Rroxscaffold_1G00051510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005344
Physical Location & Seq
Reverse (-)
72176711 .. 72180164
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051510.1

Sequence Viewer

Length: 372 bp
ATGGACACTAATAATCCTCAGTTCGGCAGCAGCAACAGCGCTGACAATTTTCATCCGTTGGATGTGGGATATGCGAACGGAGGTGACTGCTCGGCATCTGGATTCGGTTGGGTTGATATGGGAATGGGGTCTTCTTCACAGGGCGATGAACCCATTGATAACTGGTACCTGAATTCTTGTGATTTTGATGAGATCGACTGCATGTCGTCGAATTTTGGAGGGCCTCAGACTGATCCCTTTGAGGAACATGGGCATCAAAATGTGTGGCAGGAAACTTGTAATACAGGGATGCTTAGAGATTCGTACATAGGGAAAACGACCATGTGGCTGGTAGGGTTGCCCAATGAACAATTATGCAAGGGGGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.46

Weight (kDa)

4.05

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 2 cut(s) 172, 211
AfaI GTAC 2 cut(s) 167, 305
AfeI AGCGCT 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 23
AhdI GACNNNNNGTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 27, 30
ApoI RAATTY 2 cut(s) 172, 211
Asp718I GGTACC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 39, 42
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 2 cut(s) 28, 31
BlsI GCNGC 2 cut(s) 29, 32
BmeRI GACNNNNNGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 3 cut(s) 104, 262, 279
BpiI GAAGAC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 167
BseGI GGATG 3 cut(s) 52, 67, 294
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 2 cut(s) 32, 239
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 39, 42
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 223
Bsp143I GATC 2 cut(s) 192, 232
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 2 cut(s) 31, 238
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 167
BssMI GATC 2 cut(s) 192, 232
BstDEI CTNAG 3 cut(s) 18, 225, 293
BstF5I GGATG 3 cut(s) 52, 67, 294
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 195, 235
BstMBI GATC 2 cut(s) 192, 232
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 39, 42
BstV2I GAAGAC 1 cut(s) 123
BstXI CCANNNNNNTGG 1 cut(s) 328
BsuRI GGCC 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 3 cut(s) 52, 67, 294
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 166, 304
CspCI CAANNNNNGTGG 2 cut(s) 245, 280
CviAII CATG 3 cut(s) 202, 248, 322
CviJI RGCY 2 cut(s) 223, 328
CviKI_1 RGCY 2 cut(s) 223, 328
CviQI GTAC 2 cut(s) 166, 304
DdeI CTNAG 3 cut(s) 18, 225, 293
DpnI GATC 2 cut(s) 194, 234
DpnII GATC 2 cut(s) 192, 232
DriI GACNNNNNGTC 1 cut(s) 202
Eam1105I GACNNNNNGTC 1 cut(s) 202
Eco47III AGCGCT 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 3 cut(s) 205, 251, 325
FaiI YATR 7 cut(s) 72, 119, 203, 249, 308, 323, 355
FatI CATG 3 cut(s) 201, 247, 321
Fnu4HI GCNGC 2 cut(s) 28, 31
FokI GGATG 3 cut(s) 39, 74, 301
Fsp4HI GCNGC 2 cut(s) 28, 31
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 28, 31
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 1 cut(s) 223
HhaI GCGC 1 cut(s) 41
Hin1II CATG 3 cut(s) 205, 251, 325
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 2 cut(s) 102, 299
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 201, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 3 cut(s) 18, 225, 293
Hsp92II CATG 3 cut(s) 205, 251, 325
HspAI GCGC 1 cut(s) 39
KpnI GGTACC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 192, 232
LpnPI CCDG 7 cut(s) 84, 125, 148, 182, 254, 270, 314
Lsp1109I GCAGC 2 cut(s) 39, 42
LweI GCATC 3 cut(s) 104, 262, 279
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 194, 234
MboI GATC 2 cut(s) 192, 232
MboII GAAGA 2 cut(s) 123, 126
MluCI AATT 4 cut(s) 46, 172, 211, 350
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 27, 74, 212, 234, 235
MslI CAYNNNNRTG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 2 cut(s) 192, 232
NlaIII CATG 3 cut(s) 205, 251, 325
NlaIV GGNNCC 1 cut(s) 167
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 1 cut(s) 205
PfeI GAWTC 2 cut(s) 102, 299
PkrI GCNGC 2 cut(s) 29, 32
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 221
RsaI GTAC 2 cut(s) 167, 305
RsaNI GTAC 2 cut(s) 166, 304
RseI CAYNNNNRTG 1 cut(s) 258
SatI GCNGC 2 cut(s) 28, 31
Sau3AI GATC 2 cut(s) 192, 232
Sau96I GGNCC 1 cut(s) 221
SetI ASST 2 cut(s) 85, 171
SfaNI GCATC 3 cut(s) 104, 262, 279
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 4 cut(s) 46, 172, 211, 350
TaqI TCGA 2 cut(s) 195, 209
TasI AATT 4 cut(s) 46, 172, 211, 350
TfiI GAWTC 2 cut(s) 102, 299
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 27, 30
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 41, 162, 360
TspGWI ACGGA 2 cut(s) 45, 93
XapI RAATTY 2 cut(s) 172, 211
XceI RCATGY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.