Rh5BG160900

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006452
Physical Location & Seq
Reverse (-)
16792704 .. 16795272
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG160900.1

Sequence Viewer

Length: 828 bp
ATGTTGCTCCAATTTTGGAGCATTTCCAGCTGTGGTGCATTTCACAATTCTTGGGCTCTCACTCACTCAGGAAAGCACCATAATCTCATGTTTGACAAACCTCTCTGCCTCAGAAAGTCAAAACCATCCACACCCTTTTGCCTGAAAGCTCAGTTAGTAGATGAATTTGCTCAACTTGCCCATAACAAGGTTTTAGTTGCAGCCGGAGTTTGTGGGGTAATTGGGCAGCTGTCCAAGCCTTTCACTAATGTAATTCTGAATGGCAAAGAGTTTGATTTCAAGTCAACCCTTCAGGCCGGAGGCTTCCCTTCCACGCATTCCTCTGCAATGGTGGCTACTGCAACAACGCTTGGCCTTGAGAGGGGGCTGTCGGATTCAATATTTGGCTTGACTGTTGTTTATGCAGGCATTGTGATGTATGATGCCCAGGGGGTGAGAAGAGAAGCTGGAAACCACGCAAGAGTACTGAACAAAATACTGCCTCAAATTACAAGGGCGAACGCAATCCCATCCCAAGATAGAGGTAGACTTAATTCTCAACCTAAACCATCATCTTCGTTACAGTTGGATAGGCTCAAGTCCCTTGCAAAGTCTTTTTCATCAAAAGCAACAAATGCCCCTTTAGTATCTCAGTCAATCACCGAAATGAGTCAAACCACTCAGACGCAGATCATGTCTTCTGGCTTAGGAACTGATGCTGAAGAAGGTTTAGAAAGGGCTGGAAGTTTTACTCCATTGAAAGAAACGATTGGCCACACTGAAGTTGAAGTCACAGCCGGTGCTCTTTTGGGTTTCTTAGTAGGCTTGGCAGTGTATACCACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

275

Amino Acids

29.42

Weight (kDa)

9.21

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 61 - 267 4.5e-36 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 526, 815
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 3 cut(s) 275, 720, 780
AdeI CACNNNGTG 1 cut(s) 825
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 187, 361
AgsI TTSAA 4 cut(s) 280, 378, 739, 767
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 4 cut(s) 30, 149, 229, 446
AluI AGCT 4 cut(s) 30, 149, 229, 446
Alw21I GWGCWC 1 cut(s) 784
AoxI GGCC 3 cut(s) 294, 352, 751
ApeKI GCWGC 2 cut(s) 200, 226
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 445, 631
BalI TGGCCA 1 cut(s) 753
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 2 cut(s) 212, 238
BccI CCATC 3 cut(s) 133, 517, 556
BciT130I CCWGG 1 cut(s) 428
BisI GCNGC 2 cut(s) 201, 227
BlsI GCNGC 2 cut(s) 202, 228
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 412, 685
BpiI GAAGAC 1 cut(s) 669
Bpu10I CCTNAGC 1 cut(s) 685
BpuEI CTTGAG 2 cut(s) 377, 560
BsaJI CCNNGG 2 cut(s) 426, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 361
Bse118I RCCGGY 1 cut(s) 776
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 426, 427
BseGI GGATG 2 cut(s) 125, 509
BseLI CCNNNNNNNGG 2 cut(s) 187, 361
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 5 cut(s) 81, 124, 164, 644, 674
BseXI GCAGC 2 cut(s) 212, 238
BshFI GGCC 3 cut(s) 296, 354, 753
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 3 cut(s) 204, 297, 777
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 187, 361
BsmFI GGGAC 1 cut(s) 565
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 3 cut(s) 296, 354, 753
Bsp1286I GDGCHC 2 cut(s) 58, 784
Bsp143I GATC 1 cut(s) 669
BspANI GGCC 3 cut(s) 296, 354, 753
BspCNI CTCAG 5 cut(s) 80, 123, 163, 643, 673
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 776
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 2 cut(s) 426, 427
BssMI GATC 1 cut(s) 669
BssNAI GTATAC 1 cut(s) 816
Bst1107I GTATAC 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 394, 564
Bst6I CTCTTC 1 cut(s) 433
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 7 cut(s) 67, 110, 150, 630, 660, 685, 796
BstF5I GGATG 2 cut(s) 125, 509
BstKTI GATC 1 cut(s) 672
BstMBI GATC 1 cut(s) 669
BstMWI GCNNNNNNNGC 5 cut(s) 27, 176, 235, 332, 614
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 212, 238
BstV2I GAAGAC 1 cut(s) 669
BstZ17I GTATAC 1 cut(s) 816
BsuRI GGCC 3 cut(s) 296, 354, 753
BtsCI GGATG 2 cut(s) 125, 509
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 2 cut(s) 756, 816
Cac8I GCNNGC 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 776
CseI GACGC 1 cut(s) 673
Csp6I GTAC 1 cut(s) 464
CviAII CATG 2 cut(s) 88, 673
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 7 cut(s) 67, 110, 150, 630, 660, 685, 796
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
DraIII CACNNNGTG 1 cut(s) 825
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 58
Eco57I CTGAAG 3 cut(s) 275, 720, 780
EcoRII CCWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 2 cut(s) 91, 676
FaiI YATR 7 cut(s) 81, 89, 183, 402, 420, 674, 816
FaqI GGGAC 1 cut(s) 565
FatI CATG 2 cut(s) 87, 672
FblI GTMKAC 2 cut(s) 526, 815
Fnu4HI GCNGC 2 cut(s) 201, 227
FokI GGATG 2 cut(s) 112, 496
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 201, 227
GluI GCNGC 2 cut(s) 201, 227
HaeIII GGCC 3 cut(s) 296, 354, 753
HapII CCGG 3 cut(s) 204, 297, 777
HgaI GACGC 1 cut(s) 673
Hin1II CATG 2 cut(s) 91, 676
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 2 cut(s) 374, 649
HpaII CCGG 3 cut(s) 204, 297, 777
HphI GGTGA 2 cut(s) 445, 631
Hpy166II GTNNAC 3 cut(s) 285, 527, 816
Hpy188I TCNGA 4 cut(s) 113, 258, 373, 663
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 3 cut(s) 285, 527, 816
HpyAV CCTTC 3 cut(s) 299, 318, 698
HpyCH4III ACNGT 2 cut(s) 394, 564
HpyCH4V TGCA 6 cut(s) 38, 200, 326, 341, 404, 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 176, 235, 332, 614
HpyF3I CTNAG 7 cut(s) 67, 110, 150, 630, 660, 685, 796
Hsp92II CATG 2 cut(s) 91, 676
Kzo9I GATC 1 cut(s) 669
LmnI GCTCC 2 cut(s) 12, 18
Lsp1109I GCAGC 2 cut(s) 212, 238
LweI GCATC 2 cut(s) 412, 685
MaeIII GTNAC 2 cut(s) 558, 769
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 4 cut(s) 450, 546, 669, 713
MhlI GDGCHC 2 cut(s) 58, 784
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 7 cut(s) 11, 46, 164, 219, 252, 486, 532
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 2 cut(s) 351, 546
MnlI CCTC 7 cut(s) 111, 119, 293, 331, 354, 492, 515
Mox20I TGGCCA 1 cut(s) 753
MscI TGGCCA 1 cut(s) 753
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 2 cut(s) 413, 644
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 2 cut(s) 30, 229
MspI CCGG 3 cut(s) 204, 297, 777
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 5 cut(s) 27, 176, 235, 332, 614
NdeII GATC 1 cut(s) 669
NlaIII CATG 2 cut(s) 91, 676
NmuCI GTSAC 1 cut(s) 769
PasI CCCWGGG 1 cut(s) 427
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 202, 228
PleI GAGTC 1 cut(s) 657
PpsI GAGTC 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PvuII CAGCTG 2 cut(s) 30, 229
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 2 cut(s) 413, 644
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 2 cut(s) 201, 227
Sau3AI GATC 1 cut(s) 669
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 58, 784
SetI ASST 9 cut(s) 32, 103, 151, 192, 231, 448, 526, 544, 709
SfaNI GCATC 2 cut(s) 412, 685
SmiMI CAYNNNNRTG 2 cut(s) 413, 644
SmlI CTYRAG 2 cut(s) 356, 575
SmoI CTYRAG 2 cut(s) 356, 575
Sse9I AATT 7 cut(s) 11, 46, 164, 219, 252, 486, 532
SspI AATATT 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 394, 564
TasI AATT 7 cut(s) 11, 46, 164, 219, 252, 486, 532
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 2 cut(s) 763, 816
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 2 cut(s) 200, 226
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 177, 588
TspRI CASTG 2 cut(s) 763, 816
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 526, 815
ZrmI AGTACT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.