presynapse organization
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14980 AT3G14980 AT3G14980 AT3G14980 AT3G14980 AT3G14980 |
| fragaria_vesca | FvH4_3g18560 FvH4_3g18560 |
| malus_domestica | MD03G1241200.v1.1 MD11G1260600.v1.1 |
| prunus_persica | Prupe.4G167700_v2.0.a1 Prupe.4G167700_v2.0.a1 Prupe.4G167700_v2.0.a1 Prupe.4G167700_v2.0.a1 Prupe.4G167700_v2.0.a1 |
| pyrus_communis | pycom03g18780 pycom11g23000 |
| rosa_chinensis | RchiOBHm_Chr5g0031311 |
| rosa_laevigata | RLG00000033300 |
| rosa_multiflora | Rmu_co8157186.1_g000001 Rmu_sc0007782.1_g000017 |
| rosa_roxburghii | Rroxscaffold_1G00048980 |
| rosa_rugosa | Rorug05G0124000 Rorug05G0124100 Rorug05G0124200 |
| rosa_samantha | Rh5AG217300 Rh5BG217000 Rh5CG240600 Rh5DG222200 |
| rosa_wichuraiana | Rw5G019870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 258, 939 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1410, 4043 |
| AatII | GACGTC | 1 cut(s) | 2054 |
| Acc36I | ACCTGC | 1 cut(s) | 2009 |
| Acc65I | GGTACC | 1 cut(s) | 1979 |
| AccB1I | GGYRCC | 2 cut(s) | 1979, 4154 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 981 |
| AccBSI | CCGCTC | 1 cut(s) | 3650 |
| AccII | CGCG | 1 cut(s) | 3021 |
| AciI | CCGC | 8 cut(s) | 569, 985, 1010, 1368, 3356, 3650, 3858, 4158 |
| AcsI | RAATTY | 6 cut(s) | 272, 1666, 2012, 3259, 3764, 4078 |
| AcuI | CTGAAG | 5 cut(s) | 288, 1653, 2823, 3140, 4119 |
| AcyI | GRCGYC | 3 cut(s) | 2051, 3403, 4155 |
| AdeI | CACNNNGTG | 2 cut(s) | 1964, 2906 |
| AfaI | GTAC | 5 cut(s) | 1019, 1981, 2816, 2878, 3513 |
| AflIII | ACRYGT | 1 cut(s) | 4431 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3407, 4465 |
| AhlI | ACTAGT | 2 cut(s) | 527, 1292 |
| AjnI | CCWGG | 7 cut(s) | 692, 2004, 2325, 2486, 2630, 3387, 3568 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 1368, 1400, 2957, 2989, 4098, 4130 |
| Alw21I | GWGCWC | 3 cut(s) | 1324, 1807, 2275 |
| Alw26I | GTCTC | 4 cut(s) | 478, 1262, 1770, 2790 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1130, 1388, 2534 |
| AoxI | GGCC | 5 cut(s) | 1053, 1284, 1438, 1921, 4342 |
| ApeKI | GCWGC | 8 cut(s) | 878, 1027, 1136, 2808, 3278, 3464, 4198, 4396 |
| ApoI | RAATTY | 6 cut(s) | 272, 1666, 2012, 3259, 3764, 4078 |
| AseI | ATTAAT | 2 cut(s) | 2115, 3033 |
| Asp718I | GGTACC | 1 cut(s) | 1979 |
| AspLEI | GCGC | 3 cut(s) | 110, 3118, 4157 |
| AspS9I | GGNCC | 5 cut(s) | 832, 1053, 1438, 2002, 4342 |
| AsuII | TTCGAA | 1 cut(s) | 777 |
| AvaII | GGWCC | 2 cut(s) | 832, 2002 |
| AxyI | CCTNAGG | 2 cut(s) | 948, 1389 |
| BaeGI | GKGCMC | 1 cut(s) | 184 |
| BamHI | GGATCC | 1 cut(s) | 50 |
| BanI | GGYRCC | 2 cut(s) | 1979, 4154 |
| BbsI | GAAGAC | 2 cut(s) | 3002, 3528 |
| Bbv12I | GWGCWC | 3 cut(s) | 1324, 1807, 2275 |
| BbvI | GCAGC | 8 cut(s) | 865, 1014, 1123, 2820, 3265, 3451, 4185, 4408 |
| BceAI | ACGGC | 1 cut(s) | 2286 |
| BciT130I | CCWGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| BciVI | GTATCC | 1 cut(s) | 808 |
| BclI | TGATCA | 1 cut(s) | 2692 |
| BcoDI | GTCTC | 4 cut(s) | 478, 1262, 1770, 2790 |
| BcuI | ACTAGT | 2 cut(s) | 527, 1292 |
| BfmI | CTRYAG | 8 cut(s) | 879, 1028, 1808, 2370, 2789, 3279, 3312, 3516 |
| BfoI | RGCGCY | 2 cut(s) | 111, 4158 |
| BfuAI | ACCTGC | 1 cut(s) | 2009 |
| BfuI | GTATCC | 1 cut(s) | 808 |
| BglII | AGATCT | 2 cut(s) | 311, 1078 |
| BmcAI | AGTACT | 1 cut(s) | 2878 |
| Bme1390I | CCNGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| Bme18I | GGWCC | 2 cut(s) | 832, 2002 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3407, 4465 |
| BmgT120I | GGNCC | 5 cut(s) | 832, 1053, 1438, 2002, 4342 |
| BmiI | GGNNCC | 8 cut(s) | 52, 834, 1981, 2447, 2665, 2956, 4156, 4275 |
| BmrFI | CCNGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| BmrI | ACTGGG | 1 cut(s) | 1978 |
| BmuI | ACTGGG | 1 cut(s) | 1978 |
| BoxI | GACNNNNGTC | 1 cut(s) | 837 |
| BpiI | GAAGAC | 2 cut(s) | 3002, 3528 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 671, 703 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1323 |
| Bpu14I | TTCGAA | 1 cut(s) | 777 |
| BpuEI | CTTGAG | 1 cut(s) | 3666 |
| BsaAI | YACGTR | 1 cut(s) | 1868 |
| BsaHI | GRCGYC | 3 cut(s) | 2051, 3403, 4155 |
| BsaJI | CCNNGG | 8 cut(s) | 756, 768, 2326, 2451, 2487, 3388, 3693, 4188 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1212, 1242, 1767, 1797 |
| Bse118I | RCCGGY | 1 cut(s) | 292 |
| Bse21I | CCTNAGG | 2 cut(s) | 948, 1389 |
| Bse3DI | GCAATG | 2 cut(s) | 1666, 4253 |
| BseBI | CCWGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| BseDI | CCNNGG | 8 cut(s) | 756, 768, 2326, 2451, 2487, 3388, 3693, 4188 |
| BseMI | GCAATG | 2 cut(s) | 1666, 4253 |
| BseRI | GAGGAG | 3 cut(s) | 263, 735, 1635 |
| BseSI | GKGCMC | 1 cut(s) | 184 |
| BseXI | GCAGC | 8 cut(s) | 865, 1014, 1123, 2820, 3265, 3451, 4185, 4408 |
| BseYI | CCCAGC | 2 cut(s) | 457, 1487 |
| BsgI | GTGCAG | 4 cut(s) | 273, 622, 1822, 2812 |
| Bsh1236I | CGCG | 1 cut(s) | 3021 |
| BshFI | GGCC | 5 cut(s) | 1055, 1286, 1440, 1923, 4344 |
| BshNI | GGYRCC | 2 cut(s) | 1979, 4154 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1324, 1807, 2275 |
| BsiSI | CCGG | 2 cut(s) | 293, 4400 |
| BsmAI | GTCTC | 4 cut(s) | 478, 1262, 1770, 2790 |
| BsmI | GAATGC | 6 cut(s) | 1489, 1954, 3075, 3134, 3176, 3622 |
| BsnI | GGCC | 5 cut(s) | 1055, 1286, 1440, 1923, 4344 |
| Bsp119I | TTCGAA | 1 cut(s) | 777 |
| Bsp1286I | GDGCHC | 4 cut(s) | 184, 1324, 1807, 2275 |
| BspACI | CCGC | 8 cut(s) | 569, 985, 1010, 1368, 3356, 3650, 3858, 4158 |
| BspANI | GGCC | 5 cut(s) | 1055, 1286, 1440, 1923, 4344 |
| BspFNI | CGCG | 1 cut(s) | 3021 |
| BspHI | TCATGA | 3 cut(s) | 2119, 2920, 3079 |
| BspLI | GGNNCC | 8 cut(s) | 52, 834, 1981, 2447, 2665, 2956, 4156, 4275 |
| BspMAI | CTGCAG | 6 cut(s) | 883, 1032, 1812, 2374, 2793, 3283 |
| BspMI | ACCTGC | 1 cut(s) | 2009 |
| BspT104I | TTCGAA | 1 cut(s) | 777 |
| BspT107I | GGYRCC | 2 cut(s) | 1979, 4154 |
| BsrBI | CCGCTC | 1 cut(s) | 3650 |
| BsrDI | GCAATG | 2 cut(s) | 1666, 4253 |
| BsrFI | RCCGGY | 1 cut(s) | 292 |
| BssAI | RCCGGY | 1 cut(s) | 292 |
| BssECI | CCNNGG | 8 cut(s) | 756, 768, 2326, 2451, 2487, 3388, 3693, 4188 |
| BssNI | GRCGYC | 3 cut(s) | 2051, 3403, 4155 |
| BssT1I | CCWWGG | 4 cut(s) | 768, 2451, 3693, 4188 |
| Bst2UI | CCWGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| Bst6I | CTCTTC | 1 cut(s) | 3417 |
| BstACI | GRCGYC | 3 cut(s) | 2051, 3403, 4155 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3983 |
| BstBAI | YACGTR | 1 cut(s) | 1868 |
| BstBI | TTCGAA | 1 cut(s) | 777 |
| BstC8I | GCNNGC | 6 cut(s) | 571, 865, 2260, 2621, 2679, 2929 |
| BstEII | GGTNACC | 2 cut(s) | 581, 2482 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 399 |
| BstFNI | CGCG | 1 cut(s) | 3021 |
| BstH2I | RGCGCY | 2 cut(s) | 111, 4158 |
| BstHHI | GCGC | 3 cut(s) | 110, 3118, 4157 |
| BstMAI | GTCTC | 4 cut(s) | 478, 1262, 1770, 2790 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 1142, 1379, 2298, 2636, 2817, 2826, 2954, 3122, 3983 |
| BstNI | CCWGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| BstNSI | RCATGY | 4 cut(s) | 554, 755, 2931, 4435 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 837 |
| BstPI | GGTNACC | 2 cut(s) | 581, 2482 |
| BstSCI | CCNGG | 7 cut(s) | 692, 2004, 2325, 2486, 2630, 3387, 3568 |
| BstSFI | CTRYAG | 8 cut(s) | 879, 1028, 1808, 2370, 2789, 3279, 3312, 3516 |
| BstSLI | GKGCMC | 1 cut(s) | 184 |
| BstSNI | TACGTA | 1 cut(s) | 1868 |
| BstUI | CGCG | 1 cut(s) | 3021 |
| BstV1I | GCAGC | 8 cut(s) | 865, 1014, 1123, 2820, 3265, 3451, 4185, 4408 |
| BstV2I | GAAGAC | 2 cut(s) | 3002, 3528 |
| BstX2I | RGATCY | 6 cut(s) | 50, 311, 1078, 1165, 3688, 4192 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 700, 1050 |
| BstYI | RGATCY | 6 cut(s) | 50, 311, 1078, 1165, 3688, 4192 |
| Bsu36I | CCTNAGG | 2 cut(s) | 948, 1389 |
| BsuI | GTATCC | 1 cut(s) | 808 |
| BsuRI | GGCC | 5 cut(s) | 1055, 1286, 1440, 1923, 4344 |
| BtsI | GCAGTG | 1 cut(s) | 3411 |
| BveI | ACCTGC | 1 cut(s) | 2009 |
| Cac8I | GCNNGC | 6 cut(s) | 571, 865, 2260, 2621, 2679, 2929 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1130, 1388, 2534 |
| CciI | TCATGA | 3 cut(s) | 2119, 2920, 3079 |
| CfoI | GCGC | 3 cut(s) | 110, 3118, 4157 |
| Cfr10I | RCCGGY | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 5 cut(s) | 832, 1053, 1438, 2002, 4342 |
| CseI | GACGC | 3 cut(s) | 830, 3070, 3411 |
| Csp6I | GTAC | 5 cut(s) | 1018, 1980, 2815, 2877, 3512 |
| CviQI | GTAC | 5 cut(s) | 1018, 1980, 2815, 2877, 3512 |
| DinI | GGCGCC | 1 cut(s) | 4156 |
| DraI | TTTAAA | 2 cut(s) | 2137, 2893 |
| DraIII | CACNNNGTG | 2 cut(s) | 1964, 2906 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1410, 4043 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3407, 4465 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1410, 4043 |
| Eam1104I | CTCTTC | 1 cut(s) | 3417 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3407, 4465 |
| EarI | CTCTTC | 1 cut(s) | 3417 |
| EciI | GGCGGA | 1 cut(s) | 3873 |
| Eco105I | TACGTA | 1 cut(s) | 1868 |
| Eco130I | CCWWGG | 4 cut(s) | 768, 2451, 3693, 4188 |
| Eco32I | GATATC | 4 cut(s) | 1060, 1887, 3309, 4171 |
| Eco47I | GGWCC | 2 cut(s) | 832, 2002 |
| Eco57I | CTGAAG | 5 cut(s) | 288, 1653, 2823, 3140, 4119 |
| Eco81I | CCTNAGG | 2 cut(s) | 948, 1389 |
| Eco91I | GGTNACC | 2 cut(s) | 581, 2482 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 399 |
| EcoO109I | RGGNCCY | 1 cut(s) | 832 |
| EcoO65I | GGTNACC | 2 cut(s) | 581, 2482 |
| EcoRII | CCWGG | 7 cut(s) | 692, 2004, 2325, 2486, 2630, 3387, 3568 |
| EcoRV | GATATC | 4 cut(s) | 1060, 1887, 3309, 4171 |
| EcoT14I | CCWWGG | 4 cut(s) | 768, 2451, 3693, 4188 |
| EcoT22I | ATGCAT | 3 cut(s) | 2933, 2950, 3077 |
| EgeI | GGCGCC | 1 cut(s) | 4156 |
| EheI | GGCGCC | 1 cut(s) | 4156 |
| ErhI | CCWWGG | 4 cut(s) | 768, 2451, 3693, 4188 |
| FauI | CCCGC | 3 cut(s) | 562, 1361, 3643 |
| FauNDI | CATATG | 1 cut(s) | 2950 |
| FbaI | TGATCA | 1 cut(s) | 2692 |
| GlaI | GCGC | 3 cut(s) | 109, 3117, 4156 |
| GsaI | CCCAGC | 2 cut(s) | 461, 1491 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| HaeII | RGCGCY | 2 cut(s) | 111, 4158 |
| HaeIII | GGCC | 5 cut(s) | 1055, 1286, 1440, 1923, 4344 |
| HapII | CCGG | 2 cut(s) | 293, 4400 |
| HgaI | GACGC | 3 cut(s) | 830, 3070, 3411 |
| HhaI | GCGC | 3 cut(s) | 110, 3118, 4157 |
| Hin1I | GRCGYC | 3 cut(s) | 2051, 3403, 4155 |
| Hin6I | GCGC | 3 cut(s) | 108, 3116, 4155 |
| HinP1I | GCGC | 3 cut(s) | 108, 3116, 4155 |
| HincII | GTYRAC | 1 cut(s) | 4213 |
| HindII | GTYRAC | 1 cut(s) | 4213 |
| HindIII | AAGCTT | 3 cut(s) | 978, 1675, 3452 |
| HpaII | CCGG | 2 cut(s) | 293, 4400 |
| Hpy166II | GTNNAC | 6 cut(s) | 2714, 2900, 2909, 3060, 4213, 4459 |
| Hpy8I | GTNNAC | 6 cut(s) | 2714, 2900, 2909, 3060, 4213, 4459 |
| Hpy99I | CGWCG | 2 cut(s) | 3387, 3405 |
| HpyAV | CCTTC | 9 cut(s) | 41, 2275, 2617, 2798, 3115, 3662, 3767, 3791, 4064 |
| HpyCH4IV | ACGT | 3 cut(s) | 1867, 2051, 3253 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 1142, 1379, 2298, 2636, 2817, 2826, 2954, 3122, 3983 |
| HpySE526I | ACGT | 3 cut(s) | 1867, 2051, 3253 |
| Hsp92I | GRCGYC | 3 cut(s) | 2051, 3403, 4155 |
| HspAI | GCGC | 3 cut(s) | 108, 3116, 4155 |
| KasI | GGCGCC | 1 cut(s) | 4154 |
| KpnI | GGTACC | 1 cut(s) | 1983 |
| Ksp22I | TGATCA | 1 cut(s) | 2692 |
| LmnI | GCTCC | 5 cut(s) | 787, 1345, 2794, 2954, 4243 |
| Lsp1109I | GCAGC | 8 cut(s) | 865, 1014, 1123, 2820, 3265, 3451, 4185, 4408 |
| MaeII | ACGT | 3 cut(s) | 1867, 2051, 3253 |
| MbiI | CCGCTC | 1 cut(s) | 3650 |
| MfeI | CAATTG | 1 cut(s) | 3232 |
| MflI | RGATCY | 6 cut(s) | 50, 311, 1078, 1165, 3688, 4192 |
| MhlI | GDGCHC | 4 cut(s) | 184, 1324, 1807, 2275 |
| Mly113I | GGCGCC | 1 cut(s) | 4155 |
| MlyI | GAGTC | 6 cut(s) | 226, 528, 938, 2060, 2539, 4010 |
| MmeI | TCCRAC | 3 cut(s) | 216, 2816, 4065 |
| Mph1103I | ATGCAT | 3 cut(s) | 2933, 2950, 3077 |
| MslI | CAYNNNNRTG | 7 cut(s) | 36, 1584, 2124, 3209, 3627, 3717, 4220 |
| MspA1I | CMGCKG | 3 cut(s) | 1368, 2639, 2811 |
| MspI | CCGG | 2 cut(s) | 293, 4400 |
| MspR9I | CCNGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| MunI | CAATTG | 1 cut(s) | 3232 |
| Mva1269I | GAATGC | 6 cut(s) | 1489, 1954, 3075, 3134, 3176, 3622 |
| MvaI | CCWGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| MvnI | CGCG | 1 cut(s) | 3021 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 1142, 1379, 2298, 2636, 2817, 2826, 2954, 3122, 3983 |
| NarI | GGCGCC | 1 cut(s) | 4155 |
| NdeI | CATATG | 1 cut(s) | 2950 |
| NlaIV | GGNNCC | 8 cut(s) | 52, 834, 1981, 2447, 2665, 2956, 4156, 4275 |
| NmeAIII | GCCGAG | 1 cut(s) | 781 |
| NmuCI | GTSAC | 7 cut(s) | 211, 218, 343, 520, 581, 718, 3409 |
| NsiI | ATGCAT | 3 cut(s) | 2933, 2950, 3077 |
| NspI | RCATGY | 4 cut(s) | 554, 755, 2931, 4435 |
| NspV | TTCGAA | 1 cut(s) | 777 |
| PaeI | GCATGC | 1 cut(s) | 2931 |
| PagI | TCATGA | 3 cut(s) | 2119, 2920, 3079 |
| PciI | ACATGT | 1 cut(s) | 4431 |
| PctI | GAATGC | 6 cut(s) | 1489, 1954, 3075, 3134, 3176, 3622 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 981 |
| PfoI | TCCNGGA | 2 cut(s) | 2004, 3568 |
| PleI | GAGTC | 6 cut(s) | 225, 527, 937, 2060, 2539, 4009 |
| PluTI | GGCGCC | 1 cut(s) | 4158 |
| PpsI | GAGTC | 6 cut(s) | 225, 527, 937, 2060, 2539, 4009 |
| Ppu21I | YACGTR | 1 cut(s) | 1868 |
| PpuMI | RGGWCCY | 1 cut(s) | 832 |
| PscI | ACATGT | 1 cut(s) | 4431 |
| PshAI | GACNNNNGTC | 1 cut(s) | 837 |
| PshBI | ATTAAT | 2 cut(s) | 2115, 3033 |
| PsiI | TTATAA | 2 cut(s) | 258, 939 |
| Psp5II | RGGWCCY | 1 cut(s) | 832 |
| Psp6I | CCWGG | 7 cut(s) | 692, 2004, 2325, 2486, 2630, 3387, 3568 |
| PspEI | GGTNACC | 2 cut(s) | 581, 2482 |
| PspFI | CCCAGC | 2 cut(s) | 457, 1487 |
| PspGI | CCWGG | 7 cut(s) | 692, 2004, 2325, 2486, 2630, 3387, 3568 |
| PspN4I | GGNNCC | 8 cut(s) | 52, 834, 1981, 2447, 2665, 2956, 4156, 4275 |
| PspPI | GGNCC | 5 cut(s) | 832, 1053, 1438, 2002, 4342 |
| PspPPI | RGGWCCY | 1 cut(s) | 832 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 708, 740 |
| PstI | CTGCAG | 6 cut(s) | 883, 1032, 1812, 2374, 2793, 3283 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1130, 1388, 2534 |
| PsuI | RGATCY | 6 cut(s) | 50, 311, 1078, 1165, 3688, 4192 |
| PvuII | CAGCTG | 2 cut(s) | 2639, 2811 |
| RsaI | GTAC | 5 cut(s) | 1019, 1981, 2816, 2878, 3513 |
| RsaNI | GTAC | 5 cut(s) | 1018, 1980, 2815, 2877, 3512 |
| RseI | CAYNNNNRTG | 7 cut(s) | 36, 1584, 2124, 3209, 3627, 3717, 4220 |
| Sau96I | GGNCC | 5 cut(s) | 832, 1053, 1438, 2002, 4342 |
| ScaI | AGTACT | 1 cut(s) | 2878 |
| SchI | GAGTC | 6 cut(s) | 226, 528, 938, 2060, 2539, 4010 |
| ScrFI | CCNGG | 7 cut(s) | 694, 2006, 2327, 2488, 2632, 3389, 3570 |
| SduI | GDGCHC | 4 cut(s) | 184, 1324, 1807, 2275 |
| SfcI | CTRYAG | 8 cut(s) | 879, 1028, 1808, 2370, 2789, 3279, 3312, 3516 |
| SfoI | GGCGCC | 1 cut(s) | 4156 |
| SfuI | TTCGAA | 1 cut(s) | 777 |
| SinI | GGWCC | 2 cut(s) | 832, 2002 |
| SmiI | ATTTAAAT | 1 cut(s) | 2893 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 36, 1584, 2124, 3209, 3627, 3717, 4220 |
| SmlI | CTYRAG | 1 cut(s) | 3681 |
| SmoI | CTYRAG | 1 cut(s) | 3681 |
| SnaBI | TACGTA | 1 cut(s) | 1868 |
| SpeI | ACTAGT | 2 cut(s) | 527, 1292 |
| SphI | GCATGC | 1 cut(s) | 2931 |
| SsiI | CCGC | 8 cut(s) | 569, 985, 1010, 1368, 3356, 3650, 3858, 4158 |
| SspDI | GGCGCC | 1 cut(s) | 4154 |
| SspI | AATATT | 1 cut(s) | 1102 |
| StyD4I | CCNGG | 7 cut(s) | 692, 2004, 2325, 2486, 2630, 3387, 3568 |
| StyI | CCWWGG | 4 cut(s) | 768, 2451, 3693, 4188 |
| SwaI | ATTTAAAT | 1 cut(s) | 2893 |
| TaiI | ACGT | 3 cut(s) | 1870, 2054, 3256 |
| TaqI | TCGA | 8 cut(s) | 501, 777, 1907, 2064, 2236, 3189, 3376, 4146 |
| TatI | WGTACW | 1 cut(s) | 2876 |
| TauI | GCSGC | 2 cut(s) | 3358, 4160 |
| TseFI | GTSAC | 7 cut(s) | 211, 218, 343, 520, 581, 718, 3409 |
| TseI | GCWGC | 8 cut(s) | 878, 1027, 1136, 2808, 3278, 3464, 4198, 4396 |
| Tsp45I | GTSAC | 7 cut(s) | 211, 218, 343, 520, 581, 718, 3409 |
| TspGWI | ACGGA | 3 cut(s) | 3971, 3983, 3994 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 981 |
| VpaK11BI | GGWCC | 2 cut(s) | 832, 2002 |
| VspI | ATTAAT | 2 cut(s) | 2115, 3033 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 399 |
| XapI | RAATTY | 6 cut(s) | 272, 1666, 2012, 3259, 3764, 4078 |
| XbaI | TCTAGA | 2 cut(s) | 2159, 2246 |
| XceI | RCATGY | 4 cut(s) | 554, 755, 2931, 4435 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2081, 3475 |
| ZraI | GACGTC | 1 cut(s) | 2052 |
| ZrmI | AGTACT | 1 cut(s) | 2878 |
| Zsp2I | ATGCAT | 3 cut(s) | 2933, 2950, 3077 |