Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005344

Physical Location & Seq

Genomic Coordinates Reverse (-)

34293499 .. 34294071

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1255600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTTCTTTGGCACCTGAAAACTGGGCATACGCCAATATGGGTGTTAACCATAATTTCTCGGAATCATCAGTTGGAGTTGCATCATCAAACGTGAGCAATGCCCTACTCATGTCCTTGTTGGAAGAAACACAAGGTGGCGATCAAGATCACGACGAGGAACGGTTAAGCAGCCTGATCCGAGCTCTAGAGGTAGAGCTCGAGCCTACAACGAGTGAAGGTGATGGAATTTTCATGGATAATCTTCATGAATTTGGTAGCATTAACCAAGAGGATCATTTTCAGCTGTTCGATGTTGGATCTGTGGACGGTAGGGATTTCCAGGAAACAAACGCACCTGGGTTCGGTTGGATGGATATGGAAATAGGGTTTTCTTCTTCACAGGGTACTGATGAATCAGTTGATTGGTACATGGATGATTCTTGTTTTGGTGACATCGATCGCATGTCTAGTTCTGGAGGCTCTCAGTACAATGGCAGCATTACTACAACTATTACTCCTTCTGAGGAAGATGGATACCAAAAGCTGTGGCAGGAAACGTATGTTAATACAAGGATGCATATATATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.09

Weight (kDa)

4.05

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14560
fragaria_vesca	FvH4_3g16930 FvH4_3g16940
malus_domestica	MD03G1255500.v1.1 MD03G1255600.v1.1 MD11G1276300.v1.1
prunus_persica	Prupe.4G151500_v2.0.a1 Prupe.4G151600_v2.0.a1 Prupe.4G151600_v2.0.a1
pyrus_communis	pycom03g20220 pycom03g20230
rosa_chinensis	RchiOBHm_Chr5g0028161 RchiOBHm_Chr5g0028181
rosa_laevigata	RLG00000033072 RLG00000033073
rosa_multiflora	Rmu_sc0001045.1_g000014 Rmu_sc0001045.1_g000019
rosa_roxburghii	Rroxscaffold_1G00051510 Rroxscaffold_1G00051520
rosa_rugosa	Rorug05G0104600 Rorug05G0104600
rosa_samantha	Rh5AG197700 Rh5AG197800 Rh5BG196300 Rh5BG196400 Rh5CG216400 Rh5CG216500 Rh5DG198000 Rh5DG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AclWI	GGATC	3 cut(s)	172, 282, 307
AcsI	RAATTY	2 cut(s)	228, 251
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	388, 410, 470
AfiI	CCNNNNNNNGG	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	321, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	4 cut(s)	185, 199, 286, 526
AluI	AGCT	4 cut(s)	185, 199, 286, 526
Alw21I	GWGCWC	2 cut(s)	187, 201
AlwI	GGATC	3 cut(s)	172, 282, 307
Ama87I	CYCGRG	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	171, 477
ApoI	RAATTY	2 cut(s)	228, 251
AsuHPI	GGTGA	2 cut(s)	233, 443
AvaI	CYCGRG	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	187, 201
Bbv12I	GWGCWC	2 cut(s)	187, 201
BbvI	GCAGC	2 cut(s)	183, 489
BccI	CCATC	3 cut(s)	218, 346, 506
BciT130I	CCWGG	2 cut(s)	323, 339
BciVI	GTATCC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	188, 450
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	2 cut(s)	172, 478
BlsI	GCNGC	2 cut(s)	173, 479
Bme1390I	CCNGG	2 cut(s)	323, 339
BmeT110I	CYCGRG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	323, 339
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	92, 546
BmuI	ACTGGG	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	477
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	323, 339
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	3 cut(s)	357, 421, 561
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	479, 495
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	183, 489
Bsh1285I	CGRYCG	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	187, 201
BsiHKCI	CYCGRG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	187, 201
Bsp143I	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
BspCNI	CTCAG	2 cut(s)	478, 496
BspDI	ATCGAT	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	172, 282, 307
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
Bst2UI	CCWGG	2 cut(s)	323, 339
Bst4CI	ACNGT	2 cut(s)	165, 311
BstDEI	CTNAG	2 cut(s)	465, 504
BstF5I	GGATG	3 cut(s)	357, 421, 561
BstKTI	GATC	6 cut(s)	145, 151, 180, 277, 302, 442
BstMBI	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	323, 339
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	321, 337
BstV1I	GCAGC	2 cut(s)	183, 489
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	509
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	357, 421, 561
CciI	TCATGA	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	387, 409, 469
CspCI	CAANNNNNGTGG	2 cut(s)	509, 544
CviAII	CATG	5 cut(s)	112, 235, 248, 412, 445
CviJI	RGCY	8 cut(s)	5, 174, 185, 199, 205, 286, 462, 526
CviKI_1	RGCY	8 cut(s)	5, 174, 185, 199, 205, 286, 462, 526
CviQI	GTAC	3 cut(s)	387, 409, 469
DdeI	CTNAG	2 cut(s)	465, 504
DpnI	GATC	6 cut(s)	144, 150, 179, 276, 301, 441
DpnII	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
DraIII	CACNNNGTG	1 cut(s)	137
Ecl136II	GAGCTC	2 cut(s)	185, 199
Eco24I	GRGCYC	2 cut(s)	187, 201
Eco53kI	GAGCTC	2 cut(s)	185, 199
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	2 cut(s)	185, 199
EcoRII	CCWGG	2 cut(s)	321, 337
EcoT22I	ATGCAT	1 cut(s)	561
EcoT38I	GRGCYC	2 cut(s)	187, 201
FaeI	CATG	5 cut(s)	115, 238, 251, 415, 448
FatI	CATG	5 cut(s)	111, 234, 247, 411, 444
Fnu4HI	GCNGC	2 cut(s)	172, 478
FokI	GGATG	3 cut(s)	364, 428, 568
FriOI	GRGCYC	2 cut(s)	187, 201
Fsp4HI	GCNGC	2 cut(s)	172, 478
FspBI	CTAG	2 cut(s)	188, 450
GluI	GCNGC	2 cut(s)	172, 478
GsuI	CTGGAG	1 cut(s)	477
Hin1II	CATG	5 cut(s)	115, 238, 251, 415, 448
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	65, 395, 419
HpaI	GTTAAC	1 cut(s)	49
HphI	GGTGA	2 cut(s)	233, 443
Hpy166II	GTNNAC	2 cut(s)	49, 307
Hpy188I	TCNGA	3 cut(s)	64, 182, 505
Hpy188III	TCNNGA	5 cut(s)	146, 152, 188, 248, 456
Hpy8I	GTNNAC	2 cut(s)	49, 307
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	212, 510
HpyCH4III	ACNGT	2 cut(s)	165, 311
HpyCH4IV	ACGT	2 cut(s)	93, 539
HpyCH4V	TGCA	2 cut(s)	83, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	465, 504
HpySE526I	ACGT	2 cut(s)	93, 539
Hsp92II	CATG	5 cut(s)	115, 238, 251, 415, 448
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
Lsp1109I	GCAGC	2 cut(s)	183, 489
LweI	GCATC	2 cut(s)	92, 546
MaeI	CTAG	2 cut(s)	188, 450
MaeII	ACGT	2 cut(s)	93, 539
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	6 cut(s)	144, 150, 179, 276, 301, 441
MboI	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
MboII	GAAGA	5 cut(s)	137, 236, 366, 369, 521
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	187, 201
MluCI	AATT	4 cut(s)	55, 228, 251, 568
MmeI	TCCRAC	4 cut(s)	55, 102, 277, 329
MnlI	CCTC	5 cut(s)	151, 184, 265, 452, 499
Mph1103I	ATGCAT	1 cut(s)	561
MseI	TTAA	4 cut(s)	48, 167, 264, 546
MspA1I	CMGCKG	1 cut(s)	286
MspR9I	CCNGG	2 cut(s)	323, 339
MvaI	CCWGG	2 cut(s)	323, 339
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
NlaIII	CATG	5 cut(s)	115, 238, 251, 415, 448
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	431
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	65, 395, 419
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	173, 479
Ple19I	CGATCG	1 cut(s)	442
Psp124BI	GAGCTC	2 cut(s)	187, 201
Psp6I	CCWGG	2 cut(s)	321, 337
PspGI	CCWGG	2 cut(s)	321, 337
PspN4I	GGNNCC	1 cut(s)	15
PspXI	VCTCGAGB	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	299
PvuI	CGATCG	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	3 cut(s)	388, 410, 470
RsaNI	GTAC	3 cut(s)	387, 409, 469
SacI	GAGCTC	2 cut(s)	187, 201
SaqAI	TTAA	4 cut(s)	48, 167, 264, 546
SatI	GCNGC	2 cut(s)	172, 478
Sau3AI	GATC	6 cut(s)	142, 148, 177, 274, 299, 439
ScrFI	CCNGG	2 cut(s)	323, 339
SduI	GDGCHC	2 cut(s)	187, 201
SfaNI	GCATC	2 cut(s)	92, 546
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	55, 228, 251, 568
SspMI	CTAG	2 cut(s)	188, 450
SstI	GAGCTC	2 cut(s)	187, 201
StyD4I	CCNGG	2 cut(s)	321, 337
TaaI	ACNGT	2 cut(s)	165, 311
TaiI	ACGT	2 cut(s)	96, 542
TaqI	TCGA	3 cut(s)	201, 291, 438
TasI	AATT	4 cut(s)	55, 228, 251, 568
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	3 cut(s)	65, 395, 419
Tru1I	TTAA	4 cut(s)	48, 167, 264, 546
Tru9I	TTAA	4 cut(s)	48, 167, 264, 546
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	2 cut(s)	171, 477
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	4 cut(s)	223, 236, 264, 408
XapI	RAATTY	2 cut(s)	228, 251
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	2 cut(s)	188, 450
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.