Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005056

Physical Location & Seq

Genomic Coordinates Forward (+)

84594125 .. 84594835

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG614600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACCGAGGAAATGTTGAGTGGGATGGTCAAGGAAATTACCGGAGGGTACAAAGTTAAGTACCATTCAAATGGGCTTGATAAGGATCCTATTGAGATTGATTTCACTCCCCCTTTTCGAAGGATCGACATGGTTGTAGAACTAAACAAGATTGCAGGTCTCAACATTAATCCCAAGGATCTTTCCAGTGAGGAAGTTAACAGTTATCTTAAAGAGGCATGCAAGAAGTTTGATATCAAATGTTCTCCTCCTGAAACAACAGCTCGTTTGTTGGACAAGCTTGTGGGTCACTTTTTAGAGGAGACGTGTGTAAATCCAGCTTTCATAATCAACCATCCTGAGATAATGAGTCCGTTAGCCATGTGGCATAGATCAAAGCCTGGCCTGACTGAACGGTTCGAGTTGTTTATCAATAAACATGAAGTTTGCAATGCATACACTGAATTGAATGATCCTGTAGTACAACGCCAACAGTTTGCTGGTCAGCTCAAGGATCGACAGTCGGGTGATGATGAAGCAATGGCTCTGGATGAAACATTTTGTACTGCTCTCGAGTATGGGTTACCTCCTACTGGTGGCTGGGGTTTGGGTGTTGACCGCCTATGTATGTTGTTAACTGACTCACAGAATATTAAAGAAGTGCTTCTCTTCCCAGCCATGAAACCACAAGATGATCAACCTCCTGCAAAACCAACAACTGCAGGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016874 GO:0016875 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

4.97

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	1 - 220	3e-40	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11710 AT3G30805
fragaria_vesca	FvH4_2g08732 FvH4_4g07860 FvH4_4g07860 FvH4_4g07860 FvH4_6g23270
malus_domestica	MD03G1170800.v1.1 MD13G1247500.v1.1 MD13G1247600.v1.1 MD13G1248200.v1.1 MD16G1255000.v1.1
prunus_persica	Prupe.1G082400_v2.0.a1 Prupe.1G082400_v2.0.a1 Prupe.1G083700_v2.0.a1
pyrus_communis	pycom03g12770 pycom13g21870 pycom13g21930 pycom16g21650
rosa_chinensis	RchiOBHm_Chr4g0401131
rosa_laevigata	RLG00000009161
rosa_multiflora	Rmu_sc0001909.1_g000026 Rmu_sc0037183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345980
rosa_rugosa	Rorug02G0525300 Rorug04G0028100
rosa_samantha	Rh2DG614600 Rh4BG100600 Rh4DG097900
rosa_wichuraiana	Rw4G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	692
Acc36I	ACCTGC	2 cut(s)	146, 692
AciI	CCGC	1 cut(s)	598
AclWI	GGATC	6 cut(s)	80, 93, 131, 186, 446, 501
AfaI	GTAC	4 cut(s)	50, 62, 462, 544
AfiI	CCNNNNNNNGG	2 cut(s)	572, 575
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	69, 448
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	263, 280, 320, 487
AluI	AGCT	4 cut(s)	263, 280, 320, 487
Alw26I	GTCTC	2 cut(s)	164, 296
AlwI	GGATC	6 cut(s)	80, 93, 131, 186, 446, 501
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	382
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	518
AsuII	TTCGAA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	85
BccI	CCATC	2 cut(s)	19, 342
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	164, 296
BfmI	CTRYAG	2 cut(s)	456, 699
BfuAI	ACCTGC	2 cut(s)	146, 692
Bme1390I	CCNGG	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	6, 174
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 575
Bse1I	ACTGG	2 cut(s)	186, 577
Bse3DI	GCAATG	2 cut(s)	436, 525
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	6, 174
BseGI	GGATG	3 cut(s)	30, 334, 535
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	572, 575
BseMI	GCAATG	2 cut(s)	436, 525
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	186, 577
BseRI	GAGGAG	2 cut(s)	237, 314
BseYI	CCCAGC	2 cut(s)	579, 652
BshFI	GGCC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	572, 575
BsmAI	GTCTC	2 cut(s)	164, 296
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	118
Bsp143I	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	2 cut(s)	146, 692
BspPI	GGATC	6 cut(s)	80, 93, 131, 186, 446, 501
BspT104I	TTCGAA	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	436, 525
BsrI	ACTGG	2 cut(s)	186, 577
BssECI	CCNNGG	2 cut(s)	6, 174
BssMI	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	203, 396, 474, 501
Bst6I	CTCTTC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	339, 708
BstEII	GGTNACC	1 cut(s)	561
BstF5I	GGATG	3 cut(s)	30, 334, 535
BstKTI	GATC	7 cut(s)	88, 126, 181, 374, 454, 496, 676
BstMAI	GTCTC	2 cut(s)	164, 296
BstMBI	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	2 cut(s)	456, 699
BstX2I	RGATCY	2 cut(s)	85, 178
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	2 cut(s)	85, 178
BsuRI	GGCC	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	30, 334, 535
BtsIMutI	CAGTG	2 cut(s)	193, 438
BveI	ACCTGC	2 cut(s)	146, 692
Cac8I	GCNNGC	1 cut(s)	220
Csp6I	GTAC	4 cut(s)	49, 61, 461, 543
CviAII	CATG	5 cut(s)	130, 219, 361, 419, 658
CviQI	GTAC	4 cut(s)	49, 61, 461, 543
DdeI	CTNAG	2 cut(s)	339, 708
DpnI	GATC	7 cut(s)	87, 125, 180, 373, 453, 495, 675
DpnII	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	561
EcoO65I	GGTNACC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	5 cut(s)	133, 222, 364, 422, 661
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FatI	CATG	5 cut(s)	129, 218, 360, 418, 657
FbaI	TGATCA	1 cut(s)	673
FokI	GGATG	3 cut(s)	37, 321, 542
GsaI	CCCAGC	2 cut(s)	583, 656
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	5 cut(s)	133, 222, 364, 422, 661
HincII	GTYRAC	3 cut(s)	199, 595, 615
HindII	GTYRAC	3 cut(s)	199, 595, 615
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	2 cut(s)	349, 620
HpaI	GTTAAC	2 cut(s)	199, 615
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	3 cut(s)	199, 595, 615
Hpy188III	TCNNGA	4 cut(s)	251, 338, 527, 551
Hpy8I	GTNNAC	3 cut(s)	199, 595, 615
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	4 cut(s)	203, 396, 474, 501
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	6 cut(s)	155, 222, 429, 434, 686, 701
HpyF3I	CTNAG	2 cut(s)	339, 708
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	5 cut(s)	133, 222, 364, 422, 661
Ksp22I	TGATCA	1 cut(s)	673
KspAI	GTTAAC	2 cut(s)	199, 615
Kzo9I	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	287, 561
MalI	GATC	7 cut(s)	87, 125, 180, 373, 453, 495, 675
MboI	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
MboII	GAAGA	1 cut(s)	640
MflI	RGATCY	2 cut(s)	85, 178
MluCI	AATT	2 cut(s)	36, 443
MlyI	GAGTC	2 cut(s)	358, 614
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	7 cut(s)	38, 184, 208, 258, 292, 576, 690
Mph1103I	ATGCAT	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	6 cut(s)	57, 168, 198, 210, 614, 633
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
NdeII	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
NlaIII	CATG	5 cut(s)	133, 222, 364, 422, 661
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	551
PaqCI	CACCTGC	1 cut(s)	692
PdmI	GAANNNNTTC	1 cut(s)	642
PleI	GAGTC	2 cut(s)	357, 614
PpsI	GAGTC	2 cut(s)	357, 614
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	561
PspFI	CCCAGC	2 cut(s)	579, 652
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	2 cut(s)	85, 178
RsaI	GTAC	4 cut(s)	50, 62, 462, 544
RsaNI	GTAC	4 cut(s)	49, 61, 461, 543
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	6 cut(s)	57, 168, 198, 210, 614, 633
Sau3AI	GATC	7 cut(s)	85, 123, 178, 371, 451, 493, 673
SchI	GAGTC	2 cut(s)	358, 614
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	9 cut(s)	160, 265, 282, 308, 322, 489, 568, 682, 706
SfcI	CTRYAG	2 cut(s)	456, 699
Sfr274I	CTCGAG	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	488, 551
SmoI	CTYRAG	2 cut(s)	488, 551
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	36, 443
SsiI	CCGC	1 cut(s)	598
SspI	AATATT	1 cut(s)	631
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	4 cut(s)	203, 396, 474, 501
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	5 cut(s)	118, 126, 399, 496, 552
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	36, 443
TatI	WGTACW	2 cut(s)	460, 542
Tru1I	TTAA	6 cut(s)	57, 168, 198, 210, 614, 633
Tru9I	TTAA	6 cut(s)	57, 168, 198, 210, 614, 633
TscAI	CASTG	2 cut(s)	193, 445
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	313, 435, 528, 546, 674
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	193, 445
VspI	ATTAAT	1 cut(s)	168
XceI	RCATGY	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	642
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.