AT3G14560

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
4889063 .. 4890215
1153 bp
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UTR
Exon/CDS
Intron
AT3G14560.1

Sequence Viewer

Length: 465 bp
ATGGCGTCTACGCAATATGGTTTTGAACATCAAGGCGGCATGGAGATTATCAACGATGAGCTTATCTTGTCGTTTTTGGAAGAAGAATCGCCCGTCGAAAATCATAGTAGCATCAACAAAGAGGAAGAAGAGAAACTAAACCGTGTGATTAGGTCGCTAGAAGTGGAGATCAACATGAGTTCTCCAACCATAGAAGCTAGGAAAATGAATATGCAACAGACGATATCCGGTCTTGAAGATGATTTTGGGTGGCTTAACGACTTTGATATTGGTATGATTTCGTTGCAAAATGATGATGAGATGATGAATTGGTGTACGGAACTTTCTTACATGGATGGTGTGGTAGATAGTGGTGTTCTTGAGATTGAAGGTGGTGATTATTATTCTCATATTAACTATGCACTCACATTTGAGGAACCAACTCTTTCTCTATGGCAAGAGAATAATGATGTAGTTATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.74

Weight (kDa)

4.05

Isoelectric Point (pI)

76.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AciI CCGC 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 316
AgsI TTSAA 3 cut(s) 26, 236, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 2 cut(s) 61, 197
AluI AGCT 2 cut(s) 61, 197
AsuHPI GGTGA 1 cut(s) 386
BccI CCATC 1 cut(s) 329
BfaI CTAG 2 cut(s) 158, 198
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 227
BseGI GGATG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 228
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 417
BssMI GATC 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 340
Csp6I GTAC 1 cut(s) 315
CviAII CATG 3 cut(s) 40, 175, 331
CviJI RGCY 3 cut(s) 61, 197, 253
CviKI_1 RGCY 3 cut(s) 61, 197, 253
CviQI GTAC 1 cut(s) 315
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco32I GATATC 1 cut(s) 225
EcoRV GATATC 1 cut(s) 225
FaeI CATG 3 cut(s) 43, 178, 334
FatI CATG 3 cut(s) 39, 174, 330
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 2 cut(s) 158, 198
GluI GCNGC 1 cut(s) 37
HapII CCGG 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 43, 178, 334
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 9, 315
Hpy188III TCNNGA 2 cut(s) 233, 359
Hpy8I GTNNAC 2 cut(s) 9, 315
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 214, 286, 401
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 43, 178, 334
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 1 cut(s) 241
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 158, 198
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 5 cut(s) 92, 95, 137, 140, 248
MluCI AATT 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 115, 406
MseI TTAA 2 cut(s) 255, 393
MspI CCGG 1 cut(s) 228
NdeII GATC 1 cut(s) 168
NlaIII CATG 3 cut(s) 43, 178, 334
NlaIV GGNNCC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 417
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 255, 393
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 168
SetI ASST 4 cut(s) 63, 155, 199, 373
SfaNI GCATC 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 1 cut(s) 307
SsiI CCGC 1 cut(s) 36
SspMI CTAG 2 cut(s) 158, 198
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 307
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 255, 393
Tru9I TTAA 2 cut(s) 255, 393
TspDTI ATGAA 2 cut(s) 221, 320
TspGWI ACGGA 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 2 cut(s) 158, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.