Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010181.1

Orthogroup ID

OG0006452

Physical Location & Seq

Genomic Coordinates Forward (+)

6978 .. 9557

Gene Structure 2580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010181.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgttactccaattttggagcatttccagctgtggtgcatttcacaattcttgggctctcactcactcaggaaagcaccataatctcatgtttggcaaacctctctgcctcagaaagtccaaaccatccacaccctttcgcctgaaagctcagttactagatgaatttgctcaacttgcccataacaaggttttggttgcagctggagtttgtggggtaattgggcagctgtccaagcctttcactaatgtaattctgtatggcaaagagtttgatttcaagtcaacccttcaggccggaggcttcccttccacgcattcctctgcaatggtggctactgcaacaacgcttggccttgaaagggggctgtcggattcgatatttggcttgactcttgtttatgcaggcattgtgatgtatgatgcccagggggtgagaagagaagctggaaaccatgcaagagtactgaacaaaatactgcctcaaattacaagggcgaacacaatttcatcccaagatagaggtagacttaattctcaacccaaaccatcatcttcgttacagttggatagactgaagtcccttgcaaagtctttttcatcgaaagcaacaaatgcccctttagtatctcagtcaatcaccgaaatgagtcaaaccactcagacgcagatcatgtcttctggcttaggaaccgatgctgaagaaggattagaaagggctggaagctatactccactgaaagaaacgattggccacactgaagttgaagtcacagccggagctcttttgggtttcttagtaggcttggcagtgtatgccacattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF212

Protein Analysis

275

Amino Acids

29.5

Weight (kDa)

9.49

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12685
fragaria_vesca	FvH4_3g13660
malus_domestica	MD05G1241400.v1.1
prunus_persica	Prupe.4G124100_v2.0.a1 Prupe.4G124100_v2.0.a1 Prupe.4G124100_v2.0.a1
pyrus_communis	pycom05g21740
rosa_chinensis	RchiOBHm_Chr5g0022891
rosa_laevigata	RLG00000032680
rosa_multiflora	Rmu_sc0000401.1_g000027 Rmu_sc0010181.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342800
rosa_rugosa	Rorug03G0240800 Rorug05G0075200 Rorug05G0075300.1
rosa_samantha	Rh3BG325700 Rh4CG087900 Rh5AG161800 Rh5BG160900 Rh5CG175500 Rh5DG162200 Rh6DG193000
rosa_wichuraiana	Rw0G002830 Rw0G020830 Rw1G000420 Rw5G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	526
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	4 cut(s)	275, 596, 720, 780
AdeI	CACNNNGTG	1 cut(s)	825
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	187, 361
AgsI	TTSAA	3 cut(s)	280, 359, 767
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	7 cut(s)	30, 149, 203, 229, 446, 726, 782
AluI	AGCT	7 cut(s)	30, 149, 203, 229, 446, 726, 782
Alw21I	GWGCWC	1 cut(s)	784
AoxI	GGCC	3 cut(s)	294, 352, 751
ApeKI	GCWGC	2 cut(s)	200, 226
ApoI	RAATTY	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	445, 631
BalI	TGGCCA	1 cut(s)	753
BanII	GRGCYC	2 cut(s)	58, 784
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	784
BbvI	GCAGC	2 cut(s)	212, 238
BccI	CCATC	2 cut(s)	133, 556
BciT130I	CCWGG	1 cut(s)	428
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	2 cut(s)	201, 227
BlsI	GCNGC	2 cut(s)	202, 228
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	691
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	412, 685
BoxI	GACNNNNGTC	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	685
BsaJI	CCNNGG	2 cut(s)	426, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 361
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	426, 427
BseGI	GGATG	2 cut(s)	125, 509
BseLI	CCNNNNNNNGG	2 cut(s)	187, 361
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	5 cut(s)	81, 124, 164, 644, 674
BseXI	GCAGC	2 cut(s)	212, 238
BshFI	GGCC	3 cut(s)	296, 354, 753
BsiHKAI	GWGCWC	1 cut(s)	784
BsiSI	CCGG	2 cut(s)	297, 777
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	187, 361
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	296, 354, 753
Bsp1286I	GDGCHC	2 cut(s)	58, 784
Bsp143I	GATC	1 cut(s)	669
BspANI	GGCC	3 cut(s)	296, 354, 753
BspCNI	CTCAG	5 cut(s)	80, 123, 163, 643, 673
BspLI	GGNNCC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	426, 427
BssMI	GATC	1 cut(s)	669
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	564
Bst6I	CTCTTC	1 cut(s)	433
BstAPI	GCANNNNNTGC	2 cut(s)	614, 815
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	7 cut(s)	67, 110, 150, 630, 660, 685, 796
BstF5I	GGATG	2 cut(s)	125, 509
BstKTI	GATC	1 cut(s)	672
BstMBI	GATC	1 cut(s)	669
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 176, 235, 332, 614, 815
BstNI	CCWGG	1 cut(s)	428
BstPAI	GACNNNNGTC	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	212, 238
BstV2I	GAAGAC	1 cut(s)	669
BsuRI	GGCC	3 cut(s)	296, 354, 753
BtsCI	GGATG	2 cut(s)	125, 509
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	734, 756, 816
Cac8I	GCNNGC	1 cut(s)	406
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	3 cut(s)	88, 455, 673
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	7 cut(s)	67, 110, 150, 630, 660, 685, 796
DpnI	GATC	1 cut(s)	671
DpnII	GATC	1 cut(s)	669
DraIII	CACNNNGTG	1 cut(s)	825
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
Ecl136II	GAGCTC	1 cut(s)	782
Eco24I	GRGCYC	2 cut(s)	58, 784
Eco53kI	GAGCTC	1 cut(s)	782
Eco57I	CTGAAG	4 cut(s)	275, 596, 720, 780
EcoICRI	GAGCTC	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	58, 784
FaeI	CATG	3 cut(s)	91, 458, 676
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	3 cut(s)	87, 454, 672
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	201, 227
FokI	GGATG	2 cut(s)	112, 496
FriOI	GRGCYC	2 cut(s)	58, 784
Fsp4HI	GCNGC	2 cut(s)	201, 227
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	201, 227
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	296, 354, 753
HapII	CCGG	2 cut(s)	297, 777
HgaI	GACGC	1 cut(s)	673
Hin1II	CATG	3 cut(s)	91, 458, 676
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	374, 391, 649
HpaII	CCGG	2 cut(s)	297, 777
HphI	GGTGA	2 cut(s)	445, 631
Hpy166II	GTNNAC	2 cut(s)	285, 527
Hpy188I	TCNGA	3 cut(s)	113, 373, 663
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	2 cut(s)	285, 527
HpyAV	CCTTC	3 cut(s)	299, 318, 698
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4V	TGCA	7 cut(s)	38, 200, 326, 341, 404, 458, 587
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 176, 235, 332, 614, 815
HpyF3I	CTNAG	7 cut(s)	67, 110, 150, 630, 660, 685, 796
Hsp92II	CATG	3 cut(s)	91, 458, 676
Kzo9I	GATC	1 cut(s)	669
LmnI	GCTCC	2 cut(s)	18, 779
Lsp1109I	GCAGC	2 cut(s)	212, 238
LweI	GCATC	2 cut(s)	412, 685
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	4 cut(s)	3, 153, 558, 769
MalI	GATC	1 cut(s)	671
MboI	GATC	1 cut(s)	669
MboII	GAAGA	4 cut(s)	450, 546, 669, 713
MhlI	GDGCHC	2 cut(s)	58, 784
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	8 cut(s)	11, 46, 164, 219, 252, 486, 504, 532
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	385, 658
MmeI	TCCRAC	2 cut(s)	351, 546
MnlI	CCTC	6 cut(s)	111, 119, 293, 331, 492, 515
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	413, 644
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	3 cut(s)	30, 203, 229
MspI	CCGG	2 cut(s)	297, 777
MspR9I	CCNGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	6 cut(s)	27, 176, 235, 332, 614, 815
NdeII	GATC	1 cut(s)	669
NlaIII	CATG	3 cut(s)	91, 458, 676
NlaIV	GGNNCC	1 cut(s)	691
NmuCI	GTSAC	1 cut(s)	769
PasI	CCCWGGG	1 cut(s)	427
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	202, 228
PleI	GAGTC	2 cut(s)	385, 657
PpsI	GAGTC	2 cut(s)	385, 657
PshAI	GACNNNNGTC	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	784
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	691
PvuII	CAGCTG	3 cut(s)	30, 203, 229
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	2 cut(s)	413, 644
SacI	GAGCTC	1 cut(s)	784
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	2 cut(s)	201, 227
Sau3AI	GATC	1 cut(s)	669
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	2 cut(s)	385, 658
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	58, 784
SfaNI	GCATC	2 cut(s)	412, 685
SmiMI	CAYNNNNRTG	2 cut(s)	413, 644
Sse9I	AATT	8 cut(s)	11, 46, 164, 219, 252, 486, 504, 532
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	784
StyD4I	CCNGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	377, 602
TasI	AATT	8 cut(s)	11, 46, 164, 219, 252, 486, 504, 532
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	3 cut(s)	741, 763, 816
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	2 cut(s)	200, 226
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	3 cut(s)	177, 498, 588
TspRI	CASTG	3 cut(s)	741, 763, 816
XapI	RAATTY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	526
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.