Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005056

Physical Location & Seq

Genomic Coordinates Reverse (-)

17260453 .. 17260945

Gene Structure 493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTATACATGTGAACGATCACTGGTTGGGGGGTTTGAGAAGGTGTATGAGATTGGACGAATATTCAGGAATGAAGGCATTTCAACTCGTCATAATCTTGAATTTACCACTATAGAGATGTATGAAGCATATTCAGACTATGAAAGCATGATGAACATGACAGAGGAAATTGTTACACGGTGTGCACTTGCAGGTCACAGGAAGCTTACTCTTGATTACCAGATCTCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

78

Amino Acids

9.06

Weight (kDa)

5.05

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	6 - 63	2.7e-19	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11710 AT3G30805
fragaria_vesca	FvH4_2g08732 FvH4_4g07860 FvH4_4g07860 FvH4_4g07860 FvH4_6g23270
malus_domestica	MD03G1170800.v1.1 MD13G1247500.v1.1 MD13G1247600.v1.1 MD13G1248200.v1.1 MD16G1255000.v1.1
prunus_persica	Prupe.1G082400_v2.0.a1 Prupe.1G082400_v2.0.a1 Prupe.1G083700_v2.0.a1
pyrus_communis	pycom03g12770 pycom13g21870 pycom13g21930 pycom16g21650
rosa_chinensis	RchiOBHm_Chr4g0401131
rosa_laevigata	RLG00000009161
rosa_multiflora	Rmu_sc0001909.1_g000026 Rmu_sc0037183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345980
rosa_rugosa	Rorug02G0525300 Rorug04G0028100
rosa_samantha	Rh2DG614600 Rh4BG100600 Rh4DG097900
rosa_wichuraiana	Rw4G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	101
AdeI	CACNNNGTG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	84, 101
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	17, 222
BspMI	ACCTGC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	17, 222
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	180
BstKTI	GATC	2 cut(s)	20, 225
BstMBI	GATC	2 cut(s)	17, 222
BstNSI	RCATGY	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BstZ17I	GTATAC	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	182
CviAII	CATG	3 cut(s)	9, 148, 157
CviJI	RGCY	1 cut(s)	205
CviKI_1	RGCY	1 cut(s)	205
DpnI	GATC	2 cut(s)	19, 224
DpnII	GATC	2 cut(s)	17, 222
DraIII	CACNNNGTG	1 cut(s)	182
FaeI	CATG	3 cut(s)	12, 151, 160
FatI	CATG	3 cut(s)	8, 147, 156
FblI	GTMKAC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	12, 151, 160
HindIII	AAGCTT	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	6, 14, 185
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	3 cut(s)	67, 98, 212
Hpy8I	GTNNAC	3 cut(s)	6, 14, 185
HpyAV	CCTTC	2 cut(s)	34, 68
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	185, 191
Hsp92II	CATG	3 cut(s)	12, 151, 160
Kzo9I	GATC	2 cut(s)	17, 222
LpnPI	CCDG	4 cut(s)	8, 52, 177, 184
MaeIII	GTNAC	2 cut(s)	172, 194
MalI	GATC	2 cut(s)	19, 224
MboI	GATC	2 cut(s)	17, 222
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	101, 168
MnlI	CCTC	1 cut(s)	157
NdeII	GATC	2 cut(s)	17, 222
NlaIII	CATG	3 cut(s)	12, 151, 160
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	12
PciI	ACATGT	1 cut(s)	8
PscI	ACATGT	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	17, 222
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	3 cut(s)	45, 196, 207
SfcI	CTRYAG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	101, 168
SspI	AATATT	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	180
TasI	AATT	2 cut(s)	101, 168
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	87, 138, 156, 167
TspRI	CASTG	1 cut(s)	27
VneI	GTGCAC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.