Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005344

Physical Location & Seq

Genomic Coordinates Forward (+)

8660009 .. 8661355

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G151600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGTTCTAGCACCGCACTGATCAGAAACTATGCAAGCATGAACGACCATGATCATGATGATGATTTGGGAGTTGATGAACTCATGGGATCCGACGGCGCCATTCTCAAGTCCTTATTGGAAGAACTTCAAGAGGAAGATCGAGATGAGGAGAGGTTGAATATTGTGATTCAATCTCTAGAGGCAGAATTAGTCAACATTCCAAGCACAATGGACTCCGAATCGACCGTCCAAGATGTGGAAGATGGTAACTTGTCGAACGTTGTAGGAGGCTTGGACGGTCAGGATTGCTCAGTGTCATCATCAGTTGATTTTGATCAGGTGGGATGGTTTGATGTGGATCAGGTGGCTTGCTCACCAAGCGATGACATGAATTGGTATATGGATTCTTCTTGTTGTGAGTATGAGATGGATTGTCCAGCGGCTGATTCTGAATTGGTTGATGACTATTATTGTCATGTTAGTTATGGAGTTGGGTTAGAGGAGCTTGCGTATAGCTCTTTATGGCAGGAAAATGCATATGATTCAATCATGTATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.97

Weight (kDa)

4.05

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14560
fragaria_vesca	FvH4_3g16930 FvH4_3g16940
malus_domestica	MD03G1255500.v1.1 MD03G1255600.v1.1 MD11G1276300.v1.1
prunus_persica	Prupe.4G151500_v2.0.a1 Prupe.4G151600_v2.0.a1 Prupe.4G151600_v2.0.a1
pyrus_communis	pycom03g20220 pycom03g20230
rosa_chinensis	RchiOBHm_Chr5g0028161 RchiOBHm_Chr5g0028181
rosa_laevigata	RLG00000033072 RLG00000033073
rosa_multiflora	Rmu_sc0001045.1_g000014 Rmu_sc0001045.1_g000019
rosa_roxburghii	Rroxscaffold_1G00051510 Rroxscaffold_1G00051520
rosa_rugosa	Rorug05G0104600 Rorug05G0104600
rosa_samantha	Rh5AG197700 Rh5AG197800 Rh5BG196300 Rh5BG196400 Rh5CG216400 Rh5CG216500 Rh5DG198000 Rh5DG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	238
AciI	CCGC	2 cut(s)	15, 422
AclI	AACGTT	1 cut(s)	261
AclWI	GGATC	3 cut(s)	84, 97, 348
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	131, 160, 173, 528
AluBI	AGCT	2 cut(s)	487, 498
AluI	AGCT	2 cut(s)	487, 498
AlwI	GGATC	3 cut(s)	84, 97, 348
AlwNI	CAGNNNCTG	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	98
BccI	CCATC	3 cut(s)	239, 321, 403
BceAI	ACGGC	1 cut(s)	112
BclI	TGATCA	3 cut(s)	21, 52, 316
BfaI	CTAG	2 cut(s)	9, 179
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	91, 100
BpuEI	CTTGAG	1 cut(s)	92
BsaBI	GATNNNNATC	2 cut(s)	315, 339
BsaHI	GRCGYC	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse8I	GATNNNNATC	2 cut(s)	315, 339
BseGI	GGATG	1 cut(s)	332
BseJI	GATNNNNATC	2 cut(s)	315, 339
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	164, 497
Bsh1285I	CGRYCG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	238
Bsp143I	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
BspACI	CCGC	2 cut(s)	15, 422
BspCNI	CTCAG	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	91, 100
BspPI	GGATC	3 cut(s)	84, 97, 348
BspT107I	GGYRCC	1 cut(s)	98
BssMI	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
BssNI	GRCGYC	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	229, 281
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	3 cut(s)	37, 352, 489
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	6 cut(s)	24, 55, 92, 142, 319, 343
BstMBI	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	17, 300
Cac8I	GCNNGC	3 cut(s)	37, 352, 489
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	1 cut(s)	101
CviAII	CATG	7 cut(s)	40, 50, 56, 85, 370, 458, 532
CviJI	RGCY	5 cut(s)	273, 350, 425, 487, 498
CviKI_1	RGCY	5 cut(s)	273, 350, 425, 487, 498
DdeI	CTNAG	1 cut(s)	292
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	6 cut(s)	23, 54, 91, 141, 318, 342
DpnII	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
EcoT22I	ATGCAT	1 cut(s)	520
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
FaeI	CATG	7 cut(s)	43, 53, 59, 88, 373, 461, 535
FatI	CATG	7 cut(s)	39, 49, 55, 84, 369, 457, 531
FauNDI	CATATG	1 cut(s)	520
FbaI	TGATCA	3 cut(s)	21, 52, 316
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	2 cut(s)	9, 179
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	102
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	7 cut(s)	43, 53, 59, 88, 373, 461, 535
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	6 cut(s)	169, 215, 221, 386, 428, 524
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	4 cut(s)	26, 94, 220, 433
Hpy188III	TCNNGA	5 cut(s)	56, 131, 143, 179, 284
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	229, 281
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	35, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	7 cut(s)	43, 53, 59, 88, 373, 461, 535
HspAI	GCGC	1 cut(s)	99
KasI	GGCGCC	1 cut(s)	98
Ksp22I	TGATCA	3 cut(s)	21, 52, 316
Kzo9I	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	5 cut(s)	269, 305, 329, 432, 494
MaeI	CTAG	2 cut(s)	9, 179
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	6 cut(s)	23, 54, 91, 141, 318, 342
MboI	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
MboII	GAAGA	4 cut(s)	134, 149, 254, 381
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	3 cut(s)	188, 373, 434
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	6 cut(s)	127, 142, 147, 175, 263, 475
Mph1103I	ATGCAT	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	54, 60
MspA1I	CMGCKG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	360
NarI	GGCGCC	1 cut(s)	99
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
NlaIII	CATG	7 cut(s)	43, 53, 59, 88, 373, 461, 535
NlaIV	GGNNCC	2 cut(s)	91, 100
NsiI	ATGCAT	1 cut(s)	520
PagI	TCATGA	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	5 cut(s)	169, 221, 386, 428, 524
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	209
PluTI	GGCGCC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	91, 100
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	89
RseI	CAYNNNNRTG	2 cut(s)	54, 60
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	6 cut(s)	21, 52, 89, 139, 316, 340
SchI	GAGTC	1 cut(s)	209
SetI	ASST	6 cut(s)	158, 264, 324, 348, 489, 500
SfoI	GGCGCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	54, 60
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	188, 373, 434
SsiI	CCGC	2 cut(s)	15, 422
SspDI	GGCGCC	1 cut(s)	98
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	2 cut(s)	9, 179
TaaI	ACNGT	2 cut(s)	229, 281
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	142, 224, 257
TasI	AATT	3 cut(s)	188, 373, 434
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	5 cut(s)	169, 221, 386, 428, 524
TscAI	CASTG	2 cut(s)	24, 300
TspDTI	ATGAA	3 cut(s)	56, 93, 386
TspRI	CASTG	2 cut(s)	24, 300
Van91I	CCANNNNNTGG	1 cut(s)	238
XbaI	TCTAGA	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	2 cut(s)	9, 179
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.