Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005344

Physical Location & Seq

Genomic Coordinates Reverse (-)

9214594 .. 9217739

Gene Structure 3146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0104600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCGTTGGAGGAGGATCCACACGACGGTGCTATGGAAATCGAGGAGTCTGACATTCCGAAGCTCCAGACTGACTTTGAACTCGTCTCTTACACTCTCTTCTACGATGAATTTCTAGCCTTTGAATTGTGTTGTGCAGACACAGATTTGCTGCAAAGAACATGGCCTATTGTGGAATCCGCCTTAGAAGAGTATGGCCTTTCGTGCACTCTGGATCTGGTGAAGCGTTATATGAGAGTGTCCACAACCAAAATGGCTTCAGATCCAGATTTTATATTCACAGCTATTGATATTCTTGAACTTTTGTCAAGAAGTGTTCCGGCAGATTGGGCAATAAAGATTCTAGATTGCAGTTGCCAACACGACATCATTAAGATTGGGAATCAAGAAGACGGTCTTTGCAGGATATTTGGGATCAATAAGGAGCAATTTCTTGCACGGAGAGCACTTCTCATGGGTGGTGTCATGAAGGGACTAGTTGATGTGACGGATTGTGGTATTTTTCTCAAGGGAAACACTATTGCTGTCCTGGGTTCACTTCATGGATTAAAGATGGTAAGGAGGATTGTGGAAGACTGTATAGCTCATGATGTGCCTCCTGCACCCCGTGTCCAGAGGATGAGAAAGAAGAGCCAAGCGAAGAAGGCTAGGAGGATCAAAAGGACCAGTGAAGTGACAATGAATCTTCAAGCTTTGCGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.48

Weight (kDa)

5.49

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	50 - 116	1.3e-13	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	122 - 211	2.7e-13	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14560
fragaria_vesca	FvH4_3g16930 FvH4_3g16940
malus_domestica	MD03G1255500.v1.1 MD03G1255600.v1.1 MD11G1276300.v1.1
prunus_persica	Prupe.4G151500_v2.0.a1 Prupe.4G151600_v2.0.a1 Prupe.4G151600_v2.0.a1
pyrus_communis	pycom03g20220 pycom03g20230
rosa_chinensis	RchiOBHm_Chr5g0028161 RchiOBHm_Chr5g0028181
rosa_laevigata	RLG00000033072 RLG00000033073
rosa_multiflora	Rmu_sc0001045.1_g000014 Rmu_sc0001045.1_g000019
rosa_roxburghii	Rroxscaffold_1G00051510 Rroxscaffold_1G00051520
rosa_rugosa	Rorug05G0104600 Rorug05G0104600
rosa_samantha	Rh5AG197700 Rh5AG197800 Rh5BG196300 Rh5BG196400 Rh5CG216400 Rh5CG216500 Rh5DG198000 Rh5DG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	6 cut(s)	11, 24, 222, 257, 422, 662
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	608
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	80, 125, 299, 689
AhlI	ACTAGT	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	528
AleI	CACNNNNGTG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	64, 284, 584, 692
AluI	AGCT	4 cut(s)	64, 284, 584, 692
Alw21I	GWGCWC	2 cut(s)	209, 448
Alw26I	GTCTC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	205
AlwI	GGATC	6 cut(s)	11, 24, 222, 257, 422, 662
AoxI	GGCC	2 cut(s)	164, 196
ApaLI	GTGCAC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	396, 579
Bbv12I	GWGCWC	2 cut(s)	209, 448
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	91
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	4 cut(s)	116, 344, 476, 648
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	396, 579
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpmI	CTGGAG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	2 cut(s)	26, 59
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	138
BsgI	GTGCAG	2 cut(s)	156, 585
BshFI	GGCC	2 cut(s)	166, 198
BsiHKAI	GWGCWC	2 cut(s)	209, 448
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	166, 198
Bsp1286I	GDGCHC	2 cut(s)	209, 448
Bsp143I	GATC	5 cut(s)	16, 214, 262, 414, 654
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	166, 198
BspHI	TCATGA	2 cut(s)	465, 586
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	6 cut(s)	11, 24, 222, 257, 422, 662
BspQI	GCTCTTC	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	5 cut(s)	16, 214, 262, 414, 654
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	3 cut(s)	29, 395, 578
Bst6I	CTCTTC	3 cut(s)	104, 183, 623
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	624
BstKTI	GATC	5 cut(s)	19, 217, 265, 417, 657
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	5 cut(s)	16, 214, 262, 414, 654
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 329, 443, 644
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	2 cut(s)	396, 579
BstX2I	RGATCY	3 cut(s)	16, 214, 262
BstYI	RGATCY	3 cut(s)	16, 214, 262
BsuRI	GGCC	2 cut(s)	166, 198
BtsCI	GGATG	1 cut(s)	624
BtsIMutI	CAGTG	1 cut(s)	673
CciI	TCATGA	2 cut(s)	465, 586
Cfr13I	GGNCC	1 cut(s)	663
CviAII	CATG	5 cut(s)	162, 454, 466, 542, 587
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	5 cut(s)	18, 216, 264, 416, 656
DpnII	GATC	5 cut(s)	16, 214, 262, 414, 654
DraIII	CACNNNGTG	1 cut(s)	608
Eam1104I	CTCTTC	3 cut(s)	104, 183, 623
EarI	CTCTTC	3 cut(s)	104, 183, 623
EciI	GGCGGA	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	663
Eco57I	CTGAAG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	5 cut(s)	165, 457, 469, 545, 590
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	5 cut(s)	161, 453, 465, 541, 586
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	631
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	4 cut(s)	116, 344, 476, 648
GluI	GCNGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	166, 198
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	5 cut(s)	165, 457, 469, 545, 590
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	5 cut(s)	47, 176, 340, 382, 682
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	207, 243, 536
Hpy188I	TCNGA	3 cut(s)	52, 60, 262
Hpy8I	GTNNAC	3 cut(s)	207, 243, 536
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	463, 637
HpyCH4III	ACNGT	3 cut(s)	29, 395, 578
HpyCH4V	TGCA	7 cut(s)	137, 154, 207, 351, 402, 437, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 329, 443, 644
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	165, 457, 469, 545, 590
Kzo9I	GATC	5 cut(s)	16, 214, 262, 414, 654
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	69, 424
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	4 cut(s)	116, 344, 476, 648
MaeIII	GTNAC	2 cut(s)	484, 673
MalI	GATC	5 cut(s)	18, 216, 264, 416, 656
MboI	GATC	5 cut(s)	16, 214, 262, 414, 654
MboII	GAAGA	7 cut(s)	91, 200, 401, 584, 640, 652, 677
MflI	RGATCY	3 cut(s)	16, 214, 262
MhlI	GDGCHC	2 cut(s)	209, 448
MluCI	AATT	3 cut(s)	110, 125, 428
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	4, 7, 37, 555, 606, 609, 645
MseI	TTAA	2 cut(s)	372, 548
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	4 cut(s)	204, 329, 443, 644
NdeII	GATC	5 cut(s)	16, 214, 262, 414, 654
NlaIII	CATG	5 cut(s)	165, 457, 469, 545, 590
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	484, 673
OliI	CACNNNNGTG	1 cut(s)	27
PagI	TCATGA	2 cut(s)	465, 586
PciSI	GCTCTTC	1 cut(s)	623
PfeI	GAWTC	4 cut(s)	176, 340, 382, 682
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	663
PsuI	RGATCY	3 cut(s)	16, 214, 262
RseI	CAYNNNNRTG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	2 cut(s)	372, 548
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	5 cut(s)	16, 214, 262, 414, 654
Sau96I	GGNCC	1 cut(s)	663
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	209, 448
SetI	ASST	4 cut(s)	66, 286, 586, 694
SinI	GGWCC	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	3 cut(s)	110, 125, 428
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	4 cut(s)	116, 344, 476, 648
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	29, 395, 578
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	110, 125, 428
TfiI	GAWTC	4 cut(s)	176, 340, 382, 682
Tru1I	TTAA	2 cut(s)	372, 548
Tru9I	TTAA	2 cut(s)	372, 548
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	2 cut(s)	484, 673
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	484, 673
TspDTI	ATGAA	4 cut(s)	123, 482, 530, 695
TspGWI	ACGGA	2 cut(s)	454, 503
TspRI	CASTG	1 cut(s)	673
VneI	GTGCAC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	663
XapI	RAATTY	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	4 cut(s)	116, 344, 476, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.