AT3G12685

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006452
Physical Location & Seq
Reverse (-)
4029183 .. 4030355
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12685.1

Sequence Viewer

Length: 642 bp
ATGTTGATGAAGCACTGTTTTGTGTCTCATAACGCCAATGATCTCTGTTTCTCTTTCTCCAACTCCAAATTCAATCTTGCAAGCTGCCCAAAGAAGCCACCTCGTCTCACCTGCGTTGTCAATGTTGGATTCCAAGATATCGCTGAGGTCATCCACAACAAGGTACTCATAGCTGCTGGGACTTCTGCTGTGATTGGGCAGCTCTCAAAGCCATTCACTTCTGTCGTTTTGTATGGGAAAAATCTGGACTTTAGAAGTGTCTTTCAAGCTGGAGGTTTCCCTTCAACACATTCTTCTTCTGTTGTGGCTGCAGCAACTGCTATTGCTTTTGAAAGGGGATTTGCTGACTCCATTTTTGGTCTAACTGTGGTTTATGCTGGCCTTATCATGTATGATGCCCAGGGGGTGAGGAGAGAAGTTGGAAAACATGCCAAAGTGTTGAACAAACTAACAGCTAATGCTCGTAGAAGTGAAGTAATGAGTTTAAAGGGCAACGAATCTAACAAAGCTTTGACATCAGAAGAGATCAGTGAGGAGATTGCTCCTCCATTGAAAGAATCAATAGGACACACTGAAGTTGAAGTCATAGCAGGGGCTTTGTTCGGTTTCTTAGTTACCCTCAGTGTTTATTCCCTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

213

Amino Acids

22.88

Weight (kDa)

8.67

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 52 - 205 1e-38 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 7 cut(s) 73, 266, 285, 332, 442, 553, 581
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 6 cut(s) 84, 173, 202, 269, 455, 509
AluI AGCT 6 cut(s) 84, 173, 202, 269, 455, 509
Alw26I GTCTC 2 cut(s) 30, 110
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 5 cut(s) 84, 173, 199, 308, 311
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AsuHPI GGTGA 2 cut(s) 100, 418
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 5 cut(s) 71, 160, 211, 295, 323
BciT130I CCWGG 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 30, 110
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 5 cut(s) 85, 174, 200, 309, 312
BlsI GCNGC 5 cut(s) 86, 175, 201, 310, 313
Bme1390I CCNGG 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 399, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 399, 400
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 135, 634
BseRI GAGGAG 3 cut(s) 424, 534, 548
BseXI GCAGC 5 cut(s) 71, 160, 211, 295, 323
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 2 cut(s) 30, 110
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 40, 525
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 136, 633
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 399, 400
BssMI GATC 2 cut(s) 40, 525
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 17, 367
Bst6I CTCTTC 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 82, 379
BstDEI CTNAG 3 cut(s) 144, 610, 620
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 2 cut(s) 43, 528
BstMAI GTCTC 2 cut(s) 30, 110
BstMBI GATC 2 cut(s) 40, 525
BstMWI GCNNNNNNNGC 2 cut(s) 208, 317
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 5 cut(s) 71, 160, 211, 295, 323
BsuRI GGCC 1 cut(s) 381
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 4 cut(s) 13, 535, 570, 628
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 82, 379
CaiI CAGNNNCTG 1 cut(s) 317
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 388, 428
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 3 cut(s) 144, 610, 620
DpnI GATC 2 cut(s) 42, 527
DpnII GATC 2 cut(s) 40, 525
DraI TTTAAA 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 594
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 2 cut(s) 391, 431
FaiI YATR 8 cut(s) 30, 170, 234, 375, 389, 393, 429, 587
FaqI GGGAC 1 cut(s) 193
FatI CATG 2 cut(s) 387, 427
Fnu4HI GCNGC 5 cut(s) 85, 174, 200, 309, 312
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 5 cut(s) 85, 174, 200, 309, 312
GluI GCNGC 5 cut(s) 85, 174, 200, 309, 312
GsaI CCCAGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 381
Hin1II CATG 2 cut(s) 391, 431
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 4 cut(s) 129, 347, 497, 557
HphI GGTGA 2 cut(s) 100, 418
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 17, 367
HpyCH4V TGCA 2 cut(s) 80, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 317
HpyF3I CTNAG 3 cut(s) 144, 610, 620
Hsp92II CATG 2 cut(s) 391, 431
Kzo9I GATC 2 cut(s) 40, 525
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 8 cut(s) 124, 162, 230, 255, 363, 386, 413, 576
Lsp1109I GCAGC 5 cut(s) 71, 160, 211, 295, 323
LweI GCATC 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 613
MalI GATC 2 cut(s) 42, 527
MboI GATC 2 cut(s) 40, 525
MboII GAAGA 3 cut(s) 285, 288, 533
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 3 cut(s) 84, 106, 400
MnlI CCTC 7 cut(s) 111, 139, 266, 402, 526, 555, 629
MseI TTAA 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 208, 317
NdeII GATC 2 cut(s) 40, 525
NlaIII CATG 2 cut(s) 391, 431
NspI RCATGY 1 cut(s) 431
PaqCI CACCTGC 1 cut(s) 119
PasI CCCWGGG 1 cut(s) 400
PfeI GAWTC 3 cut(s) 129, 497, 557
PkrI GCNGC 5 cut(s) 86, 175, 201, 310, 313
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 399
PstI CTGCAG 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 5 cut(s) 85, 174, 200, 309, 312
Sau3AI GATC 2 cut(s) 40, 525
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 309
Sse9I AATT 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 17, 367
TasI AATT 1 cut(s) 68
TfiI GAWTC 3 cut(s) 129, 497, 557
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TscAI CASTG 4 cut(s) 20, 535, 577, 628
TseI GCWGC 5 cut(s) 84, 173, 199, 308, 311
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 4 cut(s) 20, 535, 577, 628
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.