FvH4_3g13660

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006452
Physical Location & Seq
Reverse (-)
8210100 .. 8212743
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13660.t1

Sequence Viewer

Length: 825 bp
ATGTTGCTCCAATATTGGAGCATTTCAAGTTGTGGAGCATTTCACAATTCTTGGGATGTTACTCATTCAGGAAAGCATCATAGTCTCATCTTTAACAAGCGCCTCTGCCTTGAGAAGTCAAGAAAATCAGCACCCTTTTGCCTGAAAGCTCAGTTAGTAGATGAATTGGCTCAACTTGGGCATAACAAGGTTTTGGTTGCAGCTGGAGTTTGTGGTCTGATTGGGCAGCTGTCCAAGCCTTTCACTAATGTGATTCTGTATGGCAAAGAGTTTGATTTCAAGTCAACCCTTCAGGCTGGAGGCTTCCCTTCCTCGCATTCCTCCACAATGGTGGCTACTGCAACAATGCTTGGCCTTGAAAGGGGGCTGTCGGATTCAATATTTGGCTTGAGTGTTGTTTATGCAGGCATTGTGATGTATGATGCCCAGGGGGTGAGAAGAGAAGCTGGAAATCACGCAAGAGTACTGAACAAAACACTGTCTCAAATTACAAGAGTGAACAGCATCCCATCCCAAGATAGAGGTAGACTCAATTCTCAACCCAAAACATCATCTTCGTTACAGTTGGATAGACTCAAGTCCCTTGCAAAGTCTTTTTCATCAAAAGCAACAAATGCCCCTTTACTATCAAAGTCAATCACCAAAATGAGTGAAACCACTCAGACGCAGATCATGTCGTCTGGCTTAGGAACTGATGCTGAAGGATTAGAAATAGCTGGAAGTTACACTCCACTGAAAGAAACGATTGGCCACACTGAAGTTGAAGTAGCAGCCGGTGCTCTTTTGGGTTTCTTAGTAAGCTTGGCAGTGTATATCACATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

275

Amino Acids

29.43

Weight (kDa)

9.35

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 61 - 266 5.5e-36 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 526
AcoI YGGCCR 1 cut(s) 748
AcuI CTGAAG 3 cut(s) 275, 720, 777
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 5 cut(s) 27, 280, 359, 378, 764
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 2 cut(s) 248, 329
AluBI AGCT 6 cut(s) 149, 203, 229, 446, 716, 801
AluI AGCT 6 cut(s) 149, 203, 229, 446, 716, 801
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 2 cut(s) 89, 486
AoxI GGCC 2 cut(s) 352, 748
ApeKI GCWGC 3 cut(s) 200, 226, 770
AspLEI GCGC 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 445, 631
BalI TGGCCA 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 3 cut(s) 212, 238, 782
BccI CCATC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 2 cut(s) 89, 486
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 3 cut(s) 201, 227, 771
BlsI GCNGC 3 cut(s) 202, 228, 772
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 4 cut(s) 85, 412, 513, 685
BoxI GACNNNNGTC 1 cut(s) 577
BplI GAGNNNNNCTC 2 cut(s) 513, 545
BpmI CTGGAG 2 cut(s) 225, 318
Bpu10I CCTNAGC 1 cut(s) 685
BpuEI CTTGAG 3 cut(s) 131, 409, 560
BsaJI CCNNGG 2 cut(s) 426, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse118I RCCGGY 1 cut(s) 773
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 426, 427
BseGI GGATG 3 cut(s) 61, 504, 509
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 164, 674
BseXI GCAGC 3 cut(s) 212, 238, 782
BshFI GGCC 2 cut(s) 354, 750
BsiHKAI GWGCWC 1 cut(s) 781
BsiSI CCGG 1 cut(s) 774
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 89, 486
BsmFI GGGAC 1 cut(s) 565
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 354, 750
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 1 cut(s) 669
BspANI GGCC 2 cut(s) 354, 750
BspCNI CTCAG 2 cut(s) 163, 673
BsrFI RCCGGY 1 cut(s) 773
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 2 cut(s) 426, 427
BssMI GATC 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 480, 564
Bst6I CTCTTC 1 cut(s) 433
BstAPI GCANNNNNTGC 2 cut(s) 614, 776
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 4 cut(s) 150, 660, 685, 793
BstF5I GGATG 3 cut(s) 61, 504, 509
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 2 cut(s) 89, 486
BstMBI GATC 1 cut(s) 669
BstMWI GCNNNNNNNGC 3 cut(s) 235, 614, 776
BstNI CCWGG 1 cut(s) 428
BstPAI GACNNNNGTC 1 cut(s) 577
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 212, 238, 782
BstXI CCANNNNNNTGG 1 cut(s) 331
BsuRI GGCC 2 cut(s) 354, 750
BtsCI GGATG 3 cut(s) 61, 504, 509
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 4 cut(s) 476, 731, 753, 813
Cac8I GCNNGC 1 cut(s) 406
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 773
CseI GACGC 1 cut(s) 673
Csp6I GTAC 1 cut(s) 464
CviAII CATG 1 cut(s) 673
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 4 cut(s) 150, 660, 685, 793
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco57I CTGAAG 3 cut(s) 275, 720, 777
EcoRII CCWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 676
FaiI YATR 8 cut(s) 81, 183, 261, 402, 420, 674, 813, 823
FaqI GGGAC 1 cut(s) 565
FatI CATG 1 cut(s) 672
FblI GTMKAC 1 cut(s) 526
Fnu4HI GCNGC 3 cut(s) 201, 227, 771
FokI GGATG 3 cut(s) 68, 491, 496
Fsp4HI GCNGC 3 cut(s) 201, 227, 771
GlaI GCGC 1 cut(s) 101
GluI GCNGC 3 cut(s) 201, 227, 771
GsuI CTGGAG 2 cut(s) 225, 318
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 2 cut(s) 354, 750
HapII CCGG 1 cut(s) 774
HgaI GACGC 1 cut(s) 673
HhaI GCGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 799
HinfI GANTC 4 cut(s) 253, 374, 528, 573
HpaII CCGG 1 cut(s) 774
HphI GGTGA 2 cut(s) 445, 631
Hpy166II GTNNAC 3 cut(s) 285, 499, 527
Hpy188I TCNGA 3 cut(s) 219, 373, 663
Hpy188III TCNNGA 2 cut(s) 69, 120
Hpy8I GTNNAC 3 cut(s) 285, 499, 527
HpyAV CCTTC 3 cut(s) 299, 318, 695
HpyCH4III ACNGT 2 cut(s) 480, 564
HpyCH4V TGCA 4 cut(s) 200, 341, 404, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 614, 776
HpyF3I CTNAG 4 cut(s) 150, 660, 685, 793
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 669
LmnI GCTCC 3 cut(s) 12, 18, 35
Lsp1109I GCAGC 3 cut(s) 212, 238, 782
LweI GCATC 4 cut(s) 85, 412, 513, 685
MaeIII GTNAC 3 cut(s) 58, 558, 722
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 2 cut(s) 450, 546
MhlI GDGCHC 1 cut(s) 781
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 4 cut(s) 46, 164, 486, 532
MluNI TGGCCA 1 cut(s) 750
MlyI GAGTC 2 cut(s) 522, 567
MmeI TCCRAC 2 cut(s) 351, 546
MnlI CCTC 5 cut(s) 113, 293, 322, 331, 515
Mox20I TGGCCA 1 cut(s) 750
MscI TGGCCA 1 cut(s) 750
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 4 cut(s) 248, 329, 413, 644
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 2 cut(s) 203, 229
MspI CCGG 1 cut(s) 774
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 3 cut(s) 235, 614, 776
NdeII GATC 1 cut(s) 669
NlaIII CATG 1 cut(s) 676
OliI CACNNNNGTG 2 cut(s) 248, 329
PasI CCCWGGG 1 cut(s) 427
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 253, 374
PkrI GCNGC 3 cut(s) 202, 228, 772
PleI GAGTC 2 cut(s) 522, 567
PpsI GAGTC 2 cut(s) 522, 567
PshAI GACNNNNGTC 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PvuII CAGCTG 2 cut(s) 203, 229
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 4 cut(s) 248, 329, 413, 644
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 3 cut(s) 201, 227, 771
Sau3AI GATC 1 cut(s) 669
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 2 cut(s) 522, 567
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 781
SetI ASST 8 cut(s) 151, 192, 205, 231, 448, 526, 718, 803
SfaNI GCATC 4 cut(s) 85, 412, 513, 685
SmiMI CAYNNNNRTG 4 cut(s) 248, 329, 413, 644
SmlI CTYRAG 3 cut(s) 110, 388, 575
SmoI CTYRAG 3 cut(s) 110, 388, 575
Sse9I AATT 4 cut(s) 46, 164, 486, 532
SspI AATATT 2 cut(s) 14, 381
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 480, 564
TasI AATT 4 cut(s) 46, 164, 486, 532
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 2 cut(s) 253, 374
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 4 cut(s) 483, 738, 760, 813
TseI GCWGC 3 cut(s) 200, 226, 770
TspDTI ATGAA 2 cut(s) 177, 588
TspRI CASTG 4 cut(s) 483, 738, 760, 813
XmiI GTMKAC 1 cut(s) 526
ZrmI AGTACT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.