Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005344

Physical Location & Seq

Genomic Coordinates Reverse (-)

39338864 .. 39339433

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1276300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTCTTTGGTACCTGAAAACTGGTCATACACCAATATGGGTATTAACGATAATTTCTCGGAATCAGTTGGAGTTGCATCATCAAACATGAGCAATGCCCTACTGATGTCCTTGTTGGAAGAAACACAAGGTGGCGATCAAGACCACGACGAGGAACGGTTAAGCAGCCTGATCCGAGCTCTAGAGGTAGAGCTCGAGTCTACGACGAGTGAAGGTGATGAAATTTTCATGGATAATCTTCATGAATTTGGTGGCATTAACCAAGAGGATCATTTTCAGCCGTTCGATGTTGAATATGTGGATGGTAGGGACTTCCAGGCAACAAACGCACCTGGGTTCGGTTGGATGGATATGGAAAAAGGGTCTTCTTCTTCACAGGGTACTGAGGAATCAGTTGATTGGTACATGGATGATTCTTGTTTTGATGACATCGATTGCATGTCTAGTTCTGGAGGGTCTCAGTACAATGGCAGCATTATTCCTACAACTAATACTCCTTGTGAGGAAGATGGATACCATAATCTGTGGCAGGAAACATATGTTAAACAAGGATGCATGTTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.08

Weight (kDa)

4.05

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14560
fragaria_vesca	FvH4_3g16930 FvH4_3g16940
malus_domestica	MD03G1255500.v1.1 MD03G1255600.v1.1 MD11G1276300.v1.1
prunus_persica	Prupe.4G151500_v2.0.a1 Prupe.4G151600_v2.0.a1 Prupe.4G151600_v2.0.a1
pyrus_communis	pycom03g20220 pycom03g20230
rosa_chinensis	RchiOBHm_Chr5g0028161 RchiOBHm_Chr5g0028181
rosa_laevigata	RLG00000033072 RLG00000033073
rosa_multiflora	Rmu_sc0001045.1_g000014 Rmu_sc0001045.1_g000019
rosa_roxburghii	Rroxscaffold_1G00051510 Rroxscaffold_1G00051520
rosa_rugosa	Rorug05G0104600 Rorug05G0104600
rosa_samantha	Rh5AG197700 Rh5AG197800 Rh5BG196300 Rh5BG196400 Rh5CG216400 Rh5CG216500 Rh5DG198000 Rh5DG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	169, 279
AcsI	RAATTY	2 cut(s)	225, 248
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	4 cut(s)	15, 385, 407, 467
AfiI	CCNNNNNNNGG	2 cut(s)	154, 341
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	2 cut(s)	318, 334
AluBI	AGCT	2 cut(s)	182, 196
AluI	AGCT	2 cut(s)	182, 196
Alw21I	GWGCWC	2 cut(s)	184, 198
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	169, 279
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	168, 474
ApoI	RAATTY	2 cut(s)	225, 248
Asp718I	GGTACC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	184, 198
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	184, 198
BbvI	GCAGC	2 cut(s)	180, 486
BccI	CCATC	3 cut(s)	299, 343, 506
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	320, 336
BciVI	GTATCC	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	185, 447
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	2 cut(s)	169, 475
BlsI	GCNGC	2 cut(s)	170, 476
Bme1390I	CCNGG	2 cut(s)	320, 336
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	320, 336
BmsI	GCATC	2 cut(s)	89, 545
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 341
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	320, 336
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	4 cut(s)	310, 354, 418, 560
BseLI	CCNNNNNNNGG	2 cut(s)	154, 341
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	378, 476
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	180, 486
BshNI	GGYRCC	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	435
BsiHKAI	GWGCWC	2 cut(s)	184, 198
BsiHKCI	CYCGRG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	154, 341
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	465
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	184, 198
Bsp143I	GATC	3 cut(s)	139, 174, 271
BspCNI	CTCAG	2 cut(s)	379, 475
BspDI	ATCGAT	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	169, 279
BspT107I	GGYRCC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	3 cut(s)	139, 174, 271
Bst2UI	CCWGG	2 cut(s)	320, 336
Bst4CI	ACNGT	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	387, 462
BstF5I	GGATG	4 cut(s)	310, 354, 418, 560
BstKTI	GATC	3 cut(s)	142, 177, 274
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	3 cut(s)	139, 174, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	2 cut(s)	320, 336
BstNSI	RCATGY	2 cut(s)	445, 562
BstSCI	CCNGG	2 cut(s)	318, 334
BstV1I	GCAGC	2 cut(s)	180, 486
BstV2I	GAAGAC	1 cut(s)	360
Bsu15I	ATCGAT	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	509
BsuTUI	ATCGAT	1 cut(s)	435
BtsCI	GGATG	4 cut(s)	310, 354, 418, 560
CciI	TCATGA	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	4 cut(s)	14, 384, 406, 466
CviAII	CATG	6 cut(s)	91, 232, 245, 409, 442, 559
CviJI	RGCY	5 cut(s)	5, 171, 182, 196, 283
CviKI_1	RGCY	5 cut(s)	5, 171, 182, 196, 283
CviQI	GTAC	4 cut(s)	14, 384, 406, 466
DdeI	CTNAG	2 cut(s)	387, 462
DpnI	GATC	3 cut(s)	141, 176, 273
DpnII	GATC	3 cut(s)	139, 174, 271
DraIII	CACNNNGTG	1 cut(s)	134
Ecl136II	GAGCTC	2 cut(s)	182, 196
Eco24I	GRGCYC	2 cut(s)	184, 198
Eco31I	GGTCTC	1 cut(s)	465
Eco53kI	GAGCTC	2 cut(s)	182, 196
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	2 cut(s)	182, 196
EcoRII	CCWGG	2 cut(s)	318, 334
EcoT22I	ATGCAT	1 cut(s)	560
EcoT38I	GRGCYC	2 cut(s)	184, 198
FaeI	CATG	6 cut(s)	94, 235, 248, 412, 445, 562
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	6 cut(s)	90, 231, 244, 408, 441, 558
FauNDI	CATATG	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	169, 475
FokI	GGATG	3 cut(s)	317, 361, 425
FriOI	GRGCYC	2 cut(s)	184, 198
Fsp4HI	GCNGC	2 cut(s)	169, 475
FspBI	CTAG	2 cut(s)	185, 447
GluI	GCNGC	2 cut(s)	169, 475
GsuI	CTGGAG	1 cut(s)	474
Hin1II	CATG	6 cut(s)	94, 235, 248, 412, 445, 562
HinfI	GANTC	4 cut(s)	65, 200, 392, 416
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	64, 179
Hpy188III	TCNNGA	4 cut(s)	143, 185, 245, 453
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	155, 211
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	80, 441, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	2 cut(s)	387, 462
Hsp92II	CATG	6 cut(s)	94, 235, 248, 412, 445, 562
KpnI	GGTACC	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	139, 174, 271
Lsp1109I	GCAGC	2 cut(s)	180, 486
LweI	GCATC	2 cut(s)	89, 545
MaeI	CTAG	2 cut(s)	185, 447
MalI	GATC	3 cut(s)	141, 176, 273
MboI	GATC	3 cut(s)	139, 174, 271
MboII	GAAGA	6 cut(s)	134, 233, 360, 363, 366, 521
MhlI	GDGCHC	2 cut(s)	184, 198
MluCI	AATT	4 cut(s)	55, 225, 248, 565
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	3 cut(s)	52, 99, 326
MnlI	CCTC	6 cut(s)	148, 181, 262, 382, 449, 499
Mph1103I	ATGCAT	1 cut(s)	560
MseI	TTAA	5 cut(s)	48, 164, 261, 546, 564
MslI	CAYNNNNRTG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	320, 336
MvaI	CCWGG	2 cut(s)	320, 336
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	3 cut(s)	139, 174, 271
NlaIII	CATG	6 cut(s)	94, 235, 248, 412, 445, 562
NlaIV	GGNNCC	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	2 cut(s)	445, 562
PaeR7I	CTCGAG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	65, 392, 416
PkrI	GCNGC	2 cut(s)	170, 476
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp124BI	GAGCTC	2 cut(s)	184, 198
Psp6I	CCWGG	2 cut(s)	318, 334
PspGI	CCWGG	2 cut(s)	318, 334
PspN4I	GGNNCC	1 cut(s)	15
PspXI	VCTCGAGB	1 cut(s)	197
RsaI	GTAC	4 cut(s)	15, 385, 407, 467
RsaNI	GTAC	4 cut(s)	14, 384, 406, 466
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	184, 198
SaqAI	TTAA	5 cut(s)	48, 164, 261, 546, 564
SatI	GCNGC	2 cut(s)	169, 475
Sau3AI	GATC	3 cut(s)	139, 174, 271
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	320, 336
SduI	GDGCHC	2 cut(s)	184, 198
SetI	ASST	7 cut(s)	19, 136, 184, 192, 198, 220, 337
SfaNI	GCATC	2 cut(s)	89, 545
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	55, 225, 248, 565
SspMI	CTAG	2 cut(s)	185, 447
SstI	GAGCTC	2 cut(s)	184, 198
StyD4I	CCNGG	2 cut(s)	318, 334
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	198, 288, 435
TasI	AATT	4 cut(s)	55, 225, 248, 565
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	3 cut(s)	65, 392, 416
Tru1I	TTAA	5 cut(s)	48, 164, 261, 546, 564
Tru9I	TTAA	5 cut(s)	48, 164, 261, 546, 564
TseI	GCWGC	2 cut(s)	168, 474
TspDTI	ATGAA	4 cut(s)	220, 233, 237, 261
XapI	RAATTY	2 cut(s)	225, 248
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	2 cut(s)	445, 562
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	2 cut(s)	185, 447
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.