AT3G14980

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005139
Physical Location & Seq
Reverse (-)
5039812 .. 5045525
5714 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14980.1

Sequence Viewer

Length: 3570 bp
ATGCTTCCCGGAGCTGAGATTGAGATGTTAGGAGGTGACTGCTTTGAAGGGTCATATGAGGATCATCAGATATTCAGAGAAGTTTTCTTTGGAAGTGATCCTGGAAATACTACTAAAAGATGTCTCGTTACTGGAGCCATTAACTTCGAATGTGATTCCAGTAAGAATGTCAATTCCTCTCTGAGTTCCAACTCTGTGGTAACTAGTGGATATGCATGTCCACAAGGTTTTGAGGCATCTGCTTCAAGAGATGGTTCAGATTTTAACACTAAAGCTAAGAGAGTGAAGCTTTCAGGTAATAAGCATTTGGATGCAAGGGACGAAAAGGGATCTGCTTTGCATGGTTTTCCAACTTCGGACATAGCTAGAGAGACGATACCTCTCCATTTAGTTGAATCATCTAACAAGGGTGTTTCAACTAGCTCATATTTGTTGAAGCACAGCATAGTAAAGGGAAGAGAAGTTTATCTGGGTGGCATTGTGTCTGGAAAGTGTAAGTCACTAAACTTGGACAAATGCGATGGAAAGGAATTTAAAGCTATTGCCTCTCCTGTTTCTCAGGAGAGCTTCGCAACCAGAATGATCTCTGTAGGTGCTTCTACGCCGCATAGTGAGAAGGCTTGCTTCCCGCTACAGTTGAACAACGGATCTAAAGTATCTCCTAATGAGTTAATTATGTCTAAAACCTGCCTAAAGATTGATCCTAAAGAGGACCCCCGTCCTCTTCTCTACAAGTATGTCTGTAAGGTTCTAACTGCTGCCAGATGGAAAATTGAGAAGCGCGAAAGATCAGCAGGTAGGAAACATGTAGACACATTTTACATATCGCCAGAGGGACGGAAATTTCGTGAATTTGGGTCAGCTTGGAAAGCATTGGGTGGGATCCTATTAGCTGATCGTAAGTTAATGGATACTGGTACTAAGAAATGGACTGGTATTAATGACTTCTGGTCCGATCTCTCTCTTACACTGTTGGACATCGAGGAGAACATGAAAAATTTAAATCTTGCTAACACACGGGCACTTTGGTGGAGTGCCTTAGAGCCTTTTGTGGTTGTTGTCTTCATTTCTAAGCAAGTTGGTTCTTTAAGAAAAGGAAATAAAGTTGAAGTTGCAAGGAATTCAAATCCAGACAAGTTGAAGAAAGAAGATACAATTTGTTTGAACCTGATTTCAGGCTGTCCTGAAAGTGTGCTGACAGTATCTGAAGGCAGTCATCTTGTTCATGACGTGGATGCTAACCAAGAGATACATTCAGATCTTGAGGTGCAAACTAAAATTTCCTCTCAAAAAGTTTCTTCAAGACTAGAGAGGCAGAGCATAATTGGTAAGGAAATCTCTGGGACTCATGAGCAGGAGGCTAGCAAGGGCATTGTAGCTTCAAAATTGATAGCAGAAGACATGCATGAAAGTGTTATGAGAAAGAACTTACACAGAAGATCAAAGAAAATATCCGATATCAAACCAGCTTCCTTGGACCAACATGATTCACTAGATTCTAATTCTCTCAATAGCTTTGAATTCCAGGATAAAGAGATGGGCAACATTCACCTCGTCTCAAAGGGAAGTCGGGATGAAAGGTTGAGGAATGAGAAGATGAATAATTCATGTTGCAATTCAAAGAAAGGAAGAAAGAAAGCTAGGAAGCACTATACTCAAGATGATGACCTTATGGGGTCGACAATAACCAGAAACAAAGGTAAGTTCAGCAGATCAAGCCAGAAAAAGAAAACACAGAAGCCAAAGGCTAGAACAAAGAAAAGAAACAATAGGGGAGGGTGCAGGTTGCTTCCCCGAAGCTCAAGCAATGTGGAAAATCATTTTTTTCAAGGAAATTGGTCTATTTTGGGTCCTAGAACTGTCTTATCATGGTTGATAGCTACCAAAGTAATTTCTAGAGACGAAGTAATCCAGTTACGAGATCCAGATGATGATACTGTGGTAAAAACAGGCCTGGTAACTAAAGATGGAGTGGTTTGTACATGTTGCAACAAGACTGTGTCACTTTCTGAATTCAAGAACCATGCTGGATTTAACCAGAACTGTCCATGTCTGAATCTTTTCATGGGGTCAGGAAAGCCTTTCGCTTCATGTCAGCTGGAAGCTTGGTCTGCTGAGTATAAGGCGCGAAGAAATGGATGGAGATTAGAGAAAGCCTCTGATGATGATCCAAATGATGATTCTTGTGGAGTTTGTGGTGATGGGGGTGAGCTGATCTGCTGTGATAATTGTCCATCTACCTTCCATCAGGCGTGCTTATCAATGCAGGTGCTCCCTGAAGGAAGTTGGTATTGCTCGAGCTGCACATGTTGGATATGCAGCGAGTTGGTTAGTGATAATGCTGAACGCTCTCAGGACTTTAAATGTTCCCAGTGTGCGCATAAATATCATGGAACATGTTTGCAAGGGATAAGTAAACGCAGAAAGCTTTTTCCAGAGACCTACTTTTGTGGTAAAAATTGCGAGAAGGTGTACAATGGTCTTAGTTCTCGTGTTGGGATCATTAACCCTAATGCTGATGGTCTGTCTTGGTCAATTCTTAAATGTTTTCAAGAAGATGGAATGGTTCATTCTGCCCGAAGGTTGGCGCTGAAGGCTGAATGCAACTCGAAATTAGCTGTTGCCCTATCAATTATGGAGGAAAGCTTTCTGTCTATGGTAGATCCAAGAACTGGTATTGACATGATACCTCATGTGCTATACAACTGGGGGTCAACATTTGCTCGGTTAGACTTTGATGGGTTTTACACAGTGGTTGTGGAAAAGGATGATGTGATGATCTCAGTAGCATCTATCAGGGTGCACGGAGTAACTATTGCAGAGATGCCTCTTGTAGCTACGTGCAGCAAATATCGCCGACAGGGCATGTGTAGAATCCTCGTGGCTGCCATTGAAGAGATGCTTATGTCTCTCAAAGTGGAGAAGCTTGTGGTAGCTGCATTGCCGAGTTTAGTGGAAACTTGGACTGAAGGTTTTGGCTTCAAACCCATGGATGATGAAGAGCGTGATGCTCTCAAAAGAATAAACTTGATGGTATTCCCTGGGACAACTCTGCTCAAGAAAACACTATACGAGAGCACAAAACCCAGCACTATGAAAGGTGTATGTCTTTCTAAAGAACGCAATAACCCATCAAACAAAGAAGCAGATCTAGAGCCAGGTCTAGACAAAGCCGGGTCTCCCATGAGTACCCAAGTTGAGAGCTGTGATCAGATGGTTCCAGCAGGTTCAGATGATGAGCCATCCCCAGGCTTCCCCGTACCACTCGGAGCCGATCAAACAGAACCAACTTCAGAAACAGAGAACCCAAGCCGAGACAGCAATGCCAATGATAGGCCAAATAAAACAACAGTAGTCTCTATAGGAGAAGAAGAAGAAGAAGAATGTTTGCAGAAAGATGTATCAAAGTTATCAGAAGAAGGAAAAGAAACGACAAGGGCTTCTTCTTCCTCTGCAGCTTTAGAAGAAGTTAGTGGTCTAGGACTAGGAGTAGTAAATAATGTTAGCGATGAGATGTTGCTTTGTGTTGATGAACAGCTTGACTCTGATAGCTCTCAGGATTCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005911 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009506 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016581 GO:0016740 GO:0016746 GO:0016747 GO:0017053 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030054 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0032993 GO:0034212 GO:0034641 GO:0036211 GO:0042393 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043966 GO:0043971 GO:0043972 GO:0044030 GO:0044154 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061733 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0072553 GO:0080090 GO:0080188 GO:0090304 GO:0090545 GO:0090568 GO:0097159 GO:0099172 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

1189

Amino Acids

131.33

Weight (kDa)

6.69

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 651 - 701 2.7e-15 Tify domain binding domain
PHD PF00628 729 - 768 2.7e-07 PHD-finger
IDM1_C PF23209 883 - 1021 1.4e-58 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2257
Acc16I TGCGCA 1 cut(s) 2379
Acc36I ACCTGC 5 cut(s) 695, 785, 1773, 2257, 3215
AccB7I CCANNNNNTGG 1 cut(s) 2672
AccI GTMKAC 2 cut(s) 810, 1679
AccII CGCG 2 cut(s) 783, 2128
AciI CCGC 2 cut(s) 605, 629
AcsI RAATTY 8 cut(s) 530, 842, 851, 997, 1120, 1278, 1520, 2012
AcuI CTGAAG 5 cut(s) 1227, 2298, 2612, 2988, 3276
AfaI GTAC 5 cut(s) 919, 1981, 2474, 3190, 3261
AfiI CCNNNNNNNGG 4 cut(s) 2584, 2672, 3248, 3333
AflIII ACRYGT 4 cut(s) 805, 1982, 2306, 2396
AhdI GACNNNNNGTC 1 cut(s) 949
AhlI ACTAGT 1 cut(s) 203
AjiI CACGTC 1 cut(s) 1231
AjnI CCWGG 6 cut(s) 100, 1524, 1953, 3040, 3157, 3247
AjuI GAANNNNNNNTTGG 4 cut(s) 72, 104, 2164, 2196
AleI CACNNNNGTG 1 cut(s) 1027
Alw21I GWGCWC 3 cut(s) 2274, 2805, 3080
Alw26I GTCTC 9 cut(s) 128, 365, 1561, 1893, 2432, 2913, 3183, 3309, 3361
Alw44I GTGCAC 1 cut(s) 2801
AlwNI CAGNNNCTG 1 cut(s) 1205
Ama87I CYCGRG 1 cut(s) 2296
AoxI GGCC 2 cut(s) 1951, 3335
ApaLI GTGCAC 1 cut(s) 2801
ApeKI GCWGC 7 cut(s) 758, 2301, 2319, 2844, 2885, 2936, 3455
ApoI RAATTY 8 cut(s) 530, 842, 851, 997, 1120, 1278, 1520, 2012
ArsI GACNNNNNNTTYG 2 cut(s) 828, 860
AseI ATTAAT 1 cut(s) 939
Asp700I GAANNNNTTC 2 cut(s) 2060, 2646
AspLEI GCGC 4 cut(s) 783, 2128, 2380, 2590
AspS9I GGNCC 4 cut(s) 712, 951, 1477, 1850
AsuC2I CCSGG 2 cut(s) 9, 3175
AsuHPI GGTGA 4 cut(s) 47, 1541, 2210, 2219
AsuII TTCGAA 1 cut(s) 147
AsuNHI GCTAGC 1 cut(s) 1361
AvaI CYCGRG 1 cut(s) 2296
AvaII GGWCC 4 cut(s) 712, 951, 1477, 1850
BaeGI GKGCMC 2 cut(s) 1024, 2805
BaeI ACNNNNGTAYC 2 cut(s) 1926, 1959
BamHI GGATCC 1 cut(s) 882
BauI CACGAG 2 cut(s) 2490, 2879
BbsI GAAGAC 2 cut(s) 1054, 1404
Bbv12I GWGCWC 3 cut(s) 2274, 2805, 3080
BbvI GCAGC 7 cut(s) 745, 2288, 2331, 2856, 2872, 2923, 3467
BciT130I CCWGG 6 cut(s) 102, 1526, 1955, 3042, 3159, 3249
BciVI GTATCC 1 cut(s) 904
BclI TGATCA 1 cut(s) 3208
BcnI CCSGG 2 cut(s) 9, 3175
BcoDI GTCTC 9 cut(s) 128, 365, 1561, 1893, 2432, 2913, 3183, 3309, 3361
BcuI ACTAGT 1 cut(s) 203
BfmI CTRYAG 4 cut(s) 588, 632, 3360, 3453
BfoI RGCGCY 1 cut(s) 2591
BfuAI ACCTGC 5 cut(s) 695, 785, 1773, 2257, 3215
BfuI GTATCC 1 cut(s) 904
BglI GCCNNNNNGGC 1 cut(s) 2862
BglII AGATCT 2 cut(s) 1258, 3148
BisI GCNGC 8 cut(s) 605, 759, 2302, 2320, 2845, 2886, 2937, 3456
BlsI GCNGC 8 cut(s) 606, 760, 2303, 2321, 2846, 2887, 2938, 3457
Bme1390I CCNGG 8 cut(s) 9, 102, 1526, 1955, 3042, 3159, 3175, 3249
Bme18I GGWCC 4 cut(s) 712, 951, 1477, 1850
BmeRI GACNNNNNGTC 1 cut(s) 949
BmeT110I CYCGRG 1 cut(s) 2296
BmgBI CACGTC 1 cut(s) 1231
BmgT120I GGNCC 4 cut(s) 712, 951, 1477, 1850
BmiI GGNNCC 6 cut(s) 136, 714, 884, 1851, 3219, 3271
BmrFI CCNGG 8 cut(s) 9, 102, 1526, 1955, 3042, 3159, 3175, 3249
BmrI ACTGGG 2 cut(s) 2365, 2716
BmsI GCATC 7 cut(s) 245, 301, 1225, 2798, 2814, 2889, 2998
BmtI GCTAGC 1 cut(s) 1365
BmuI ACTGGG 2 cut(s) 2365, 2716
BoxI GACNNNNGTC 1 cut(s) 717
BpiI GAAGAC 2 cut(s) 1054, 1404
BplI GAGNNNNNCTC 2 cut(s) 2141, 2173
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 4 cut(s) 1283, 1641, 1786, 3041
BpuMI CCSGG 2 cut(s) 9, 3175
BsaAI YACGTR 1 cut(s) 2841
BsaBI GATNNNNATC 1 cut(s) 2166
BsaI GGTCTC 2 cut(s) 2432, 3183
BsaJI CCNNGG 5 cut(s) 1473, 2988, 3040, 3041, 3247
Bsc4I CCNNNNNNNGG 4 cut(s) 2584, 2672, 3248, 3333
Bse1I ACTGG 8 cut(s) 136, 159, 919, 937, 1912, 2371, 2677, 2711
Bse3DI GCAATG 3 cut(s) 1813, 2939, 3328
Bse8I GATNNNNATC 1 cut(s) 2166
BseBI CCWGG 6 cut(s) 102, 1526, 1955, 3042, 3159, 3249
BseDI CCNNGG 5 cut(s) 1473, 2988, 3040, 3041, 3247
BseGI GGATG 7 cut(s) 316, 1240, 1579, 2144, 2773, 2998, 3242
BseJI GATNNNNATC 1 cut(s) 2166
BseLI CCNNNNNNNGG 4 cut(s) 2584, 2672, 3248, 3333
BseMI GCAATG 3 cut(s) 1813, 2939, 3328
BseMII CTCAG 7 cut(s) 6, 173, 572, 2106, 2366, 2796, 3569
BseNI ACTGG 8 cut(s) 136, 159, 919, 937, 1912, 2371, 2677, 2711
BseRI GAGGAG 1 cut(s) 998
BseSI GKGCMC 2 cut(s) 1024, 2805
BseXI GCAGC 7 cut(s) 745, 2288, 2331, 2856, 2872, 2923, 3467
BseYI CCCAGC 1 cut(s) 3086
BsgI GTGCAG 3 cut(s) 1801, 2287, 2863
Bsh1236I CGCG 2 cut(s) 783, 2128
BshFI GGCC 2 cut(s) 1953, 3337
BsiHKAI GWGCWC 3 cut(s) 2274, 2805, 3080
BsiHKCI CYCGRG 1 cut(s) 2296
BsiSI CCGG 2 cut(s) 9, 3174
BslFI GGGAC 4 cut(s) 332, 849, 1357, 3058
BslI CCNNNNNNNGG 4 cut(s) 2584, 2672, 3248, 3333
BsmAI GTCTC 9 cut(s) 128, 365, 1561, 1893, 2432, 2913, 3183, 3309, 3361
BsmBI CGTCTC 3 cut(s) 365, 1561, 1893
BsmFI GGGAC 4 cut(s) 332, 849, 1357, 3058
BsmI GAATGC 1 cut(s) 2606
BsnI GGCC 2 cut(s) 1953, 3337
Bso31I GGTCTC 2 cut(s) 2432, 3183
BsoBI CYCGRG 1 cut(s) 2296
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 4 cut(s) 1024, 2274, 2805, 3080
Bsp1407I TGTACA 2 cut(s) 1979, 2472
Bsp19I CCATGG 1 cut(s) 2988
BspACI CCGC 2 cut(s) 605, 629
BspANI GGCC 2 cut(s) 1953, 3337
BspCNI CTCAG 7 cut(s) 7, 174, 571, 2107, 2365, 2795, 3568
BspFNI CGCG 2 cut(s) 783, 2128
BspHI TCATGA 2 cut(s) 1225, 1348
BspLI GGNNCC 6 cut(s) 136, 714, 884, 1851, 3219, 3271
BspMAI CTGCAG 1 cut(s) 3457
BspMI ACCTGC 5 cut(s) 695, 785, 1773, 2257, 3215
BspOI GCTAGC 1 cut(s) 1365
BspQI GCTCTTC 1 cut(s) 2994
BspT104I TTCGAA 1 cut(s) 147
BspTNI GGTCTC 2 cut(s) 2432, 3183
BsrDI GCAATG 3 cut(s) 1813, 2939, 3328
BsrGI TGTACA 2 cut(s) 1979, 2472
BsrI ACTGG 8 cut(s) 136, 159, 919, 937, 1912, 2371, 2677, 2711
BssECI CCNNGG 5 cut(s) 1473, 2988, 3040, 3041, 3247
BssSI CACGAG 2 cut(s) 2490, 2879
BssT1I CCWWGG 2 cut(s) 1473, 2988
Bst2BI CACGAG 2 cut(s) 2490, 2879
Bst2UI CCWGG 6 cut(s) 102, 1526, 1955, 3042, 3159, 3249
Bst4CI ACNGT 9 cut(s) 636, 972, 1201, 1861, 1939, 1999, 2045, 2752, 3352
Bst6I CTCTTC 4 cut(s) 451, 729, 2889, 2994
BstAUI TGTACA 2 cut(s) 1979, 2472
BstBAI YACGTR 1 cut(s) 2841
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 622, 1363, 2254
BstDSI CCRYGG 1 cut(s) 2988
BstF5I GGATG 7 cut(s) 316, 1240, 1579, 2144, 2773, 2998, 3242
BstFNI CGCG 2 cut(s) 783, 2128
BstH2I RGCGCY 1 cut(s) 2591
BstHHI GCGC 4 cut(s) 783, 2128, 2380, 2590
BstMAI GTCTC 9 cut(s) 128, 365, 1561, 1893, 2432, 2913, 3183, 3309, 3361
BstMWI GCNNNNNNNGC 8 cut(s) 869, 1716, 2111, 2301, 2594, 2853, 2862, 3318
BstNI CCWGG 6 cut(s) 102, 1526, 1955, 3042, 3159, 3249
BstNSI RCATGY 7 cut(s) 219, 809, 1405, 1986, 2310, 2400, 2869
BstPAI GACNNNNGTC 1 cut(s) 717
BstSCI CCNGG 8 cut(s) 7, 100, 1524, 1953, 3040, 3157, 3173, 3247
BstSFI CTRYAG 4 cut(s) 588, 632, 3360, 3453
BstSLI GKGCMC 2 cut(s) 1024, 2805
BstUI CGCG 2 cut(s) 783, 2128
BstV1I GCAGC 7 cut(s) 745, 2288, 2331, 2856, 2872, 2923, 3467
BstV2I GAAGAC 2 cut(s) 1054, 1404
BstX2I RGATCY 7 cut(s) 329, 647, 882, 1258, 1921, 2662, 3148
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 7 cut(s) 329, 647, 882, 1258, 1921, 2662, 3148
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 2 cut(s) 1953, 3337
BtgI CCRYGG 1 cut(s) 2988
BtgZI GCGATG 2 cut(s) 534, 3522
BtrI CACGTC 1 cut(s) 1231
BtsCI GGATG 7 cut(s) 316, 1240, 1579, 2144, 2773, 2998, 3242
BtsIMutI CAGTG 3 cut(s) 968, 2378, 2757
BveI ACCTGC 5 cut(s) 695, 785, 1773, 2257, 3215
Cac8I GCNNGC 3 cut(s) 622, 1363, 2254
CaiI CAGNNNCTG 1 cut(s) 1205
CciI TCATGA 2 cut(s) 1225, 1348
CfoI GCGC 4 cut(s) 783, 2128, 2380, 2590
Cfr13I GGNCC 4 cut(s) 712, 951, 1477, 1850
Csp6I GTAC 5 cut(s) 918, 1980, 2473, 3189, 3260
CspCI CAANNNNNGTGG 2 cut(s) 1791, 1826
CviQI GTAC 5 cut(s) 918, 1980, 2473, 3189, 3260
DraI TTTAAA 3 cut(s) 535, 1002, 2362
DriI GACNNNNNGTC 1 cut(s) 949
Eam1104I CTCTTC 4 cut(s) 451, 729, 2889, 2994
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 4 cut(s) 451, 729, 2889, 2994
Eco130I CCWWGG 2 cut(s) 1473, 2988
Eco147I AGGCCT 1 cut(s) 1953
Eco31I GGTCTC 2 cut(s) 2432, 3183
Eco32I GATATC 1 cut(s) 1459
Eco47I GGWCC 4 cut(s) 712, 951, 1477, 1850
Eco57I CTGAAG 5 cut(s) 1227, 2298, 2612, 2988, 3276
Eco88I CYCGRG 1 cut(s) 2296
EcoO109I RGGNCCY 2 cut(s) 712, 1850
EcoRI GAATTC 3 cut(s) 1120, 1520, 2012
EcoRII CCWGG 6 cut(s) 100, 1524, 1953, 3040, 3157, 3247
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 2 cut(s) 1473, 2988
EcoT22I ATGCAT 2 cut(s) 217, 1407
ErhI CCWWGG 2 cut(s) 1473, 2988
Esp3I CGTCTC 3 cut(s) 365, 1561, 1893
FalI AAGNNNNNCTT 6 cut(s) 608, 640, 2886, 2918, 3427, 3459
FaqI GGGAC 4 cut(s) 332, 849, 1357, 3058
FauI CCCGC 1 cut(s) 636
FauNDI CATATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 3208
FblI GTMKAC 2 cut(s) 810, 1679
Fnu4HI GCNGC 8 cut(s) 605, 759, 2302, 2320, 2845, 2886, 2937, 3456
FokI GGATG 7 cut(s) 323, 1247, 1586, 2151, 2780, 3005, 3229
Fsp4HI GCNGC 8 cut(s) 605, 759, 2302, 2320, 2845, 2886, 2937, 3456
FspAI RTGCGCAY 1 cut(s) 2379
FspI TGCGCA 1 cut(s) 2379
GlaI GCGC 4 cut(s) 782, 2127, 2379, 2589
GluI GCNGC 8 cut(s) 605, 759, 2302, 2320, 2845, 2886, 2937, 3456
GsaI CCCAGC 1 cut(s) 3090
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 2591
HaeIII GGCC 2 cut(s) 1953, 3337
HapII CCGG 2 cut(s) 9, 3174
HhaI GCGC 4 cut(s) 783, 2128, 2380, 2590
Hin6I GCGC 4 cut(s) 781, 2126, 2378, 2588
HinP1I GCGC 4 cut(s) 781, 2126, 2378, 2588
HincII GTYRAC 2 cut(s) 1680, 2715
HindII GTYRAC 2 cut(s) 1680, 2715
HindIII AAGCTT 5 cut(s) 287, 2103, 2426, 2644, 2924
HpaII CCGG 2 cut(s) 9, 3174
HphI GGTGA 4 cut(s) 47, 1541, 2210, 2219
Hpy166II GTNNAC 7 cut(s) 221, 811, 1680, 2417, 2473, 2715, 2803
Hpy8I GTNNAC 7 cut(s) 221, 811, 1680, 2417, 2473, 2715, 2803
HpyCH4III ACNGT 9 cut(s) 636, 972, 1201, 1861, 1939, 1999, 2045, 2752, 3352
HpyCH4IV ACGT 2 cut(s) 1230, 2840
HpyF10VI GCNNNNNNNGC 8 cut(s) 869, 1716, 2111, 2301, 2594, 2853, 2862, 3318
HpySE526I ACGT 2 cut(s) 1230, 2840
HspAI GCGC 4 cut(s) 781, 2126, 2378, 2588
Ksp22I TGATCA 1 cut(s) 3208
LguI GCTCTTC 1 cut(s) 2994
LmnI GCTCC 4 cut(s) 11, 134, 2277, 3269
Lsp1109I GCAGC 7 cut(s) 745, 2288, 2331, 2856, 2872, 2923, 3467
LweI GCATC 7 cut(s) 245, 301, 1225, 2798, 2814, 2889, 2998
MaeII ACGT 2 cut(s) 1230, 2840
MaeIII GTNAC 8 cut(s) 35, 127, 199, 498, 1914, 1957, 2001, 2809
MflI RGATCY 7 cut(s) 329, 647, 882, 1258, 1921, 2662, 3148
MhlI GDGCHC 4 cut(s) 1024, 2274, 2805, 3080
MlyI GAGTC 2 cut(s) 1339, 3536
MmeI TCCRAC 4 cut(s) 213, 374, 954, 2291
Mph1103I ATGCAT 2 cut(s) 217, 1407
MroXI GAANNNNTTC 2 cut(s) 2060, 2646
MslI CAYNNNNRTG 3 cut(s) 309, 1027, 1410
MspA1I CMGCKG 1 cut(s) 2098
MspI CCGG 2 cut(s) 9, 3174
MspR9I CCNGG 8 cut(s) 9, 102, 1526, 1955, 3042, 3159, 3175, 3249
Mva1269I GAATGC 1 cut(s) 2606
MvaI CCWGG 6 cut(s) 102, 1526, 1955, 3042, 3159, 3249
MvnI CGCG 2 cut(s) 783, 2128
MwoI GCNNNNNNNGC 8 cut(s) 869, 1716, 2111, 2301, 2594, 2853, 2862, 3318
NciI CCSGG 2 cut(s) 9, 3175
NcoI CCATGG 1 cut(s) 2988
NdeI CATATG 1 cut(s) 55
NheI GCTAGC 1 cut(s) 1361
NlaIV GGNNCC 6 cut(s) 136, 714, 884, 1851, 3219, 3271
NmeAIII GCCGAG 2 cut(s) 2970, 3338
NmuCI GTSAC 3 cut(s) 35, 498, 2001
NsbI TGCGCA 1 cut(s) 2379
NsiI ATGCAT 2 cut(s) 217, 1407
NspI RCATGY 7 cut(s) 219, 809, 1405, 1986, 2310, 2400, 2869
NspV TTCGAA 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 1027
PaeR7I CTCGAG 1 cut(s) 2296
PagI TCATGA 2 cut(s) 1225, 1348
PaqCI CACCTGC 1 cut(s) 2257
PasI CCCWGGG 1 cut(s) 3041
PceI AGGCCT 1 cut(s) 1953
PciI ACATGT 4 cut(s) 805, 1982, 2306, 2396
PciSI GCTCTTC 1 cut(s) 2994
PcsI WCGNNNNNNNCGW 1 cut(s) 844
PctI GAATGC 1 cut(s) 2606
PdmI GAANNNNTTC 2 cut(s) 2060, 2646
PfeI GAWTC 8 cut(s) 155, 395, 1487, 1496, 2056, 2180, 2874, 3560
PflFI GACNNNGTC 1 cut(s) 1999
PflMI CCANNNNNTGG 1 cut(s) 2672
PfoI TCCNGGA 3 cut(s) 7, 100, 1524
PkrI GCNGC 8 cut(s) 606, 760, 2303, 2321, 2846, 2887, 2938, 3457
PleI GAGTC 2 cut(s) 1339, 3536
PpsI GAGTC 2 cut(s) 1339, 3536
Ppu21I YACGTR 1 cut(s) 2841
PpuMI RGGWCCY 2 cut(s) 712, 1850
PscI ACATGT 4 cut(s) 805, 1982, 2306, 2396
PshAI GACNNNNGTC 1 cut(s) 717
PshBI ATTAAT 1 cut(s) 939
Psp5II RGGWCCY 2 cut(s) 712, 1850
Psp6I CCWGG 6 cut(s) 100, 1524, 1953, 3040, 3157, 3247
PspFI CCCAGC 1 cut(s) 3086
PspGI CCWGG 6 cut(s) 100, 1524, 1953, 3040, 3157, 3247
PspN4I GGNNCC 6 cut(s) 136, 714, 884, 1851, 3219, 3271
PspPI GGNCC 4 cut(s) 712, 951, 1477, 1850
PspPPI RGGWCCY 2 cut(s) 712, 1850
PspXI VCTCGAGB 1 cut(s) 2296
PstI CTGCAG 1 cut(s) 3457
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 7 cut(s) 329, 647, 882, 1258, 1921, 2662, 3148
PsyI GACNNNGTC 1 cut(s) 1999
PvuII CAGCTG 1 cut(s) 2098
RsaI GTAC 5 cut(s) 919, 1981, 2474, 3190, 3261
RsaNI GTAC 5 cut(s) 918, 1980, 2473, 3189, 3260
RseI CAYNNNNRTG 3 cut(s) 309, 1027, 1410
SalI GTCGAC 1 cut(s) 1678
SapI GCTCTTC 1 cut(s) 2994
SatI GCNGC 8 cut(s) 605, 759, 2302, 2320, 2845, 2886, 2937, 3456
Sau96I GGNCC 4 cut(s) 712, 951, 1477, 1850
SchI GAGTC 2 cut(s) 1339, 3536
ScrFI CCNGG 8 cut(s) 9, 102, 1526, 1955, 3042, 3159, 3175, 3249
SduI GDGCHC 4 cut(s) 1024, 2274, 2805, 3080
SfaNI GCATC 7 cut(s) 245, 301, 1225, 2798, 2814, 2889, 2998
SfcI CTRYAG 4 cut(s) 588, 632, 3360, 3453
Sfr274I CTCGAG 1 cut(s) 2296
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 4 cut(s) 712, 951, 1477, 1850
SlaI CTCGAG 1 cut(s) 2296
SmiI ATTTAAAT 1 cut(s) 1002
SmiMI CAYNNNNRTG 3 cut(s) 309, 1027, 1410
SmlI CTYRAG 5 cut(s) 1262, 1656, 1801, 2296, 3056
SmoI CTYRAG 5 cut(s) 1262, 1656, 1801, 2296, 3056
SpeI ACTAGT 1 cut(s) 203
SseBI AGGCCT 1 cut(s) 1953
SsiI CCGC 2 cut(s) 605, 629
StuI AGGCCT 1 cut(s) 1953
StyD4I CCNGG 8 cut(s) 7, 100, 1524, 1953, 3040, 3157, 3173, 3247
StyI CCWWGG 2 cut(s) 1473, 2988
SwaI ATTTAAAT 1 cut(s) 1002
TaaI ACNGT 9 cut(s) 636, 972, 1201, 1861, 1939, 1999, 2045, 2752, 3352
TaiI ACGT 2 cut(s) 1233, 2843
TaqI TCGA 5 cut(s) 147, 981, 1679, 2297, 2609
TatI WGTACW 2 cut(s) 1979, 2472
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 8 cut(s) 155, 395, 1487, 1496, 2056, 2180, 2874, 3560
TscAI CASTG 3 cut(s) 975, 2378, 2757
TseFI GTSAC 3 cut(s) 35, 498, 2001
TseI GCWGC 7 cut(s) 758, 2301, 2319, 2844, 2885, 2936, 3455
Tsp45I GTSAC 3 cut(s) 35, 498, 2001
TspGWI ACGGA 3 cut(s) 660, 853, 2820
TspRI CASTG 3 cut(s) 975, 2378, 2757
Tth111I GACNNNGTC 1 cut(s) 1999
Van91I CCANNNNNTGG 1 cut(s) 2672
VneI GTGCAC 1 cut(s) 2801
VpaK11BI GGWCC 4 cut(s) 712, 951, 1477, 1850
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 8 cut(s) 530, 842, 851, 997, 1120, 1278, 1520, 2012
XbaI TCTAGA 3 cut(s) 1895, 3151, 3163
XceI RCATGY 7 cut(s) 219, 809, 1405, 1986, 2310, 2400, 2869
XhoI CTCGAG 1 cut(s) 2296
XmiI GTMKAC 2 cut(s) 810, 1679
XmnI GAANNNNTTC 2 cut(s) 2060, 2646
Zsp2I ATGCAT 2 cut(s) 217, 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.