Rroxscaffold_1G00051520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005344
Physical Location & Seq
Reverse (-)
72180193 .. 72180366
174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051520.1

Sequence Viewer

Length: 174 bp
ATGGCTTCTTCACTACCTGAAAGCTGGCCATGCATCAACATGGATGTGAACGAGTCTAACATGAGCAATGACCTAATCATGTCCTTGTGGGAAGAAACACAAGCCGATCAAGAGCACGACGAGGAGCGGCTGAGCAGCCTAATCCGAGCTCTAGAAGTGGAGCTCGATACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.55

Weight (kDa)

4.05

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 26
AluBI AGCT 3 cut(s) 24, 149, 163
AluI AGCT 3 cut(s) 24, 149, 163
Alw21I GWGCWC 3 cut(s) 117, 151, 165
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 28
BanII GRGCYC 2 cut(s) 151, 165
Bbv12I GWGCWC 3 cut(s) 117, 151, 165
BbvI GCAGC 1 cut(s) 147
BfaI CTAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 128, 136
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 2 cut(s) 129, 137
BmsI GCATC 1 cut(s) 42
Bpu1102I GCTNAGC 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 73
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 28
BsiHKAI GWGCWC 3 cut(s) 117, 151, 165
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 3 cut(s) 117, 151, 165
Bsp143I GATC 1 cut(s) 106
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 73
BssMI GATC 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSNI TACGTA 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 26
CviAII CATG 4 cut(s) 30, 40, 61, 79
CviJI RGCY 8 cut(s) 5, 24, 28, 104, 130, 138, 149, 163
CviKI_1 RGCY 8 cut(s) 5, 24, 28, 104, 130, 138, 149, 163
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 26
Ecl136II GAGCTC 2 cut(s) 149, 163
Eco105I TACGTA 1 cut(s) 171
Eco24I GRGCYC 2 cut(s) 151, 165
Eco53kI GAGCTC 2 cut(s) 149, 163
EcoICRI GAGCTC 2 cut(s) 149, 163
EcoT22I ATGCAT 1 cut(s) 35
EcoT38I GRGCYC 2 cut(s) 151, 165
FaeI CATG 4 cut(s) 33, 43, 64, 82
FaiI YATR 4 cut(s) 31, 41, 62, 80
FatI CATG 4 cut(s) 29, 39, 60, 78
Fnu4HI GCNGC 2 cut(s) 128, 136
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 2 cut(s) 151, 165
Fsp4HI GCNGC 2 cut(s) 128, 136
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 128, 136
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 4 cut(s) 33, 43, 64, 82
HinfI GANTC 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 110, 152
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 4 cut(s) 33, 43, 64, 82
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 2 cut(s) 124, 160
LpnPI CCDG 2 cut(s) 10, 30
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 170
MalI GATC 1 cut(s) 108
MbiI CCGCTC 1 cut(s) 127
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 3 cut(s) 117, 151, 165
MlsI TGGCCA 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 1 cut(s) 115
Mox20I TGGCCA 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 35
MscI TGGCCA 1 cut(s) 28
MslI CAYNNNNRTG 2 cut(s) 38, 44
Msp20I TGGCCA 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 30
NdeII GATC 1 cut(s) 106
NlaIII CATG 4 cut(s) 33, 43, 64, 82
NsiI ATGCAT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 129, 137
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 171
Psp124BI GAGCTC 2 cut(s) 151, 165
RseI CAYNNNNRTG 2 cut(s) 38, 44
SacI GAGCTC 2 cut(s) 151, 165
SatI GCNGC 2 cut(s) 128, 136
Sau3AI GATC 1 cut(s) 106
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 3 cut(s) 117, 151, 165
SetI ASST 6 cut(s) 19, 26, 75, 151, 165, 173
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 38, 44
SnaBI TACGTA 1 cut(s) 171
SsiI CCGC 1 cut(s) 127
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 2 cut(s) 151, 165
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 165
TauI GCSGC 1 cut(s) 130
TseI GCWGC 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 151
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.