FvH4_3g16940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005344
Physical Location & Seq
Forward (+)
10676933 .. 10677898
966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16940.t1

Sequence Viewer

Length: 477 bp
ATGAAGAGCGATGAAGATGAGTTGGGAGTTGAAGCCTTCCAGACCAACGACGCCATTCTCATGTCCTTGCTAGAAGAGTTTCAAGAAGAAGATGGTGACGACGAGGAAAGAGTAAATAGCCTGATCCAGTCTCTGGAAGAAGAGATAAGTAGTCCAAGTGCAACAATGGCCAGCAATGGTTCGGGTTTTATCAACTCCGAATTGACCATCGATGATTTCCAAGACGGCAACGATTGCTCTGGTTCATTAGCTGATAGCAGTGAGATGGGATGGTTTGATATGGAGCAGGTCCCTTGCTCACCAAGTGATGATATGAACTGGTATATGGATTCTTGTGAATACGAGATGGATTGTCTCAATGACTCTGGAATTTGGGTTGGTGATTATTCTCATATCTGCTATGGAGCTGGCTTAGAAGATAATGGATACAGCTCAATATGGCAGGAAACTGCATATGATTCAATCATGTACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.65

Weight (kDa)

4.05

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccB7I CCANNNNNTGG 1 cut(s) 133
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 3 cut(s) 32, 83, 462
AluBI AGCT 3 cut(s) 251, 407, 432
AluI AGCT 3 cut(s) 251, 407, 432
Alw26I GTCTC 2 cut(s) 135, 359
AlwI GGATC 1 cut(s) 118
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 107, 291, 392
AvaII GGWCC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 170
BccI CCATC 5 cut(s) 86, 215, 259, 264, 340
BceAI ACGGC 1 cut(s) 241
BciVI GTATCC 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 135, 359
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 277
BfuI GTATCC 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 127, 323
Bse3DI GCAATG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 210
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 127, 323
BshFI GGCC 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 210
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 135, 359
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 123
BspANI GGCC 1 cut(s) 170
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 2 cut(s) 127, 323
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 69, 135
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 172, 409
BstDEI CTNAG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 275
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 2 cut(s) 135, 359
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 2 cut(s) 167, 234
Bsu15I ATCGAT 1 cut(s) 210
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 172, 409
CaiI CAGNNNCTG 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 289
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 469
CviAII CATG 2 cut(s) 61, 466
CviJI RGCY 7 cut(s) 35, 120, 170, 251, 407, 411, 432
CviKI_1 RGCY 7 cut(s) 35, 120, 170, 251, 407, 411, 432
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 1 cut(s) 412
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 69, 135
EarI CTCTTC 2 cut(s) 69, 135
Eco47I GGWCC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 289
FaeI CATG 2 cut(s) 64, 469
FaqI GGGAC 1 cut(s) 275
FatI CATG 2 cut(s) 60, 465
FauNDI CATATG 1 cut(s) 454
FokI GGATG 1 cut(s) 282
FspBI CTAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 170
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 2 cut(s) 64, 469
HinfI GANTC 3 cut(s) 329, 362, 458
HphI GGTGA 3 cut(s) 107, 291, 392
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 4 cut(s) 40, 83, 134, 366
Hpy99I CGWCG 2 cut(s) 53, 104
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 161, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 234
HpyF3I CTNAG 1 cut(s) 412
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 2 cut(s) 64, 469
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 283, 404
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 8 cut(s) 16, 26, 86, 98, 101, 149, 152, 428
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 2 cut(s) 200, 369
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 1 cut(s) 97
Mox20I TGGCCA 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 78
MscI TGGCCA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 167, 234
NdeI CATATG 1 cut(s) 454
NdeII GATC 1 cut(s) 123
NlaIII CATG 2 cut(s) 64, 469
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 329, 458
PflMI CCANNNNNTGG 1 cut(s) 133
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 59
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 356
SetI ASST 4 cut(s) 253, 291, 409, 434
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 2 cut(s) 200, 369
SspMI CTAG 1 cut(s) 71
TaqI TCGA 1 cut(s) 210
TasI AATT 2 cut(s) 200, 369
TfiI GAWTC 2 cut(s) 329, 458
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 17, 27, 234, 329
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.