCCGGA 1 cut(s) 1105
AciI CCGC 5 cut(s) 11, 296, 433, 871, 1848
AclWI GGATC 4 cut(s) 1244, 1257, 1607, 1662
AcsI RAATTY 2 cut(s) 892, 1451
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 992, 1623
AfeI AGCGCT 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 511, 1105, 1736
AflIII ACRYGT 2 cut(s) 1048, 1466
AgsI TTSAA 8 cut(s) 70, 127, 286, 388, 407, 499, 817, 1259
AjnI CCWGG 3 cut(s) 607, 733, 774
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
Alw26I GTCTC 4 cut(s) 160, 365, 902, 1662
AlwI GGATC 4 cut(s) 1244, 1257, 1607, 1662
Ama87I CYCGRG 1 cut(s) 1499
Aor13HI TCCGGA 1 cut(s) 1105
Aor51HI AGCGCT 1 cut(s) 88
AoxI GGCC 1 cut(s) 1823
ApeKI GCWGC 5 cut(s) 74, 236, 941, 944, 1844
ApoI RAATTY 2 cut(s) 892, 1451
AspLEI GCGC 2 cut(s) 89, 1629
AspS9I GGNCC 2 cut(s) 104, 502
AsuC2I CCSGG 1 cut(s) 1814
AsuHPI GGTGA 4 cut(s) 104, 500, 593, 1105
AsuII TTCGAA 1 cut(s) 566
AsuNHI GCTAGC 1 cut(s) 1346
AvaI CYCGRG 1 cut(s) 1499
AvaII GGWCC 2 cut(s) 104, 502
BamHI GGATCC 1 cut(s) 1249
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 5 cut(s) 61, 248, 931, 953, 1856
BccI CCATC 4 cut(s) 89, 247, 1153, 1675
BcgI CGANNNNNNTGC 2 cut(s) 862, 896
BciT130I CCWGG 3 cut(s) 609, 735, 776
BclI TGATCA 2 cut(s) 16, 1642
BcnI CCSGG 1 cut(s) 1814
BcoDI GTCTC 4 cut(s) 160, 365, 902, 1662
BfaI CTAG 5 cut(s) 84, 846, 948, 977, 1347
BfmI CTRYAG 1 cut(s) 1731
BfoI RGCGCY 2 cut(s) 90, 1630
BisI GCNGC 8 cut(s) 12, 75, 237, 297, 942, 945, 1845, 1848
BlpI GCTNAGC 2 cut(s) 573, 1320
BlsI GCNGC 8 cut(s) 13, 76, 238, 298, 943, 946, 1846, 1849
Bme1390I CCNGG 4 cut(s) 609, 735, 776, 1814
Bme18I GGWCC 2 cut(s) 104, 502
BmeT110I CYCGRG 1 cut(s) 1499
BmgT120I GGNCC 2 cut(s) 104, 502
BmiI GGNNCC 4 cut(s) 732, 1251, 1461, 1728
BmrFI CCNGG 4 cut(s) 609, 735, 776, 1814
BmsI GCATC 4 cut(s) 247, 508, 672, 1366
BmtI GCTAGC 1 cut(s) 1350
BpmI CTGGAG 1 cut(s) 1686
Bpu10I CCTNAGC 1 cut(s) 414
Bpu1102I GCTNAGC 2 cut(s) 573, 1320
Bpu14I TTCGAA 1 cut(s) 566
BpuEI CTTGAG 3 cut(s) 1004, 1634, 1836
BpuMI CCSGG 1 cut(s) 1814
BsaJI CCNNGG 2 cut(s) 48, 107
BsaWI WCCGGW 1 cut(s) 1105
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 511, 1105, 1736
Bse3DI GCAATG 3 cut(s) 667, 1597, 1824
BseAI TCCGGA 1 cut(s) 1105
BseBI CCWGG 3 cut(s) 609, 735, 776
BseDI CCNNGG 2 cut(s) 48, 107
BseGI GGATG 2 cut(s) 262, 544
BseLI CCNNNNNNNGG 3 cut(s) 511, 1105, 1736
BseMI GCAATG 3 cut(s) 667, 1597, 1824
BseMII CTCAG 6 cut(s) 69, 291, 405, 537, 1161, 1427
BseRI GAGGAG 4 cut(s) 431, 1398, 1401, 1850
BseXI GCAGC 5 cut(s) 61, 248, 931, 953, 1856
BseYI CCCAGC 2 cut(s) 428, 1740
BshFI GGCC 1 cut(s) 1825
BsiHKCI CYCGRG 1 cut(s) 1499
BsiSI CCGG 2 cut(s) 1106, 1814
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 3 cut(s) 511, 1105, 1736
BsmAI GTCTC 4 cut(s) 160, 365, 902, 1662
BsmBI CGTCTC 3 cut(s) 160, 365, 1662
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 2 cut(s) 76, 574
BsnI GGCC 1 cut(s) 1825
BsoBI CYCGRG 1 cut(s) 1499
Bsp119I TTCGAA 1 cut(s) 566
Bsp13I TCCGGA 1 cut(s) 1105
Bsp1407I TGTACA 1 cut(s) 990
Bsp1720I GCTNAGC 2 cut(s) 573, 1320
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 5 cut(s) 11, 296, 433, 871, 1848
BspANI GGCC 1 cut(s) 1825
BspCNI CTCAG 6 cut(s) 70, 292, 406, 538, 1162, 1426
BspEI TCCGGA 1 cut(s) 1105
BspHI TCATGA 1 cut(s) 1506
BspLI GGNNCC 4 cut(s) 732, 1251, 1461, 1728
BspOI GCTAGC 1 cut(s) 1350
BspPI GGATC 4 cut(s) 1244, 1257, 1607, 1662
BspQI GCTCTTC 1 cut(s) 473
BspT104I TTCGAA 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 1850
BsrDI GCAATG 3 cut(s) 667, 1597, 1824
BsrGI TGTACA 1 cut(s) 990
BssECI CCNNGG 2 cut(s) 48, 107
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 609, 735, 776
Bst4CI ACNGT 2 cut(s) 488, 1662
Bst6I CTCTTC 8 cut(s) 153, 158, 174, 243, 463, 473, 1532, 1863
BstAUI TGTACA 1 cut(s) 990
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 4 cut(s) 217, 446, 1348, 1631
BstDEI CTNAG 9 cut(s) 78, 300, 414, 546, 573, 618, 1170, 1320, 1413
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 262, 544
BstH2I RGCGCY 2 cut(s) 90, 1630
BstHHI GCGC 2 cut(s) 89, 1629
BstMAI GTCTC 4 cut(s) 160, 365, 902, 1662
BstMWI GCNNNNNNNGC 8 cut(s) 194, 203, 212, 236, 305, 938, 994, 1853
BstNI CCWGG 3 cut(s) 609, 735, 776
BstNSI RCATGY 3 cut(s) 997, 1383, 1470
BstSCI CCNGG 4 cut(s) 607, 733, 774, 1812
BstSFI CTRYAG 1 cut(s) 1731
BstV1I GCAGC 5 cut(s) 61, 248, 931, 953, 1856
BstX2I RGATCY 1 cut(s) 1249
BstYI RGATCY 1 cut(s) 1249
BsuRI GGCC 1 cut(s) 1825
BtgI CCRYGG 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 1694
BtsCI GGATG 2 cut(s) 262, 544
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 1784
Cac8I GCNNGC 4 cut(s) 217, 446, 1348, 1631
CciI TCATGA 1 cut(s) 1506
CfoI GCGC 2 cut(s) 89, 1629
Cfr13I GGNCC 2 cut(s) 104, 502
CseI GACGC 1 cut(s) 785
Csp6I GTAC 2 cut(s) 991, 1622
CviQI GTAC 2 cut(s) 991, 1622
DdeI CTNAG 9 cut(s) 78, 300, 414, 546, 573, 618, 1170, 1320, 1413
Eam1104I CTCTTC 8 cut(s) 153, 158, 174, 243, 463, 473, 1532, 1863
EarI CTCTTC 8 cut(s) 153, 158, 174, 243, 463, 473, 1532, 1863
EciI GGCGGA 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 788
Eco47I GGWCC 2 cut(s) 104, 502
Eco47III AGCGCT 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 774
Eco88I CYCGRG 1 cut(s) 1499
EcoRII CCWGG 3 cut(s) 607, 733, 774
EcoRV GATATC 1 cut(s) 788
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 1381
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 3 cut(s) 160, 365, 1662
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 649
FauNDI CATATG 1 cut(s) 760
FbaI TGATCA 2 cut(s) 16, 1642
Fnu4HI GCNGC 8 cut(s) 12, 75, 237, 297, 942, 945, 1845, 1848
FokI GGATG 2 cut(s) 269, 551
Fsp4HI GCNGC 8 cut(s) 12, 75, 237, 297, 942, 945, 1845, 1848
FspBI CTAG 5 cut(s) 84, 846, 948, 977, 1347
GlaI GCGC 2 cut(s) 88, 1628
GluI GCNGC 8 cut(s) 12, 75, 237, 297, 942, 945, 1845, 1848
GsaI CCCAGC 2 cut(s) 432, 1744
GsuI CTGGAG 1 cut(s) 1686
HaeII RGCGCY 2 cut(s) 90, 1630
HaeIII GGCC 1 cut(s) 1825
HapII CCGG 2 cut(s) 1106, 1814
HgaI GACGC 1 cut(s) 785
HhaI GCGC 2 cut(s) 89, 1629
Hin6I GCGC 2 cut(s) 87, 1627
HinP1I GCGC 2 cut(s) 87, 1627
HpaII CCGG 2 cut(s) 1106, 1814
HphI GGTGA 4 cut(s) 104, 500, 593, 1105
Hpy166II GTNNAC 3 cut(s) 1054, 1113, 1474
Hpy188I TCNGA 7 cut(s) 40, 111, 768, 834, 1076, 1371, 1416
Hpy8I GTNNAC 3 cut(s) 1054, 1113, 1474
HpyAV CCTTC 4 cut(s) 124, 220, 298, 1306
HpyCH4III ACNGT 2 cut(s) 488, 1662
HpyCH4IV ACGT 3 cut(s) 374, 819, 1048
HpyCH4V TGCA 6 cut(s) 260, 521, 710, 1142, 1379, 1590
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 203, 212, 236, 305, 938, 994, 1853
HpyF3I CTNAG 9 cut(s) 78, 300, 414, 546, 573, 618, 1170, 1320, 1413
HpySE526I ACGT 3 cut(s) 374, 819, 1048
HspAI GCGC 2 cut(s) 87, 1627
Kpn2I TCCGGA 1 cut(s) 1105
Ksp22I TGATCA 2 cut(s) 16, 1642
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 7 cut(s) 98, 224, 564, 938, 1603, 1732, 1861
Lsp1109I GCAGC 5 cut(s) 61, 248, 931, 953, 1856
LweI GCATC 4 cut(s) 247, 508, 672, 1366
MaeI CTAG 5 cut(s) 84, 846, 948, 977, 1347
MaeII ACGT 3 cut(s) 374, 819, 1048
MaeIII GTNAC 1 cut(s) 958
MbiI CCGCTC 1 cut(s) 1850
MfeI CAATTG 1 cut(s) 1254
MflI RGATCY 1 cut(s) 1249
MluCI AATT 7 cut(s) 41, 629, 892, 1070, 1199, 1254, 1451
MlyI GAGTC 7 cut(s) 89, 428, 603, 1519, 1755, 1775, 1847
MmeI TCCRAC 2 cut(s) 571, 1426
Mph1103I ATGCAT 1 cut(s) 1381
MroI TCCGGA 1 cut(s) 1105
MseI TTAA 5 cut(s) 554, 705, 1194, 1202, 1862
MslI CAYNNNNRTG 3 cut(s) 489, 567, 969
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 2 cut(s) 1106, 1814
MspR9I CCNGG 4 cut(s) 609, 735, 776, 1814
MunI CAATTG 1 cut(s) 1254
Mva1269I GAATGC 2 cut(s) 76, 574
MvaI CCWGG 3 cut(s) 609, 735, 776
MwoI GCNNNNNNNGC 8 cut(s) 194, 203, 212, 236, 305, 938, 994, 1853
NciI CCSGG 1 cut(s) 1814
NcoI CCATGG 1 cut(s) 48
NdeI CATATG 1 cut(s) 760
NheI GCTAGC 1 cut(s) 1346
NlaIV GGNNCC 4 cut(s) 732, 1251, 1461, 1728
NmeAIII GCCGAG 1 cut(s) 711
NmuCI GTSAC 1 cut(s) 958
NsiI ATGCAT 1 cut(s) 1381
NspI RCATGY 3 cut(s) 997, 1383, 1470
NspV TTCGAA 1 cut(s) 566
PagI TCATGA 1 cut(s) 1506
PciI ACATGT 1 cut(s) 1466
PciSI GCTCTTC 1 cut(s) 473
PctI GAATGC 2 cut(s) 76, 574
PfeI GAWTC 7 cut(s) 53, 319, 355, 779, 876, 999, 1557
PflMI CCANNNNNTGG 1 cut(s) 511
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 8 cut(s) 13, 76, 238, 298, 943, 946, 1846, 1849
PleI GAGTC 7 cut(s) 88, 427, 602, 1518, 1755, 1775, 1846
PpsI GAGTC 7 cut(s) 88, 427, 602, 1518, 1755, 1775, 1846
PscI ACATGT 1 cut(s) 1466
PsiI TTATAA 1 cut(s) 1215
Psp6I CCWGG 3 cut(s) 607, 733, 774
PspFI CCCAGC 2 cut(s) 428, 1740
PspGI CCWGG 3 cut(s) 607, 733, 774
PspN4I GGNNCC 4 cut(s) 732, 1251, 1461, 1728
PspPI GGNCC 2 cut(s) 104, 502
PsuI RGATCY 1 cut(s) 1249
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 2 cut(s) 992, 1623
RsaNI GTAC 2 cut(s) 991, 1622
RseI CAYNNNNRTG 3 cut(s) 489, 567, 969
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 5 cut(s) 554, 705, 1194, 1202, 1862
SatI GCNGC 8 cut(s) 12, 75, 237, 297, 942, 945, 1845, 1848
Sau96I GGNCC 2 cut(s) 104, 502
SchI GAGTC 7 cut(s) 89, 428, 603, 1519, 1755, 1775, 1847
ScrFI CCNGG 4 cut(s) 609, 735, 776, 1814
SfaNI GCATC 4 cut(s) 247, 508, 672, 1366
SfcI CTRYAG 1 cut(s) 1731
SfuI TTCGAA 1 cut(s) 566
SinI GGWCC 2 cut(s) 104, 502
SmiMI CAYNNNNRTG 3 cut(s) 489, 567, 969
SmlI CTYRAG 3 cut(s) 1019, 1649, 1851
SmoI CTYRAG 3 cut(s) 1019, 1649, 1851
Sse9I AATT 7 cut(s) 41, 629, 892, 1070, 1199, 1254, 1451
SsiI CCGC 5 cut(s) 11, 296, 433, 871, 1848
SspMI CTAG 5 cut(s) 84, 846, 948, 977, 1347
StyD4I CCNGG 4 cut(s) 607, 733, 774, 1812
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 488, 1662
TaiI ACGT 3 cut(s) 377, 822, 1051
TaqI TCGA 8 cut(s) 353, 566, 882, 906, 1263, 1535, 1560, 1657
TaqII GACCGA 1 cut(s) 1793
TasI AATT 7 cut(s) 41, 629, 892, 1070, 1199, 1254, 1451
TatI WGTACW 1 cut(s) 990
TauI GCSGC 3 cut(s) 14, 299, 1850
TfiI GAWTC 7 cut(s) 53, 319, 355, 779, 876, 999, 1557
Tru1I TTAA 5 cut(s) 554, 705, 1194, 1202, 1862
Tru9I TTAA 5 cut(s) 554, 705, 1194, 1202, 1862
TscAI CASTG 2 cut(s) 237, 1791
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 5 cut(s) 74, 236, 941, 944, 1844
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 9 cut(s) 158, 261, 555, 935, 1474, 1558, 1596, 1689, 1707
TspGWI ACGGA 1 cut(s) 1616
TspRI CASTG 2 cut(s) 237, 1791
Van91I CCANNNNNTGG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 104, 502
XapI RAATTY 2 cut(s) 892, 1451
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 3 cut(s) 997, 1383, 1470
XspI CTAG 5 cut(s) 84, 846, 948, 977, 1347
Zsp2I ATGCAT 1 cut(s) 1381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.