Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006452

Physical Location & Seq

Genomic Coordinates Reverse (-)

6778956 .. 6782494

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G124100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGCTCCAGTTTTGGAGCATTTCCAGTTCCACTGCGCTTCACAATTCTTGGGCTTTCTCTTACCCCGGAAAGCACCACAACCTTGTTTTTAAAGGACCTATCTGCCTCAGAAAGCCAAAGGCCTCCTCACCCACTTGCCTCAGAGCTCAGTTGCTCGAGGAAATCACTCAACTTGCCCATAACAAGGTGCTGATTGCTGCCGGCGTTTCTGCGGCAATTGGGCAGCTCACCAAGCCTGTCACTTCTGTAATTTTGTATGGGAAAGACTTTGATTTCAAGGCAATCGTTCAGGCCGGGGGCTTCCCTTCTACCCATTCCTCTGCAGTGGTGGCTACTGCAACAACCCTTGGCCTTGAAAGGGGCCTTTCGGATTCAATATTTGGCCTTACTGTTGTTTATGCAGGTCTTGTGATGTATGACGCCCAGGGGGTGAGAAGAGAAGTTGGCAACCATGCAAAAGTACTGAACAAGACACTGCCTGAAAGTGCAAGGATGAGCTCAGTTCCCACCAAGGACAGAGGTAGAATTAACCCTCAACCTAAAACATCGTCGTCTTCGTCGTTGAAGTCGGATAGCTTTGGGTCTCTGTTGTCTGAGGAAGCAAATTCTTTCTCATCAAAACCAACAAACGGCCCTTTAGTGTCTCTCTCAGATAACAAAATTAGGCAAACTACTGAGACACAGATGCCTTCTGGCTTAGGAACTGATGCTGAGCAAGGTTTTGAAAGAGCTGGCAATCGTTCAACTCTGTTGAAAGAATCGATTGGCCACACTGAAGTTGAAGTCACAGCCGGTGCTTTGTTGGGTTTCTTAGTAGGCTTGGCTATGTACACCATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF212

Protein Analysis

282

Amino Acids

29.93

Weight (kDa)

9.32

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12685
fragaria_vesca	FvH4_3g13660
malus_domestica	MD05G1241400.v1.1
prunus_persica	Prupe.4G124100_v2.0.a1 Prupe.4G124100_v2.0.a1 Prupe.4G124100_v2.0.a1
pyrus_communis	pycom05g21740
rosa_chinensis	RchiOBHm_Chr5g0022891
rosa_laevigata	RLG00000032680
rosa_multiflora	Rmu_sc0000401.1_g000027 Rmu_sc0010181.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342800
rosa_rugosa	Rorug03G0240800 Rorug05G0075200 Rorug05G0075300.1
rosa_samantha	Rh3BG325700 Rh4CG087900 Rh5AG161800 Rh5BG160900 Rh5CG175500 Rh5DG162200 Rh6DG193000
rosa_wichuraiana	Rw0G002830 Rw0G020830 Rw1G000420 Rw5G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AciI	CCGC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	798
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	465, 833
AfiI	CCNNNNNNNGG	3 cut(s)	187, 361, 632
AgsI	TTSAA	8 cut(s)	280, 359, 378, 568, 728, 747, 757, 785
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	5 cut(s)	149, 229, 501, 579, 734
AluI	AGCT	5 cut(s)	149, 229, 501, 579, 734
Alw21I	GWGCWC	2 cut(s)	151, 503
Alw26I	GTCTC	3 cut(s)	591, 651, 674
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	7 cut(s)	123, 294, 352, 364, 385, 634, 769
ApeKI	GCWGC	2 cut(s)	200, 226
ApoI	RAATTY	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	98, 364, 635
AsuC2I	CCSGG	2 cut(s)	69, 298
AsuHPI	GGTGA	3 cut(s)	123, 223, 445
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	771
BanII	GRGCYC	2 cut(s)	151, 503
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	2 cut(s)	151, 503
BbvI	GCAGC	2 cut(s)	187, 238
BceAI	ACGGC	1 cut(s)	649
BciT130I	CCWGG	1 cut(s)	428
BcnI	CCSGG	2 cut(s)	69, 298
BcoDI	GTCTC	3 cut(s)	591, 651, 674
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	3 cut(s)	201, 216, 227
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	3 cut(s)	202, 217, 228
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	3 cut(s)	69, 298, 428
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	3 cut(s)	98, 364, 635
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	3 cut(s)	69, 298, 428
BmsI	GCATC	2 cut(s)	678, 700
BpiI	GAAGAC	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	700
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuMI	CCSGG	2 cut(s)	69, 298
Bsa29I	ATCGAT	1 cut(s)	764
BsaHI	GRCGYC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	591
BsaJI	CCNNGG	6 cut(s)	67, 297, 349, 426, 427, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 361, 632
Bse118I	RCCGGY	2 cut(s)	203, 794
Bse1I	ACTGG	2 cut(s)	10, 27
BseBI	CCWGG	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	6 cut(s)	67, 297, 349, 426, 427, 513
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	187, 361, 632
BseMII	CTCAG	8 cut(s)	124, 157, 164, 516, 588, 666, 669, 705
BseNI	ACTGG	2 cut(s)	10, 27
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	187, 238
BshFI	GGCC	7 cut(s)	125, 296, 354, 366, 387, 636, 771
BshVI	ATCGAT	1 cut(s)	764
BsiHKAI	GWGCWC	2 cut(s)	151, 503
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	4 cut(s)	69, 204, 297, 795
BslI	CCNNNNNNNGG	3 cut(s)	187, 361, 632
BsmAI	GTCTC	3 cut(s)	591, 651, 674
BsnI	GGCC	7 cut(s)	125, 296, 354, 366, 387, 636, 771
Bso31I	GGTCTC	1 cut(s)	591
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	151, 503
Bsp1407I	TGTACA	1 cut(s)	831
Bsp1720I	GCTNAGC	1 cut(s)	714
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	7 cut(s)	125, 296, 354, 366, 387, 636, 771
BspCNI	CTCAG	8 cut(s)	123, 156, 163, 515, 589, 665, 670, 706
BspDI	ATCGAT	1 cut(s)	764
BspLI	GGNNCC	1 cut(s)	365
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	591
BsrFI	RCCGGY	2 cut(s)	203, 794
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	10, 27
BssAI	RCCGGY	2 cut(s)	203, 794
BssECI	CCNNGG	6 cut(s)	67, 297, 349, 426, 427, 513
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	349, 513
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	433
BstACI	GRCGYC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	205, 736
BstF5I	GGATG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	3 cut(s)	591, 651, 674
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 332
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	3 cut(s)	67, 296, 426
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	187, 238
BstV2I	GAAGAC	1 cut(s)	549
Bsu15I	ATCGAT	1 cut(s)	764
BsuRI	GGCC	7 cut(s)	125, 296, 354, 366, 387, 636, 771
BsuTUI	ATCGAT	1 cut(s)	764
BtsCI	GGATG	1 cut(s)	501
BtsI	GCAGTG	3 cut(s)	33, 333, 476
BtsIMutI	CAGTG	4 cut(s)	33, 333, 476, 774
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	205, 736
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	203, 794
Cfr13I	GGNCC	3 cut(s)	98, 364, 635
ClaI	ATCGAT	1 cut(s)	764
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	464, 832
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	2 cut(s)	464, 832
DraI	TTTAAA	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
Ecl136II	GAGCTC	2 cut(s)	149, 501
Eco130I	CCWWGG	2 cut(s)	349, 513
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	2 cut(s)	151, 503
Eco31I	GGTCTC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	98
Eco53kI	GAGCTC	2 cut(s)	149, 501
Eco57I	CTGAAG	1 cut(s)	798
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	2 cut(s)	149, 501
EcoO109I	RGGNCCY	2 cut(s)	98, 364
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	349, 513
EcoT38I	GRGCYC	2 cut(s)	151, 503
ErhI	CCWWGG	2 cut(s)	349, 513
FaeI	CATG	1 cut(s)	458
FaiI	YATR	7 cut(s)	183, 261, 402, 420, 456, 830, 839
FatI	CATG	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	201, 216, 227
FokI	GGATG	1 cut(s)	508
FriOI	GRGCYC	2 cut(s)	151, 503
Fsp4HI	GCNGC	3 cut(s)	201, 216, 227
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	201, 216, 227
HaeIII	GGCC	7 cut(s)	125, 296, 354, 366, 387, 636, 771
HapII	CCGG	4 cut(s)	69, 204, 297, 795
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	374, 761
HpaII	CCGG	4 cut(s)	69, 204, 297, 795
HphI	GGTGA	3 cut(s)	123, 223, 445
Hpy166II	GTNNAC	1 cut(s)	834
Hpy188I	TCNGA	6 cut(s)	113, 146, 373, 574, 598, 655
Hpy8I	GTNNAC	1 cut(s)	834
Hpy99I	CGWCG	2 cut(s)	556, 565
HpyAV	CCTTC	2 cut(s)	318, 702
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	5 cut(s)	326, 341, 404, 458, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 332
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	12, 18
Lsp1109I	GCAGC	2 cut(s)	187, 238
LweI	GCATC	2 cut(s)	678, 700
MaeIII	GTNAC	2 cut(s)	241, 787
MboII	GAAGA	2 cut(s)	450, 549
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	151, 503
MlsI	TGGCCA	1 cut(s)	771
MluCI	AATT	6 cut(s)	46, 219, 252, 528, 607, 663
MluNI	TGGCCA	1 cut(s)	771
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	9 cut(s)	119, 136, 139, 152, 154, 331, 515, 546, 592
Mox20I	TGGCCA	1 cut(s)	771
MroNI	GCCGGC	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	2 cut(s)	93, 531
MslI	CAYNNNNRTG	1 cut(s)	839
Msp20I	TGGCCA	1 cut(s)	771
MspI	CCGG	4 cut(s)	69, 204, 297, 795
MspR9I	CCNGG	3 cut(s)	69, 298, 428
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	235, 332
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	2 cut(s)	69, 298
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	2 cut(s)	241, 787
PaeR7I	CTCGAG	1 cut(s)	158
PasI	CCCWGGG	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	2 cut(s)	557, 560
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	374, 761
PkrI	GCNGC	3 cut(s)	202, 217, 228
PpuMI	RGGWCCY	1 cut(s)	98
Psp124BI	GAGCTC	2 cut(s)	151, 503
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	98, 364, 635
PspPPI	RGGWCCY	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	465, 833
RsaNI	GTAC	2 cut(s)	464, 832
RseI	CAYNNNNRTG	1 cut(s)	839
SacI	GAGCTC	2 cut(s)	151, 503
SaqAI	TTAA	2 cut(s)	93, 531
SatI	GCNGC	3 cut(s)	201, 216, 227
Sau96I	GGNCC	3 cut(s)	98, 364, 635
ScaI	AGTACT	1 cut(s)	465
ScrFI	CCNGG	3 cut(s)	69, 298, 428
SduI	GDGCHC	2 cut(s)	151, 503
SfaNI	GCATC	2 cut(s)	678, 700
SfcI	CTRYAG	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	6 cut(s)	46, 219, 252, 528, 607, 663
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	1 cut(s)	381
SstI	GAGCTC	2 cut(s)	151, 503
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	3 cut(s)	67, 296, 426
StyI	CCWWGG	2 cut(s)	349, 513
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	159, 764
TasI	AATT	6 cut(s)	46, 219, 252, 528, 607, 663
TatI	WGTACW	2 cut(s)	463, 831
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	2 cut(s)	374, 761
Tru1I	TTAA	2 cut(s)	93, 531
Tru9I	TTAA	2 cut(s)	93, 531
TscAI	CASTG	4 cut(s)	40, 333, 483, 781
TseFI	GTSAC	2 cut(s)	241, 787
TseI	GCWGC	2 cut(s)	200, 226
Tsp45I	GTSAC	2 cut(s)	241, 787
TspRI	CASTG	4 cut(s)	40, 333, 483, 781
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	607
XhoI	CTCGAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.