Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000401.1

Orthogroup ID

OG0006452

Physical Location & Seq

Genomic Coordinates Reverse (-)

109109 .. 112772

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000401.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgttgctccaaaattggagcatttccagctgtggtgcatttcacaattcttgggctctcactcactcaggaaagcaccataatctcatgtttggcaaacctctctgcctcagaaagtcaaaaccatccacacccttttgcctgaaagctcagttactagatgaagttgctcaacttgcccataacaaggttttggttgcagctggagtttgtggggtaattgggcagctgtccaagcctttcactaatgtaattctgtatggcaaagagtttgatttcaagtcaacccttcaggccggaggcttcccttccacgcattcctctgcaatggtggctactgcaacaacgcttggccttgagagggggctgtcggattcgatatttggcttgactcttgtttatgcaggcattgtgatgtatgatgcccagggggtgagaagagaagctggaaaccacgcaagagtactgaacaaaatactgcctcaaattacaagggcgaacgcaatcccatcccaagatagaggaactgatgctgaagaaggtttagaaagagctggaagttttactccattgaaagaaacgattggccacactgaagttgaagtcacagccggtgctcttttgggtttcttagtaggcttggcagtgtataccacattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF212

Protein Analysis

220

Amino Acids

23.51

Weight (kDa)

8.69

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12685
fragaria_vesca	FvH4_3g13660
malus_domestica	MD05G1241400.v1.1
prunus_persica	Prupe.4G124100_v2.0.a1 Prupe.4G124100_v2.0.a1 Prupe.4G124100_v2.0.a1
pyrus_communis	pycom05g21740
rosa_chinensis	RchiOBHm_Chr5g0022891
rosa_laevigata	RLG00000032680
rosa_multiflora	Rmu_sc0000401.1_g000027 Rmu_sc0010181.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342800
rosa_rugosa	Rorug03G0240800 Rorug05G0075200 Rorug05G0075300.1
rosa_samantha	Rh3BG325700 Rh4CG087900 Rh5AG161800 Rh5BG160900 Rh5CG175500 Rh5DG162200 Rh6DG193000
rosa_wichuraiana	Rw0G002830 Rw0G020830 Rw1G000420 Rw5G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	586
AcuI	CTGAAG	3 cut(s)	275, 555, 615
AdeI	CACNNNGTG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	187, 361
AgsI	TTSAA	3 cut(s)	280, 574, 602
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	6 cut(s)	30, 149, 203, 229, 446, 554
AluI	AGCT	6 cut(s)	30, 149, 203, 229, 446, 554
Alw21I	GWGCWC	1 cut(s)	619
AoxI	GGCC	3 cut(s)	294, 352, 586
ApeKI	GCWGC	2 cut(s)	200, 226
AsuHPI	GGTGA	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	588
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	2 cut(s)	212, 238
BccI	CCATC	2 cut(s)	133, 517
BciT130I	CCWGG	1 cut(s)	428
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	2 cut(s)	201, 227
BlsI	GCNGC	2 cut(s)	202, 228
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	428
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	412, 520
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	426, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 361
Bse118I	RCCGGY	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	426, 427
BseGI	GGATG	2 cut(s)	125, 509
BseLI	CCNNNNNNNGG	2 cut(s)	187, 361
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	81, 124, 164
BseXI	GCAGC	2 cut(s)	212, 238
BshFI	GGCC	3 cut(s)	296, 354, 588
BsiHKAI	GWGCWC	1 cut(s)	619
BsiSI	CCGG	2 cut(s)	297, 612
BslI	CCNNNNNNNGG	2 cut(s)	187, 361
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	296, 354, 588
Bsp1286I	GDGCHC	2 cut(s)	58, 619
BspANI	GGCC	3 cut(s)	296, 354, 588
BspCNI	CTCAG	3 cut(s)	80, 123, 163
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	426, 427
BssNAI	GTATAC	1 cut(s)	651
Bst1107I	GTATAC	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	4 cut(s)	67, 110, 150, 631
BstF5I	GGATG	2 cut(s)	125, 509
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 176, 235, 332
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	212, 238
BstZ17I	GTATAC	1 cut(s)	651
BsuRI	GGCC	3 cut(s)	296, 354, 588
BtsCI	GGATG	2 cut(s)	125, 509
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	591, 651
Cac8I	GCNNGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	4 cut(s)	67, 110, 150, 631
DraIII	CACNNNGTG	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	58
Eco57I	CTGAAG	3 cut(s)	275, 555, 615
EcoRII	CCWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	1 cut(s)	91
FaiI	YATR	7 cut(s)	81, 89, 183, 261, 402, 420, 651
FatI	CATG	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	2 cut(s)	201, 227
FokI	GGATG	2 cut(s)	112, 496
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	201, 227
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	201, 227
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	296, 354, 588
HapII	CCGG	2 cut(s)	297, 612
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	374, 391
HpaII	CCGG	2 cut(s)	297, 612
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	285, 651
Hpy188I	TCNGA	2 cut(s)	113, 373
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	2 cut(s)	285, 651
HpyAV	CCTTC	3 cut(s)	299, 318, 533
HpyCH4V	TGCA	5 cut(s)	38, 200, 326, 341, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 176, 235, 332
HpyF3I	CTNAG	4 cut(s)	67, 110, 150, 631
Hsp92II	CATG	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	12, 18
Lsp1109I	GCAGC	2 cut(s)	212, 238
LweI	GCATC	2 cut(s)	412, 520
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	153, 604
MboII	GAAGA	2 cut(s)	450, 548
MhlI	GDGCHC	2 cut(s)	58, 619
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	5 cut(s)	13, 46, 219, 252, 486
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	111, 119, 293, 331, 354, 492, 515
Mox20I	TGGCCA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	3 cut(s)	30, 203, 229
MspI	CCGG	2 cut(s)	297, 612
MspR9I	CCNGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	4 cut(s)	27, 176, 235, 332
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	604
PasI	CCCWGGG	1 cut(s)	427
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	202, 228
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PvuII	CAGCTG	3 cut(s)	30, 203, 229
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	413
SatI	GCNGC	2 cut(s)	201, 227
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	58, 619
SetI	ASST	9 cut(s)	32, 103, 151, 192, 205, 231, 448, 544, 556
SfaNI	GCATC	2 cut(s)	412, 520
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	5 cut(s)	13, 46, 219, 252, 486
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	426
TaqI	TCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	13, 46, 219, 252, 486
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	374
TscAI	CASTG	2 cut(s)	598, 651
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	200, 226
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	598, 651
XmiI	GTMKAC	1 cut(s)	650
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.