Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005344

Physical Location & Seq

Genomic Coordinates Reverse (-)

34288101 .. 34288670

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1255500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATTCTTCCACCACACTGATCAGAAACTATGCAAGCATGAATGACAACGACGCTTATGCTTTTGAAGTTCACGAAGGCATAGAAACAAATGGTGCCATTCTCATGTCGTTGCTAGAAGAATTGCAGGAGGAAGATCGAGACGAGGAGAGATTAAACAGTTTGATCCAATCCCTAGAGGCAGAAATAATCAAACCAACAATATTGGGCAGCGATGGTTTGAGTAATACAGACTCTGAATGCATCACTATCAAAGATTTGGAAGATAGTAACTTGTGGAACATCGTAGGAGGCTTGGACGGTCAGGATTGCTCACGATCACCGTCATTAGATGATTGCGATCAGTTGGGATGGTTTGAAATGGATCAGGTGGCTTGCTCACCAAGTAATGACATGAATTGGTATGTGGATTCTTGTGAGTATGATCAGATGGATAATTTTCCGATTGATCATTGTGAATGGGTTGGTGATTATTCTCATGTTTATTGTAATGGTGTTGGCATAGAAGATGAGCATGTGTACAGCTCTATATGGCAGGAAACAGCCTATGATTCAATCATGTACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.45

Weight (kDa)

4.05

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14560
fragaria_vesca	FvH4_3g16930 FvH4_3g16940
malus_domestica	MD03G1255500.v1.1 MD03G1255600.v1.1 MD11G1276300.v1.1
prunus_persica	Prupe.4G151500_v2.0.a1 Prupe.4G151600_v2.0.a1 Prupe.4G151600_v2.0.a1
pyrus_communis	pycom03g20220 pycom03g20230
rosa_chinensis	RchiOBHm_Chr5g0028161 RchiOBHm_Chr5g0028181
rosa_laevigata	RLG00000033072 RLG00000033073
rosa_multiflora	Rmu_sc0001045.1_g000014 Rmu_sc0001045.1_g000019
rosa_roxburghii	Rroxscaffold_1G00051510 Rroxscaffold_1G00051520
rosa_rugosa	Rorug05G0104600 Rorug05G0104600
rosa_samantha	Rh5AG197700 Rh5AG197800 Rh5BG196300 Rh5BG196400 Rh5CG216400 Rh5CG216500 Rh5DG198000 Rh5DG198100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	160, 372
AfaI	GTAC	2 cut(s)	521, 563
AgsI	TTSAA	3 cut(s)	68, 359, 555
AluBI	AGCT	1 cut(s)	525
AluI	AGCT	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	2 cut(s)	160, 372
AlwNI	CAGNNNCTG	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	210
AsuHPI	GGTGA	3 cut(s)	312, 372, 479
BanI	GGYRCC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	3 cut(s)	209, 345, 424
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BclI	TGATCA	3 cut(s)	21, 424, 448
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	3 cut(s)	116, 176, 568
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	339
BseGI	GGATG	1 cut(s)	356
BseJI	GATNNNNATC	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	160, 372
BspT107I	GGYRCC	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	519
BssMI	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
Bst4CI	ACNGT	3 cut(s)	161, 302, 324
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	37, 376
BstF5I	GGATG	1 cut(s)	356
BstKTI	GATC	8 cut(s)	24, 139, 168, 320, 343, 367, 427, 451
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
BstNSI	RCATGY	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	37, 376
CaiI	CAGNNNCTG	1 cut(s)	236
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	520, 562
CviAII	CATG	6 cut(s)	40, 106, 394, 479, 515, 559
CviJI	RGCY	4 cut(s)	294, 374, 525, 545
CviKI_1	RGCY	4 cut(s)	294, 374, 525, 545
CviQI	GTAC	2 cut(s)	520, 562
DpnI	GATC	8 cut(s)	23, 138, 167, 319, 342, 366, 426, 450
DpnII	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
EcoT22I	ATGCAT	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	6 cut(s)	43, 109, 397, 482, 518, 562
FatI	CATG	6 cut(s)	39, 105, 393, 478, 514, 558
FbaI	TGATCA	3 cut(s)	21, 424, 448
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	3 cut(s)	116, 176, 568
GluI	GCNGC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	6 cut(s)	43, 109, 397, 482, 518, 562
HinfI	GANTC	4 cut(s)	5, 233, 410, 551
HphI	GGTGA	3 cut(s)	312, 372, 479
Hpy166II	GTNNAC	2 cut(s)	73, 520
Hpy188I	TCNGA	4 cut(s)	26, 238, 429, 444
Hpy188III	TCNNGA	4 cut(s)	74, 140, 305, 315
Hpy8I	GTNNAC	2 cut(s)	73, 520
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	3 cut(s)	161, 302, 324
HpyCH4V	TGCA	3 cut(s)	35, 127, 243
Hsp92II	CATG	6 cut(s)	43, 109, 397, 482, 518, 562
Ksp22I	TGATCA	3 cut(s)	21, 424, 448
Kzo9I	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
LpnPI	CCDG	4 cut(s)	113, 290, 353, 521
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	3 cut(s)	116, 176, 568
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	8 cut(s)	23, 138, 167, 319, 342, 366, 426, 450
MboI	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
MboII	GAAGA	4 cut(s)	131, 146, 275, 518
MluCI	AATT	3 cut(s)	122, 397, 436
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	4 cut(s)	124, 139, 172, 284
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	245
NdeII	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
NlaIII	CATG	6 cut(s)	43, 109, 397, 482, 518, 562
NlaIV	GGNNCC	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	518
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	5, 410, 551
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	521, 563
RsaNI	GTAC	2 cut(s)	520, 562
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	8 cut(s)	21, 136, 165, 317, 340, 364, 424, 448
SchI	GAGTC	1 cut(s)	227
SetI	ASST	2 cut(s)	372, 527
SfaNI	GCATC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	122, 397, 436
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	3 cut(s)	116, 176, 568
TaaI	ACNGT	3 cut(s)	161, 302, 324
TaqI	TCGA	1 cut(s)	139
TasI	AATT	3 cut(s)	122, 397, 436
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	3 cut(s)	5, 410, 551
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	56, 410
TspRI	CASTG	1 cut(s)	24
XceI	RCATGY	1 cut(s)	518
XspI	CTAG	3 cut(s)	116, 176, 568
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.