Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005344

Physical Location & Seq

Genomic Coordinates Forward (+)

10673221 .. 10673742

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTTCTTCATCACTACCTGAAACCTGGGCATGCATGAACATGGATGTGAGTGACTCAAACATGAGCAATGCCCTTATCATGTCCTTGTGGGAAGAAACACAAGCCGATCAAGAGCACGACGAGGAGCGGCTGCGCAGCCTAATCCGAGCTCTAGAAGTTGAACTCGATCCTACTACTAGTACAACTGATCATGGACATCATGATATGTTCATGGATGTTACTAATGATCCTCAATTCGGCAGCAGTAACAGTGCAGACAACTTTCAGCTGCCGTCGGATGTCGGATATGCGAACGGAGGCGATCGCTCGGCATCTGGATTCGGTTGGATTGATATGGAAAAGGGGTCTTCTTCACAGGGTGATGAACCCATTGATAACTCATGGTACCTGAATTGTGATTTTGATGAGGTCGATTGCATGCCGTCGAACTTTGGAGGGCCTCAGAGTACTGCTCCCTTTGAGGAACATGGGCATCAAAATGTGTGGCAGGAAGCTTGTAATACAAGGATGCTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.22

Weight (kDa)

4.05

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14560
fragaria_vesca	FvH4_3g16930 FvH4_3g16940
malus_domestica	MD03G1255500.v1.1 MD03G1255600.v1.1 MD11G1276300.v1.1
prunus_persica	Prupe.4G151500_v2.0.a1 Prupe.4G151600_v2.0.a1 Prupe.4G151600_v2.0.a1
pyrus_communis	pycom03g20220 pycom03g20230
rosa_chinensis	RchiOBHm_Chr5g0028161 RchiOBHm_Chr5g0028181
rosa_laevigata	RLG00000033072 RLG00000033073
rosa_multiflora	Rmu_sc0001045.1_g000014 Rmu_sc0001045.1_g000019
rosa_roxburghii	Rroxscaffold_1G00051510 Rroxscaffold_1G00051520
rosa_rugosa	Rorug05G0104600 Rorug05G0104600
rosa_samantha	Rh5AG197700 Rh5AG197800 Rh5BG196300 Rh5BG196400 Rh5CG216400 Rh5CG216500 Rh5DG198000 Rh5DG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	137
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	164, 224
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	184, 389, 451
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	164
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	152, 271, 497
AluI	AGCT	3 cut(s)	152, 271, 497
Alw21I	GWGCWC	2 cut(s)	120, 154
AlwI	GGATC	2 cut(s)	164, 224
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	133, 138, 243, 271
AsiSI	GCGATCGC	1 cut(s)	307
Asp718I	GGTACC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	120, 154
BbvI	GCAGC	4 cut(s)	120, 150, 255, 258
BceAI	ACGGC	2 cut(s)	259, 409
BciT130I	CCWGG	1 cut(s)	28
BclI	TGATCA	1 cut(s)	190
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	155, 180
BisI	GCNGC	5 cut(s)	131, 134, 139, 244, 272
BlsI	GCNGC	5 cut(s)	132, 135, 140, 245, 273
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	3 cut(s)	323, 484, 501
BpiI	GAAGAC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	4 cut(s)	52, 223, 286, 516
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	120, 150, 255, 258
BsgI	GTGCAG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	120, 154
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	120, 154
Bsp143I	GATC	5 cut(s)	109, 169, 190, 229, 304
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	164, 224
BspT107I	GGYRCC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	109, 169, 190, 229, 304
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	34, 422
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	52, 223, 286, 516
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	5 cut(s)	112, 172, 193, 232, 307
BstMBI	GATC	5 cut(s)	109, 169, 190, 229, 304
BstMCI	CGRYCG	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	2 cut(s)	36, 424
BstSCI	CCNGG	1 cut(s)	26
BstV1I	GCAGC	4 cut(s)	120, 150, 255, 258
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	4 cut(s)	52, 223, 286, 516
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	34, 422
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	183, 388, 450
CspCI	CAANNNNNGTGG	2 cut(s)	467, 502
CviJI	RGCY	8 cut(s)	5, 107, 133, 141, 152, 271, 442, 497
CviKI_1	RGCY	8 cut(s)	5, 107, 133, 141, 152, 271, 442, 497
CviQI	GTAC	3 cut(s)	183, 388, 450
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	5 cut(s)	111, 171, 192, 231, 306
DpnII	GATC	5 cut(s)	109, 169, 190, 229, 304
DraIII	CACNNNGTG	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	131, 134, 139, 244, 272
FokI	GGATG	3 cut(s)	59, 230, 293
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	5 cut(s)	131, 134, 139, 244, 272
FspBI	CTAG	2 cut(s)	155, 180
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	5 cut(s)	131, 134, 139, 244, 272
HaeIII	GGCC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	2 cut(s)	56, 321
HphI	GGTGA	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	149, 280, 287, 447
Hpy188III	TCNNGA	4 cut(s)	113, 155, 203, 318
Hpy99I	CGWCG	3 cut(s)	125, 280, 430
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	36, 257, 420
HpyF3I	CTNAG	1 cut(s)	444
HspAI	GCGC	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	109, 169, 190, 229, 304
LmnI	GCTCC	2 cut(s)	127, 460
LpnPI	CCDG	7 cut(s)	13, 33, 40, 303, 344, 404, 476
Lsp1109I	GCAGC	4 cut(s)	120, 150, 255, 258
LweI	GCATC	3 cut(s)	323, 484, 501
MaeI	CTAG	2 cut(s)	155, 180
MaeIII	GTNAC	3 cut(s)	53, 220, 248
MalI	GATC	5 cut(s)	111, 171, 192, 231, 306
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	5 cut(s)	109, 169, 190, 229, 304
MboII	GAAGA	3 cut(s)	107, 342, 345
MhlI	GDGCHC	2 cut(s)	120, 154
MluCI	AATT	2 cut(s)	236, 394
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	3 cut(s)	258, 265, 308
MnlI	CCTC	7 cut(s)	118, 243, 293, 403, 431, 453, 457
Mph1103I	ATGCAT	1 cut(s)	38
MslI	CAYNNNNRTG	3 cut(s)	41, 47, 480
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
NdeII	GATC	5 cut(s)	109, 169, 190, 229, 304
NlaIV	GGNNCC	1 cut(s)	389
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	53
NsbI	TGCGCA	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	38
NspI	RCATGY	2 cut(s)	36, 424
PaeI	GCATGC	2 cut(s)	36, 424
PagI	TCATGA	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	132, 135, 140, 245, 273
Ple19I	CGATCG	1 cut(s)	307
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	440
PvuI	CGATCG	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	271
RgaI	GCGATCGC	1 cut(s)	307
RsaI	GTAC	3 cut(s)	184, 389, 451
RsaNI	GTAC	3 cut(s)	183, 388, 450
RseI	CAYNNNNRTG	3 cut(s)	41, 47, 480
SacI	GAGCTC	1 cut(s)	154
SatI	GCNGC	5 cut(s)	131, 134, 139, 244, 272
Sau3AI	GATC	5 cut(s)	109, 169, 190, 229, 304
Sau96I	GGNCC	1 cut(s)	440
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	120, 154
SetI	ASST	7 cut(s)	22, 29, 154, 273, 393, 414, 499
SfaAI	GCGATCGC	1 cut(s)	307
SfaNI	GCATC	3 cut(s)	323, 484, 501
SgfI	GCGATCGC	1 cut(s)	307
SmiMI	CAYNNNNRTG	3 cut(s)	41, 47, 480
SpeI	ACTAGT	1 cut(s)	179
SphI	GCATGC	2 cut(s)	36, 424
Sse9I	AATT	2 cut(s)	236, 394
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	2 cut(s)	155, 180
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	168, 414, 428
TasI	AATT	2 cut(s)	236, 394
TatI	WGTACW	2 cut(s)	182, 449
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	4 cut(s)	133, 138, 243, 271
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	53, 202, 381
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	2 cut(s)	36, 424
XspI	CTAG	2 cut(s)	155, 180
ZrmI	AGTACT	1 cut(s)	451
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.