Rh5CG216400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005344
Physical Location & Seq
Forward (+)
22015543 .. 22016362
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG216400.1

Sequence Viewer

Length: 495 bp
ATGGCTTCTTCACTACCTGAAAGCTGGCCATGCATCAACATGGATGGGAACGAGTCTAACATGAGCAATGACCTAATCATGTCCTTGTGGGAAGAAACACAAGCCGATCAAGAGCACGACGAGGAGCGGCTGAGCAGCCTAATCCGAGCTCTAGAAGTGGAGCTCGATCCTACTAGTACAACTGACGGACATCATGAAATGTTCATGGACACTAATAATCCTCAGTTCGGCAGCAGCAACAGCGCTGACAATTTTCATCCGTTGGATGTGGGATATGCGAACGGAGGTGACTGCTCGGCATCTGGATTCGGTTGCGTTGATATGGAAATGGGGTCTTCTTCACAGGGCGATGAACCCATTGATAACTGGTACCTGAATTCTTGTGATTTTGATGAGATCGACTCCAATTTTGGAGGGCCTCAGACTGATCCCTTTGAGGAACATGGGCATCAAAATGTGTGGCAGGAAACTTGTAATACAAGGATGCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.23

Weight (kDa)

4.05

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 1 cut(s) 127
AclWI GGATC 2 cut(s) 161, 422
AcoI YGGCCR 1 cut(s) 26
AcsI RAATTY 1 cut(s) 376
AfaI GTAC 2 cut(s) 178, 371
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 227
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 3 cut(s) 24, 149, 163
AluI AGCT 3 cut(s) 24, 149, 163
Alw21I GWGCWC 3 cut(s) 117, 151, 165
AlwI GGATC 2 cut(s) 161, 422
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 2 cut(s) 26, 416
ApeKI GCWGC 3 cut(s) 135, 231, 234
ApoI RAATTY 1 cut(s) 376
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 299
BalI TGGCCA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 2 cut(s) 151, 165
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 3 cut(s) 117, 151, 165
BbvI GCAGC 3 cut(s) 147, 243, 246
BccI CCATC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 152, 174
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 4 cut(s) 128, 136, 232, 235
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 4 cut(s) 129, 137, 233, 236
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 371
BmsI GCATC 4 cut(s) 42, 308, 457, 474
BpiI GAAGAC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 386, 418
Bpu1102I GCTNAGC 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 73
BseGI GGATG 4 cut(s) 49, 256, 271, 489
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 122, 236, 434
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 147, 243, 246
BshFI GGCC 2 cut(s) 28, 418
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 3 cut(s) 117, 151, 165
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 2 cut(s) 28, 418
Bsp1286I GDGCHC 3 cut(s) 117, 151, 165
Bsp143I GATC 4 cut(s) 106, 166, 396, 427
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 28, 418
BspCNI CTCAG 3 cut(s) 123, 235, 433
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 2 cut(s) 161, 422
BspT107I GGYRCC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 371
BssMI GATC 4 cut(s) 106, 166, 396, 427
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 131, 222, 420
BstF5I GGATG 4 cut(s) 49, 256, 271, 489
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 109, 169, 399, 430
BstMBI GATC 4 cut(s) 106, 166, 396, 427
BstMWI GCNNNNNNNGC 2 cut(s) 30, 240
BstV1I GCAGC 3 cut(s) 147, 243, 246
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 28, 418
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 4 cut(s) 49, 256, 271, 489
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 2 cut(s) 177, 370
CspCI CAANNNNNGTGG 2 cut(s) 440, 475
CviAII CATG 7 cut(s) 30, 40, 61, 79, 194, 205, 443
CviJI RGCY 9 cut(s) 5, 24, 28, 104, 130, 138, 149, 163, 418
CviKI_1 RGCY 9 cut(s) 5, 24, 28, 104, 130, 138, 149, 163, 418
CviQI GTAC 2 cut(s) 177, 370
DdeI CTNAG 3 cut(s) 131, 222, 420
DpnI GATC 4 cut(s) 108, 168, 398, 429
DpnII GATC 4 cut(s) 106, 166, 396, 427
EaeI YGGCCR 1 cut(s) 26
Ecl136II GAGCTC 2 cut(s) 149, 163
Eco24I GRGCYC 2 cut(s) 151, 165
Eco47III AGCGCT 1 cut(s) 244
Eco53kI GAGCTC 2 cut(s) 149, 163
EcoICRI GAGCTC 2 cut(s) 149, 163
EcoO109I RGGNCCY 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 35
EcoT38I GRGCYC 2 cut(s) 151, 165
FaeI CATG 7 cut(s) 33, 43, 64, 82, 197, 208, 446
FatI CATG 7 cut(s) 29, 39, 60, 78, 193, 204, 442
Fnu4HI GCNGC 4 cut(s) 128, 136, 232, 235
FokI GGATG 3 cut(s) 56, 243, 278
FriOI GRGCYC 2 cut(s) 151, 165
Fsp4HI GCNGC 4 cut(s) 128, 136, 232, 235
FspBI CTAG 2 cut(s) 152, 174
GlaI GCGC 1 cut(s) 244
GluI GCNGC 4 cut(s) 128, 136, 232, 235
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 28, 418
HhaI GCGC 1 cut(s) 245
Hin1II CATG 7 cut(s) 33, 43, 64, 82, 197, 208, 446
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 3 cut(s) 53, 306, 401
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 146, 423
Hpy188III TCNNGA 4 cut(s) 110, 152, 194, 303
Hpy99I CGWCG 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 240
HpyF3I CTNAG 3 cut(s) 131, 222, 420
Hsp92II CATG 7 cut(s) 33, 43, 64, 82, 197, 208, 446
HspAI GCGC 1 cut(s) 243
KpnI GGTACC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 106, 166, 396, 427
LmnI GCTCC 2 cut(s) 124, 160
LpnPI CCDG 7 cut(s) 10, 30, 288, 329, 352, 386, 449
Lsp1109I GCAGC 3 cut(s) 147, 243, 246
LweI GCATC 4 cut(s) 42, 308, 457, 474
MaeI CTAG 2 cut(s) 152, 174
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 108, 168, 398, 429
MbiI CCGCTC 1 cut(s) 127
MboI GATC 4 cut(s) 106, 166, 396, 427
MboII GAAGA 3 cut(s) 104, 327, 330
MhlI GDGCHC 3 cut(s) 117, 151, 165
MlsI TGGCCA 1 cut(s) 28
MluCI AATT 3 cut(s) 250, 376, 406
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 2 cut(s) 62, 395
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 115, 231, 278, 407, 429, 430
Mox20I TGGCCA 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 35
MscI TGGCCA 1 cut(s) 28
MslI CAYNNNNRTG 2 cut(s) 38, 453
Msp20I TGGCCA 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 30, 240
NdeII GATC 4 cut(s) 106, 166, 396, 427
NlaIII CATG 7 cut(s) 33, 43, 64, 82, 197, 208, 446
NlaIV GGNNCC 1 cut(s) 371
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 35
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 4 cut(s) 129, 137, 233, 236
PleI GAGTC 2 cut(s) 61, 395
PpsI GAGTC 2 cut(s) 61, 395
Psp124BI GAGCTC 2 cut(s) 151, 165
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 416
RsaI GTAC 2 cut(s) 178, 371
RsaNI GTAC 2 cut(s) 177, 370
RseI CAYNNNNRTG 2 cut(s) 38, 453
SacI GAGCTC 2 cut(s) 151, 165
SatI GCNGC 4 cut(s) 128, 136, 232, 235
Sau3AI GATC 4 cut(s) 106, 166, 396, 427
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 2 cut(s) 62, 395
SduI GDGCHC 3 cut(s) 117, 151, 165
SetI ASST 7 cut(s) 19, 26, 75, 151, 165, 289, 375
SfaNI GCATC 4 cut(s) 42, 308, 457, 474
SmiMI CAYNNNNRTG 2 cut(s) 38, 453
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 3 cut(s) 250, 376, 406
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 152, 174
SstI GAGCTC 2 cut(s) 151, 165
TaqI TCGA 2 cut(s) 165, 399
TasI AATT 3 cut(s) 250, 376, 406
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 306
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 3 cut(s) 135, 231, 234
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 193, 210, 245, 366
TspGWI ACGGA 3 cut(s) 201, 249, 297
XapI RAATTY 1 cut(s) 376
XbaI TCTAGA 1 cut(s) 151
XspI CTAG 2 cut(s) 152, 174
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.