Prupe.4G151500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0005344
Physical Location & Seq
Forward (+)
8656820 .. 8657652
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G151500.1

Sequence Viewer

Length: 546 bp
ATGGCTTCTTTGCTAGCTGAAAACTGGTCATGCATGAACAACAACATGGACATGAATGATCACTTTCCTGGAGCAGCTGGAGCTGGAACCTCATCAAACATGAGCAATGCCCTGCTCATGTCCTTGTTGGAAGAAACACAAGGTGATCAGGATCATGACGAAGAGCGATTGCGCAGCCTAATCCGTGCTCTAGAAGTAGAACTGGACCCTACTACTAGTGAAGATCATGAAATTTTCATGGAAAATCCTCATCAATTTGGTGGCATTAGTCAAGAGGATTTTCAGCCATTGGATGTGGGATATGTGAGCGGTGGTGATTTCCCTGGAACAGATGCAGCTGGGTTCGGTTGGATTGATATGGAAATAGGGTCTTCTTCTCAGGAGGGTACTGGTGAATCAGTTGACTGGTACATGGATTCTTGCCTTGATGATGAGATCGATTGCTCGTCTAGTAATTTTGGAGGGTCTACGACCACTCCCTTTGAGGAAAATGGGTATCAGAATTTGTGGCAGGAAACATATATTAATACAAGGATGAATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.95

Weight (kDa)

4.05

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 309
AccI GTMKAC 1 cut(s) 467
AciI CCGC 1 cut(s) 309
AclWI GGATC 1 cut(s) 159
AcsI RAATTY 2 cut(s) 231, 502
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 2 cut(s) 388, 410
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 2 cut(s) 67, 322
AluBI AGCT 4 cut(s) 17, 77, 83, 338
AluI AGCT 4 cut(s) 17, 77, 83, 338
Alw21I GWGCWC 1 cut(s) 190
AlwI GGATC 1 cut(s) 159
ApeKI GCWGC 3 cut(s) 74, 174, 335
ApoI RAATTY 2 cut(s) 231, 502
AseI ATTAAT 1 cut(s) 525
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 3 cut(s) 155, 326, 404
AsuNHI GCTAGC 1 cut(s) 13
AvaII GGWCC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 3 cut(s) 86, 186, 347
BciT130I CCWGG 2 cut(s) 69, 324
BclI TGATCA 2 cut(s) 58, 145
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 4 cut(s) 14, 191, 216, 450
BisI GCNGC 3 cut(s) 75, 175, 336
BlsI GCNGC 3 cut(s) 76, 176, 337
Bme1390I CCNGG 2 cut(s) 69, 324
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 88, 207
BmrFI CCNGG 2 cut(s) 69, 324
BmsI GCATC 1 cut(s) 322
BmtI GCTAGC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 90, 99
Bsa29I ATCGAT 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bse1I ACTGG 4 cut(s) 29, 207, 394, 410
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 2 cut(s) 69, 324
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 2 cut(s) 298, 540
BseJI GATNNNNATC 1 cut(s) 150
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 4 cut(s) 29, 207, 394, 410
BseXI GCAGC 3 cut(s) 86, 186, 347
BseYI CCCAGC 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 5 cut(s) 58, 145, 151, 223, 435
BspACI CCGC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 438
BspHI TCATGA 2 cut(s) 154, 226
BspLI GGNNCC 2 cut(s) 88, 207
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 4 cut(s) 29, 207, 394, 410
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 5 cut(s) 58, 145, 151, 223, 435
Bst2UI CCWGG 2 cut(s) 69, 324
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 298, 540
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 61, 148, 154, 226, 438
BstMBI GATC 5 cut(s) 58, 145, 151, 223, 435
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 69, 324
BstSCI CCNGG 2 cut(s) 67, 322
BstV1I GCAGC 3 cut(s) 86, 186, 347
BstV2I GAAGAC 1 cut(s) 363
Bsu15I ATCGAT 1 cut(s) 438
BsuTUI ATCGAT 1 cut(s) 438
BtsCI GGATG 2 cut(s) 298, 540
Cac8I GCNNGC 1 cut(s) 15
CciI TCATGA 2 cut(s) 154, 226
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 2 cut(s) 387, 409
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviJI RGCY 7 cut(s) 5, 17, 77, 83, 177, 286, 338
CviKI_1 RGCY 7 cut(s) 5, 17, 77, 83, 177, 286, 338
CviQI GTAC 2 cut(s) 387, 409
DdeI CTNAG 1 cut(s) 378
DpnI GATC 5 cut(s) 60, 147, 153, 225, 437
DpnII GATC 5 cut(s) 58, 145, 151, 223, 435
DraIII CACNNNGTG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 67, 322
EcoT22I ATGCAT 1 cut(s) 35
FbaI TGATCA 2 cut(s) 58, 145
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 3 cut(s) 75, 175, 336
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 75, 175, 336
FspBI CTAG 4 cut(s) 14, 191, 216, 450
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 1 cut(s) 173
GluI GCNGC 3 cut(s) 75, 175, 336
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 2 cut(s) 90, 99
HhaI GCGC 1 cut(s) 174
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 2 cut(s) 395, 416
HphI GGTGA 3 cut(s) 155, 326, 404
Hpy166II GTNNAC 2 cut(s) 403, 468
Hpy188I TCNGA 1 cut(s) 501
Hpy188III TCNNGA 6 cut(s) 149, 155, 191, 227, 272, 380
Hpy8I GTNNAC 2 cut(s) 403, 468
HpyCH4V TGCA 2 cut(s) 33, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 378
HspAI GCGC 1 cut(s) 172
Ksp22I TGATCA 2 cut(s) 58, 145
Kzo9I GATC 5 cut(s) 58, 145, 151, 223, 435
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 71, 80
Lsp1109I GCAGC 3 cut(s) 86, 186, 347
LweI GCATC 1 cut(s) 322
MaeI CTAG 4 cut(s) 14, 191, 216, 450
MalI GATC 5 cut(s) 60, 147, 153, 225, 437
MbiI CCGCTC 1 cut(s) 309
MboI GATC 5 cut(s) 58, 145, 151, 223, 435
MboII GAAGA 5 cut(s) 143, 173, 233, 363, 366
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 4 cut(s) 231, 254, 454, 502
MmeI TCCRAC 2 cut(s) 108, 329
MnlI CCTC 6 cut(s) 100, 258, 268, 376, 455, 478
Mph1103I ATGCAT 1 cut(s) 35
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 77, 338
MspR9I CCNGG 2 cut(s) 69, 324
MvaI CCWGG 2 cut(s) 69, 324
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 5 cut(s) 58, 145, 151, 223, 435
NheI GCTAGC 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 88, 207
NsbI TGCGCA 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 35
PagI TCATGA 2 cut(s) 154, 226
PciSI GCTCTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 395, 416
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 3 cut(s) 76, 176, 337
PshBI ATTAAT 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 67, 322
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 2 cut(s) 67, 322
PspN4I GGNNCC 2 cut(s) 88, 207
PspPI GGNCC 1 cut(s) 205
PvuII CAGCTG 2 cut(s) 77, 338
RsaI GTAC 2 cut(s) 388, 410
RsaNI GTAC 2 cut(s) 387, 409
RseI CAYNNNNRTG 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 3 cut(s) 75, 175, 336
Sau3AI GATC 5 cut(s) 58, 145, 151, 223, 435
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 69, 324
SduI GDGCHC 1 cut(s) 190
SetI ASST 6 cut(s) 19, 79, 85, 92, 145, 340
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 4 cut(s) 231, 254, 454, 502
SsiI CCGC 1 cut(s) 309
SspMI CTAG 4 cut(s) 14, 191, 216, 450
StyD4I CCNGG 2 cut(s) 67, 322
TaqI TCGA 1 cut(s) 438
TasI AATT 4 cut(s) 231, 254, 454, 502
TfiI GAWTC 2 cut(s) 395, 416
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TseI GCWGC 3 cut(s) 74, 174, 335
TspDTI ATGAA 4 cut(s) 50, 68, 226, 243
TspGWI ACGGA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 205
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 2 cut(s) 231, 502
XbaI TCTAGA 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 467
XspI CTAG 4 cut(s) 14, 191, 216, 450
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.