RLG00000032680

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006452
Physical Location & Seq
Reverse (-)
17781411 .. 17784013
2603 bp
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UTR
Exon/CDS
Intron
RLM00000032680

Sequence Viewer

Length: 693 bp
ATGTTGCTCCAATTTTGGAGCATTTCCAGCTGTGGTGCATTTCACAAATCTCGGGCTCTCACTCACTCAGAAAAGCACCATAATCTCATGTTTGGCAAACCTCTCTGCCTCAGACAGTCAAAACCATCCGCACCCTTTTGCCTGAAAGCTCAGTTACTAGATGAATTCGCTCAACTTGCCCATAACAAGGCAATGGTGGCTACTGCAACAACGCTTGGCCTTGAGAGGGGGCTGTCGGATTCGATATTTGGCTTGACTCTTGTTTATGCAGGCATTGTGATGTATGATGCCCAGGGGGTGAGAAGAGAAGCTGGAAACCACGCAAGAGTACTGAACAAAATACTGCCTCAAATTACAAGGGCGAACACAATCCCATCCCAAGATAGAGGTAGACTTAATTCTCAACCCAAACCATCATCTTCGTTACAGTTGGATAGACTGAAGTCCCTTGCAACGTCTTTTTCATCGAAAGCAACAAATGCCCCTTTAGTACCTCAGTCAATCACGGAAATGAGTCAAACCACTCAGACGCAAATCATGTCTTCTGGCTTAGGAACCGATGCTGAAGAAGGATTAGAAAGAGCTGGAAGTTATACTTCACTGAAAGAAACGATTGGCCACACTGAAGTTGAAGTCACAGCCGGAGCTCTTTTGGGTTTCTTAGTAGGCTTGGCAGTGTATACCACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

231

Amino Acids

24.83

Weight (kDa)

9.22

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 60 - 222 9.7e-23 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 391, 680
AciI CCGC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 3 cut(s) 461, 585, 645
AdeI CACNNNGTG 1 cut(s) 690
AfaI GTAC 2 cut(s) 330, 492
AfiI CCNNNNNNNGG 2 cut(s) 187, 226
AgsI TTSAA 1 cut(s) 632
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 5 cut(s) 30, 149, 311, 584, 647
AluI AGCT 5 cut(s) 30, 149, 311, 584, 647
Alw21I GWGCWC 1 cut(s) 649
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 2 cut(s) 217, 616
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 51
BalI TGGCCA 1 cut(s) 618
BanII GRGCYC 2 cut(s) 58, 649
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 649
BccI CCATC 3 cut(s) 133, 382, 421
BciT130I CCWGG 1 cut(s) 293
BfaI CTAG 1 cut(s) 158
BmcAI AGTACT 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 277, 550
BoxI GACNNNNGTC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 550
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 291, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 226
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 2 cut(s) 291, 292
BseGI GGATG 2 cut(s) 125, 374
BseLI CCNNNNNNNGG 2 cut(s) 187, 226
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 5 cut(s) 81, 124, 164, 509, 539
BshFI GGCC 2 cut(s) 219, 618
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 2 cut(s) 187, 226
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 2 cut(s) 219, 618
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 58, 649
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 219, 618
BspCNI CTCAG 5 cut(s) 80, 123, 163, 508, 538
BspLI GGNNCC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 291, 292
BssNAI GTATAC 1 cut(s) 681
Bst1107I GTATAC 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 117, 429
Bst6I CTCTTC 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 7 cut(s) 67, 110, 150, 495, 525, 550, 661
BstF5I GGATG 2 cut(s) 125, 374
BstMWI GCNNNNNNNGC 4 cut(s) 27, 176, 197, 479
BstNI CCWGG 1 cut(s) 293
BstPAI GACNNNNGTC 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 534
BstZ17I GTATAC 1 cut(s) 681
BsuRI GGCC 2 cut(s) 219, 618
BtsCI GGATG 2 cut(s) 125, 374
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 3 cut(s) 599, 621, 681
Cac8I GCNNGC 1 cut(s) 271
CseI GACGC 1 cut(s) 538
Csp6I GTAC 2 cut(s) 329, 491
CviAII CATG 2 cut(s) 88, 538
CviQI GTAC 2 cut(s) 329, 491
DdeI CTNAG 7 cut(s) 67, 110, 150, 495, 525, 550, 661
DraIII CACNNNGTG 1 cut(s) 690
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 647
Eco24I GRGCYC 2 cut(s) 58, 649
Eco53kI GAGCTC 1 cut(s) 647
Eco57I CTGAAG 3 cut(s) 461, 585, 645
Eco88I CYCGRG 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 647
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 2 cut(s) 58, 649
FaeI CATG 2 cut(s) 91, 541
FaiI YATR 8 cut(s) 81, 89, 183, 267, 285, 539, 594, 681
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FaqI GGGAC 1 cut(s) 430
FatI CATG 2 cut(s) 87, 537
FblI GTMKAC 2 cut(s) 391, 680
FokI GGATG 2 cut(s) 112, 361
FriOI GRGCYC 2 cut(s) 58, 649
FspBI CTAG 1 cut(s) 158
HaeIII GGCC 2 cut(s) 219, 618
HapII CCGG 1 cut(s) 642
HgaI GACGC 1 cut(s) 538
Hin1II CATG 2 cut(s) 91, 541
HinfI GANTC 3 cut(s) 239, 256, 514
HpaII CCGG 1 cut(s) 642
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 392, 681
Hpy188I TCNGA 4 cut(s) 70, 113, 238, 528
Hpy8I GTNNAC 2 cut(s) 392, 681
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 2 cut(s) 117, 429
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 4 cut(s) 38, 206, 269, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 176, 197, 479
HpyF3I CTNAG 7 cut(s) 67, 110, 150, 495, 525, 550, 661
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 2 cut(s) 91, 541
LmnI GCTCC 3 cut(s) 12, 18, 644
LpnPI CCDG 9 cut(s) 40, 155, 255, 278, 297, 305, 531, 570, 655
LweI GCATC 2 cut(s) 277, 550
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 3 cut(s) 153, 423, 634
MboII GAAGA 4 cut(s) 315, 411, 534, 578
MhlI GDGCHC 2 cut(s) 58, 649
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 4 cut(s) 11, 164, 351, 397
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 2 cut(s) 250, 523
MmeI TCCRAC 2 cut(s) 216, 411
MnlI CCTC 6 cut(s) 111, 119, 219, 357, 380, 504
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 278, 509
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 642
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 27, 176, 197, 479
NlaIII CATG 2 cut(s) 91, 541
NlaIV GGNNCC 1 cut(s) 556
NmuCI GTSAC 1 cut(s) 634
PasI CCCWGGG 1 cut(s) 292
PfeI GAWTC 1 cut(s) 239
PleI GAGTC 2 cut(s) 250, 522
PpsI GAGTC 2 cut(s) 250, 522
PshAI GACNNNNGTC 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 2 cut(s) 330, 492
RsaNI GTAC 2 cut(s) 329, 491
RseI CAYNNNNRTG 2 cut(s) 278, 509
SacI GAGCTC 1 cut(s) 649
SaqAI TTAA 1 cut(s) 396
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 2 cut(s) 250, 523
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 2 cut(s) 58, 649
SetI ASST 9 cut(s) 32, 103, 151, 313, 391, 458, 496, 586, 649
SfaNI GCATC 2 cut(s) 277, 550
SmiMI CAYNNNNRTG 2 cut(s) 278, 509
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 11, 164, 351, 397
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 649
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 117, 429
TaiI ACGT 1 cut(s) 458
TaqI TCGA 2 cut(s) 242, 467
TasI AATT 4 cut(s) 11, 164, 351, 397
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 3 cut(s) 606, 628, 681
TseFI GTSAC 1 cut(s) 634
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 2 cut(s) 177, 453
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 3 cut(s) 606, 628, 681
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 391, 680
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.