Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005056

Physical Location & Seq

Genomic Coordinates Forward (+)

7652689 .. 7655775

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08732.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAATCCTTTTTCCTTCTCGCGAACCACGGGAGCGCCTAGCGCCCAGAGGATCAAACAAGCGTGTACACACACTGAAAAAGTGACTCTCTGGCCGCAGTTATTTAGCTGGTATCCCGAGATTGAAGAGATTGGTGACAATACTCCAGAGAAAGCGGCGCTTTCGTGTAACATGCTATGGTCTCAACGCCATCGTGCTATGAGCCGAAGAAATCATAAGATATGGGTAAGAGTTTTCGCAGATCTCCCTATTACCGGGAAACCTATAGAGGAACCCTACTGCGAGAGGGACGCCTCGCGAGCCGGGCTTCTAGAGATGAGGCCTTTTGGCGAAGCCAAGAATGAAGACATTTCAACTCGTCATAATCCTGAATTTACCACTATAGAGATGTATGAAGCATATTCAGACTATGAAAGCATGATGAACATGACAGAGGAAATTGTTACACGGTGTGTACTTGCAGGTCACGGGAAGCTTACTCTTGATTACCAGGGGGTGGAGATACATCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

172

Amino Acids

19.79

Weight (kDa)

5.56

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	114 - 154	1.7e-09	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11710 AT3G30805
fragaria_vesca	FvH4_2g08732 FvH4_4g07860 FvH4_4g07860 FvH4_4g07860 FvH4_6g23270
malus_domestica	MD03G1170800.v1.1 MD13G1247500.v1.1 MD13G1247600.v1.1 MD13G1248200.v1.1 MD16G1255000.v1.1
prunus_persica	Prupe.1G082400_v2.0.a1 Prupe.1G082400_v2.0.a1 Prupe.1G083700_v2.0.a1
pyrus_communis	pycom03g12770 pycom13g21870 pycom13g21930 pycom16g21650
rosa_chinensis	RchiOBHm_Chr4g0401131
rosa_laevigata	RLG00000009161
rosa_multiflora	Rmu_sc0001909.1_g000026 Rmu_sc0037183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345980
rosa_rugosa	Rorug02G0525300 Rorug04G0028100
rosa_samantha	Rh2DG614600 Rh4BG100600 Rh4DG097900
rosa_wichuraiana	Rw4G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccII	CGCG	2 cut(s)	22, 298
AciI	CCGC	2 cut(s)	95, 155
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	67, 456
AfiI	CCNNNNNNNGG	2 cut(s)	254, 496
AgsI	TTSAA	2 cut(s)	125, 354
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	2 cut(s)	108, 475
AluI	AGCT	2 cut(s)	108, 475
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	92, 320
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	37, 44, 160
AsuC2I	CCSGG	2 cut(s)	256, 304
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	351
BccI	CCATC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	491
BciVI	GTATCC	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	256, 304
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	39, 311
BfmI	CTRYAG	2 cut(s)	264, 381
BfoI	RGCGCY	3 cut(s)	38, 45, 161
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	2 cut(s)	95, 156
BlsI	GCNGC	2 cut(s)	96, 157
Bme1390I	CCNGG	3 cut(s)	256, 304, 491
BmeT110I	CYCGRG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	3 cut(s)	256, 304, 491
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	129
BpuMI	CCSGG	2 cut(s)	256, 304
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	27, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 496
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	27, 490
BseLI	CCNNNNNNNGG	2 cut(s)	254, 496
Bsh1236I	CGCG	2 cut(s)	22, 298
BshFI	GGCC	2 cut(s)	94, 322
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	255, 303
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	254, 496
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	94, 322
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	51, 241
Bsp68I	TCGCGA	2 cut(s)	22, 298
BspACI	CCGC	2 cut(s)	95, 155
BspANI	GGCC	2 cut(s)	94, 322
BspFNI	CGCG	2 cut(s)	22, 298
BspLI	GGNNCC	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	27, 490
BssMI	GATC	2 cut(s)	51, 241
BssNI	GRCGYC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	22, 298
BstH2I	RGCGCY	3 cut(s)	38, 45, 161
BstHHI	GCGC	3 cut(s)	37, 44, 160
BstKTI	GATC	2 cut(s)	54, 244
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	51, 241
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 299, 304
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	254, 302, 489
BstSFI	CTRYAG	2 cut(s)	264, 381
BstUI	CGCG	2 cut(s)	22, 298
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	94, 322
BtgI	CCRYGG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	72
BtuMI	TCGCGA	2 cut(s)	22, 298
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	3 cut(s)	37, 44, 160
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	66, 455
CviAII	CATG	3 cut(s)	172, 418, 427
CviJI	RGCY	8 cut(s)	94, 108, 204, 302, 307, 322, 335, 475
CviKI_1	RGCY	8 cut(s)	94, 108, 204, 302, 307, 322, 335, 475
CviQI	GTAC	2 cut(s)	66, 455
DpnI	GATC	2 cut(s)	53, 243
DpnII	GATC	2 cut(s)	51, 241
DraIII	CACNNNGTG	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	175, 421, 430
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	3 cut(s)	171, 417, 426
Fnu4HI	GCNGC	2 cut(s)	95, 156
Fsp4HI	GCNGC	2 cut(s)	95, 156
FspBI	CTAG	2 cut(s)	39, 311
GlaI	GCGC	3 cut(s)	36, 43, 159
GluI	GCNGC	2 cut(s)	95, 156
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	3 cut(s)	38, 45, 161
HaeIII	GGCC	2 cut(s)	94, 322
HapII	CCGG	2 cut(s)	255, 303
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	3 cut(s)	37, 44, 160
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	175, 421, 430
Hin6I	GCGC	3 cut(s)	35, 42, 158
HinP1I	GCGC	3 cut(s)	35, 42, 158
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	4, 85
HpaII	CCGG	2 cut(s)	255, 303
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	66, 68, 455
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	8 cut(s)	21, 116, 146, 297, 311, 368, 482, 509
Hpy8I	GTNNAC	3 cut(s)	66, 68, 455
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4V	TGCA	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 299, 304
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	175, 421, 430
HspAI	GCGC	3 cut(s)	35, 42, 158
Kzo9I	GATC	2 cut(s)	51, 241
LmnI	GCTCC	1 cut(s)	32
MaeI	CTAG	2 cut(s)	39, 311
MaeIII	GTNAC	5 cut(s)	82, 134, 167, 442, 464
MalI	GATC	2 cut(s)	53, 243
MboI	GATC	2 cut(s)	51, 241
MboII	GAAGA	3 cut(s)	137, 219, 356
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	371, 438
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	42, 262, 279, 304, 312, 427
MspI	CCGG	2 cut(s)	255, 303
MspR9I	CCNGG	3 cut(s)	256, 304, 491
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	2 cut(s)	22, 298
MwoI	GCNNNNNNNGC	3 cut(s)	41, 299, 304
NciI	CCSGG	2 cut(s)	256, 304
NdeII	GATC	2 cut(s)	51, 241
NlaIII	CATG	3 cut(s)	175, 421, 430
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	3 cut(s)	82, 134, 464
NruI	TCGCGA	2 cut(s)	22, 298
NspI	RCATGY	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	96, 157
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	241
RruI	TCGCGA	2 cut(s)	22, 298
RsaI	GTAC	2 cut(s)	67, 456
RsaNI	GTAC	2 cut(s)	66, 455
SatI	GCNGC	2 cut(s)	95, 156
Sau3AI	GATC	2 cut(s)	51, 241
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	256, 304, 491
SetI	ASST	4 cut(s)	110, 265, 466, 477
SfcI	CTRYAG	2 cut(s)	264, 381
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	2 cut(s)	371, 438
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	2 cut(s)	95, 155
SspMI	CTAG	2 cut(s)	39, 311
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	3 cut(s)	254, 302, 489
TaaI	ACNGT	1 cut(s)	450
TasI	AATT	2 cut(s)	371, 438
TatI	WGTACW	2 cut(s)	65, 454
TauI	GCSGC	2 cut(s)	97, 158
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	3 cut(s)	82, 134, 464
Tsp45I	GTSAC	3 cut(s)	82, 134, 464
TspDTI	ATGAA	5 cut(s)	17, 357, 408, 426, 437
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	496
XapI	RAATTY	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	2 cut(s)	39, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.