RchiOBHm_Chr5g0028161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005344
Physical Location & Seq
Forward (+)
22004747 .. 22005349
603 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30765

Sequence Viewer

Length: 504 bp
ATGGCTTCTTCACTACCTGAAAGCTGGCCATGCATCAACATGGATGTGAACGAGTCTAACATGAGCAATGACCTAATCATGTCCTTGTGGGAAGAAACACAAGCCGATCAAGAGCACGACGAGGAGCGGCTGAGCAGCCTAATCCGAGCTCTAGAAGTGGAGCTCGATCCTACTAGTACAACTGACGGACATCATGAAATGTTCATGGACACTAATAATCCTCAGTTCGGCAGCAGCAACAGCGCTGACAATTTTCATCCGTTGGATGTGGGATATGCGAACGGAGGTGACTGCTCGGCATCTGGATTCGGTTGCGTTGATATGGAAATGGGGTCTTCTTCACAGGGCGATGAACCCATTGATAACTGGTACCTGAATTCTTGTGATTTTGATGAGATCGACTGCATGTCGTCGAATTTTGGAGGGCCTCAGACTGATCCCTTTGAGGAACATGGGCATCAAAATGTGTGGCAGGAAACTTGTAATACAAGGATGCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.59

Weight (kDa)

4.05

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 1 cut(s) 127
AclWI GGATC 2 cut(s) 161, 431
AcoI YGGCCR 1 cut(s) 26
AcsI RAATTY 2 cut(s) 376, 415
AfaI GTAC 2 cut(s) 178, 371
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 227
AhdI GACNNNNNGTC 1 cut(s) 406
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 3 cut(s) 24, 149, 163
AluI AGCT 3 cut(s) 24, 149, 163
Alw21I GWGCWC 3 cut(s) 117, 151, 165
AlwI GGATC 2 cut(s) 161, 431
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 2 cut(s) 26, 425
ApeKI GCWGC 3 cut(s) 135, 231, 234
ApoI RAATTY 2 cut(s) 376, 415
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 299
BalI TGGCCA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 2 cut(s) 151, 165
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 3 cut(s) 117, 151, 165
BbvI GCAGC 3 cut(s) 147, 243, 246
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 152, 174
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 4 cut(s) 128, 136, 232, 235
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 4 cut(s) 129, 137, 233, 236
BmeRI GACNNNNNGTC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 371
BmsI GCATC 4 cut(s) 42, 308, 466, 483
BpiI GAAGAC 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 73
BseGI GGATG 4 cut(s) 49, 256, 271, 498
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 122, 236, 443
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 147, 243, 246
BshFI GGCC 2 cut(s) 28, 427
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 3 cut(s) 117, 151, 165
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 2 cut(s) 28, 427
Bsp1286I GDGCHC 3 cut(s) 117, 151, 165
Bsp143I GATC 4 cut(s) 106, 166, 396, 436
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 28, 427
BspCNI CTCAG 3 cut(s) 123, 235, 442
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 2 cut(s) 161, 431
BspT107I GGYRCC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 371
BssMI GATC 4 cut(s) 106, 166, 396, 436
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 131, 222, 429
BstF5I GGATG 4 cut(s) 49, 256, 271, 498
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 109, 169, 399, 439
BstMBI GATC 4 cut(s) 106, 166, 396, 436
BstMWI GCNNNNNNNGC 2 cut(s) 30, 240
BstNSI RCATGY 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 147, 243, 246
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 28, 427
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 4 cut(s) 49, 256, 271, 498
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 177, 370
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 8 cut(s) 30, 40, 61, 79, 194, 205, 406, 452
CviJI RGCY 9 cut(s) 5, 24, 28, 104, 130, 138, 149, 163, 427
CviKI_1 RGCY 9 cut(s) 5, 24, 28, 104, 130, 138, 149, 163, 427
CviQI GTAC 2 cut(s) 177, 370
DdeI CTNAG 3 cut(s) 131, 222, 429
DpnI GATC 4 cut(s) 108, 168, 398, 438
DpnII GATC 4 cut(s) 106, 166, 396, 436
DriI GACNNNNNGTC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 406
Ecl136II GAGCTC 2 cut(s) 149, 163
Eco24I GRGCYC 2 cut(s) 151, 165
Eco47III AGCGCT 1 cut(s) 244
Eco53kI GAGCTC 2 cut(s) 149, 163
EcoICRI GAGCTC 2 cut(s) 149, 163
EcoO109I RGGNCCY 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 35
EcoT38I GRGCYC 2 cut(s) 151, 165
FaeI CATG 8 cut(s) 33, 43, 64, 82, 197, 208, 409, 455
FatI CATG 8 cut(s) 29, 39, 60, 78, 193, 204, 405, 451
Fnu4HI GCNGC 4 cut(s) 128, 136, 232, 235
FokI GGATG 3 cut(s) 56, 243, 278
FriOI GRGCYC 2 cut(s) 151, 165
Fsp4HI GCNGC 4 cut(s) 128, 136, 232, 235
FspBI CTAG 2 cut(s) 152, 174
GlaI GCGC 1 cut(s) 244
GluI GCNGC 4 cut(s) 128, 136, 232, 235
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 28, 427
HhaI GCGC 1 cut(s) 245
Hin1II CATG 8 cut(s) 33, 43, 64, 82, 197, 208, 409, 455
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 53, 306
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 146, 432
Hpy188III TCNNGA 4 cut(s) 110, 152, 194, 303
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 122, 415
HpyCH4V TGCA 2 cut(s) 33, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 240
HpyF3I CTNAG 3 cut(s) 131, 222, 429
Hsp92II CATG 8 cut(s) 33, 43, 64, 82, 197, 208, 409, 455
HspAI GCGC 1 cut(s) 243
KpnI GGTACC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 106, 166, 396, 436
LmnI GCTCC 2 cut(s) 124, 160
LpnPI CCDG 7 cut(s) 10, 30, 288, 329, 352, 386, 458
Lsp1109I GCAGC 3 cut(s) 147, 243, 246
LweI GCATC 4 cut(s) 42, 308, 466, 483
MaeI CTAG 2 cut(s) 152, 174
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 108, 168, 398, 438
MbiI CCGCTC 1 cut(s) 127
MboI GATC 4 cut(s) 106, 166, 396, 436
MboII GAAGA 3 cut(s) 104, 327, 330
MhlI GDGCHC 3 cut(s) 117, 151, 165
MlsI TGGCCA 1 cut(s) 28
MluCI AATT 3 cut(s) 250, 376, 415
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 115, 231, 278, 416, 438, 439
Mox20I TGGCCA 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 35
MscI TGGCCA 1 cut(s) 28
MslI CAYNNNNRTG 3 cut(s) 38, 44, 462
Msp20I TGGCCA 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 30, 240
NdeII GATC 4 cut(s) 106, 166, 396, 436
NlaIII CATG 8 cut(s) 33, 43, 64, 82, 197, 208, 409, 455
NlaIV GGNNCC 1 cut(s) 371
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 35
NspI RCATGY 1 cut(s) 409
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 4 cut(s) 129, 137, 233, 236
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 2 cut(s) 151, 165
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 425
RsaI GTAC 2 cut(s) 178, 371
RsaNI GTAC 2 cut(s) 177, 370
RseI CAYNNNNRTG 3 cut(s) 38, 44, 462
SacI GAGCTC 2 cut(s) 151, 165
SatI GCNGC 4 cut(s) 128, 136, 232, 235
Sau3AI GATC 4 cut(s) 106, 166, 396, 436
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 3 cut(s) 117, 151, 165
SetI ASST 7 cut(s) 19, 26, 75, 151, 165, 289, 375
SfaNI GCATC 4 cut(s) 42, 308, 466, 483
SmiMI CAYNNNNRTG 3 cut(s) 38, 44, 462
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 3 cut(s) 250, 376, 415
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 152, 174
SstI GAGCTC 2 cut(s) 151, 165
TaqI TCGA 3 cut(s) 165, 399, 413
TasI AATT 3 cut(s) 250, 376, 415
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 306
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 3 cut(s) 135, 231, 234
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 193, 210, 245, 366
TspGWI ACGGA 3 cut(s) 201, 249, 297
XapI RAATTY 2 cut(s) 376, 415
XbaI TCTAGA 1 cut(s) 151
XceI RCATGY 1 cut(s) 409
XspI CTAG 2 cut(s) 152, 174
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.