Rh4CG087900

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006452
Physical Location & Seq
Forward (+)
15822335 .. 15824155
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG087900.1

Sequence Viewer

Length: 267 bp
ATGGTTTTGGTTGCAGCTGGTGTTTGTGCGGCAATTGGGCAGCTTTCCAAGCCTCTAACTAATGTAATTCTGTATGATAAAGAGTTTGATTTCATGGCAACCGCTGGCGGCTTCCCTTCCACCCTATTTGGCTTAACTGTAGTTTATGCTAGTCTTGTATTGTATGATGCCCAGCTATCAATATATGGGGTGAGAAGAGAAGTAGGAAACCAAGCAAGAGTAGTGAACAAAACTTCGCCTCAAATTACAAGGGTGAACACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

88

Amino Acids

9.45

Weight (kDa)

8.93

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 34 - 80 1.2e-07 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 102, 108
AluBI AGCT 3 cut(s) 17, 43, 175
AluI AGCT 3 cut(s) 17, 43, 175
ApeKI GCWGC 2 cut(s) 14, 40
AsuHPI GGTGA 2 cut(s) 202, 265
BbvI GCAGC 2 cut(s) 26, 52
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 4 cut(s) 15, 30, 41, 109
BlsI GCNGC 4 cut(s) 16, 31, 42, 110
BmsI GCATC 1 cut(s) 157
BseXI GCAGC 2 cut(s) 26, 52
BseYI CCCAGC 1 cut(s) 171
BspACI CCGC 3 cut(s) 29, 102, 108
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 26, 52
Cac8I GCNNGC 1 cut(s) 106
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 1 cut(s) 94
CviJI RGCY 6 cut(s) 17, 43, 52, 111, 132, 175
CviKI_1 RGCY 6 cut(s) 17, 43, 52, 111, 132, 175
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
FaeI CATG 1 cut(s) 97
FaiI YATR 6 cut(s) 75, 95, 147, 165, 184, 186
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 15, 30, 41, 109
Fsp4HI GCNGC 4 cut(s) 15, 30, 41, 109
FspBI CTAG 1 cut(s) 150
GluI GCNGC 4 cut(s) 15, 30, 41, 109
GsaI CCCAGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 97
HphI GGTGA 2 cut(s) 202, 265
Hpy166II GTNNAC 2 cut(s) 226, 256
Hpy188I TCNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 226, 256
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
Hsp92II CATG 1 cut(s) 97
LpnPI CCDG 3 cut(s) 3, 90, 185
Lsp1109I GCAGC 2 cut(s) 26, 52
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 150
MboII GAAGA 1 cut(s) 207
MfeI CAATTG 1 cut(s) 33
MluCI AATT 3 cut(s) 33, 66, 243
MnlI CCTC 2 cut(s) 63, 249
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 17, 104
MunI CAATTG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 49
NlaIII CATG 1 cut(s) 97
PkrI GCNGC 4 cut(s) 16, 31, 42, 110
PspFI CCCAGC 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 4 cut(s) 15, 30, 41, 109
SetI ASST 3 cut(s) 19, 45, 177
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 138
Sse9I AATT 3 cut(s) 33, 66, 243
SsiI CCGC 3 cut(s) 29, 102, 108
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 139
TasI AATT 3 cut(s) 33, 66, 243
TauI GCSGC 2 cut(s) 32, 111
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 2 cut(s) 14, 40
TspDTI ATGAA 1 cut(s) 82
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.