Rroxscaffold_1G00048980

presynapse organization

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
69102302 .. 69115648
13347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048980.1

Sequence Viewer

Length: 4137 bp
ATGTCTAACTGCGCCCGTTACCCAGTGTTCCAATTTTGGAATGTCATTATGATTTTTAGCATGTTTGTGTTCTATTTTGGGGTTAAGATGCAGGGTGCTTCAGTGATTCGAAGTAAATTTAAGCTTATATTAGAGCAGATAAGGAATGATAAGGAAGAGACTGTGGATAAAGTGGTGTTGCAGTTACTAGAGATGTTTCTCAGCAAAGAAATTGAGGATCTCCATGATGATGACTTTGAGGGATCCAAAACTGAGCACTGTATATTCACAGAGGTTTTCTTTGGTGGTGATGGTGCTAGCACGAGTAAGAGATGTCTTGTAACTGGAGTGATTAACTTTGAATGTGAGTCAAGTAAGACCACAGATACATCACTCTCTTCAAACAGTGAAAACTCAATTGTAACAAATCAGTCAAACTCTAAAAATACTTGTTTGGAGGAGTTTTATAATGCTACTGAGGAATCTAGAGAAATTTTTGGACCAGGGTTTTTCCCGGACAGATCCGCTTGGCTAGATACGAATGGCGAAGATGTGAGTGCTAAGAGAATGAAGTTTTCAGTTGATGAACTTCCTAGTGCAAAACCTGGTTTAGGAAAGGTAATAGATTTGTCCATAGTTTCAAAAGAAATGGTTTCTGGCTTGTCTGTTACTACAGACTCCATTACTGAAACAGTGACATTTCGTTTGGTCGAGTCTTCGAGTGAGGGAGTTACATCTAGTTGCTATCTGTTAAAGCAGCCTGCAAAAATTGACAGAGGGGCCATAGTAGGTGACTCTGATGTTTCAAAGTGCAGATTACCAACTTCTGATGGGAATGATGGAAAGGAACTATGTGCAAGTAAAGCTGTTGCTTCACCTGTTTCCCAGGAGAGCTTCTCAACCATGCTTTTGGCTACAGGTTCCCCTGTCACTCTATTGGATAAGTTGGGAACTCCGTTAGGTGCTGAGGGAAAACCCCAGGGGTTGGATAGAATAGCCTTCAAGAAAGACTCTAGTAAGGATCCTCGTCCGCTTCTCCAGTATGATGTCAATCGCTTACTTGAAGCTGCAGGATGGCATATTCAGAGGCGGAAAAGACCTAGTAGAGCTTATATGGAGTCTGTTTATGTAACACCAAAAGGAAGGTTAATTCGTGACTTCCCCAAAGCTTGGCGGTTGTGTGGTGAACTTTTGTTTGCAGATAGGTGCAGTTTGCTGCAGAGAGATGATGCAAAGGAATGGTCCAATATTAATCAGTTTTGGTCAGATCTATCTGGTGCTTTAGTAAATTTTGAGAAAGAGATGAATCAACCAGAGCCTGCTACTGAATTGGCTTGTTGGTGGAGGCTCTTAGATCCCTTTGTGATTGTTGTGTTTATTGAGAGAAAGATTCTTGCTCTGAGAAAAGGAGAGACTGTTAAAGCAACTCAAAGTTTAGCTATTAATACTAATCATAAGGTTTTGGCCTTGACTAATGCGAATAGTGTCAACAATCATCTGGAGAAGGAAAATGTTTCTGCTCCCCTCTGTGATACAAATCTGGCAGGAGGGAGTGGATCGGCAGTTTCTGAGGGGAATGTTATGGAAGATGTATCGGTGGTTTGTTCTGAGGAAAGAGATGAACTGCTGGGAGGCATGGCTTACGATAAGCTGGGAGATAATCTGCAGGGGTCTCTGGAGTACCAAACAAAATGCGCAAGTAATGTTGTTTTGAAAAAGAAAATAAGAAGGAAGTGTAAAAAGATTTCTGAAATGGAACCAAGCTCCACTTCTTGTAATAATATTGGTTTGCAATTCATTGATGTCAGTGGTAACCAGTCAAAGTTGAAAGAGGTCGATGGCAACCTTGCAGGCAATAAAAGAGGTAAAGGAAGTTGCAAGAAGTCCTCATCTCTCAACTCCTCCCAGCATGTGGTTGGTGAAAAAAGCCCAAAGTCTATGAAAAATGTTCGTGAATATGATGATTTTAAAACTGGAAAGAAGAAACCATCTAGATGTGAAATCAAAGATGATGACTTACTGGTTTCAGCTATCATAAAGAACACAGATTTTAGTGCAAGTCCTGGTCGATGTTCTTCTAGAAAGAAAGGCCGCAAATCTAGAGCTCATAGGAAGCATAAAAGTCAAAAGAGCCATTGCAAGTTGCTTCTTAGAAGCCTGGGTAGTGTAGGAGTAAAAACAGTTCTGTCTTGGATGCTTGATGCTGGGGTCATATTTCTGGATGATGTGATCCAGTATCGGAATACTAAGGATGGTTCTGTTATTAAAGATGGTCTAGTTACCAGGGATGGTATTTTTTGCAAGTGTTGCAGTGAAGTACTTACAGTTTCTGAGTTCAAGATTCATGGTGGGTTCAGACTAAACCGTCCATGTTTAAATCTTTTTCTGGAATCTGGTAAGGCCTTCTCCTTATGCCAGCTTCAAGCCTGGTCAGCTGAATACAAGTCCAGGAAACGGCGGACTCAAGTGGTGCGAGCTGATGAAAATGATGAAAATGATGATTCTTGCGGACTTTGTGGTGAAGGGGGCGAGCTGATATGCTGTGATAACTGTCCCTCTACTTTTCATCAGGCTTGTTTGTCTCTACAGTGGATCACTGATTTGGGAAAAACAGTCTGTACAATGATCACCAGTGTACTTGTGTTGAGTATTCAGGGGAGCTTCCTGAAGGCAGCTGGTATTGTCCAAATTGCACCTGTTGGATATGTGGTCATTTTGTTTCCGACAAAAGGGGCTTCAAGTGCTTCTGATGGATTTAAATGTTCGCAGTGTGAGCATAAATACATGGTAACTGATATTGTGTACAATGGTGAAGATGATCATGAGGCTTGTCTGAAAGAAAAATCCATACGTGTACTGGATTCTTGGTTCTGTGAAAGAAGCTGTCAAGAGGTTTACTCAGGTCTTCAGTCTCATGTTGGCTACATTAATCATGTTGTCGATGGCTTTTCATGGACACTTCTTAGATGCATTCGTGATGACCAAAAAGTTCATTCTGCCCAACGGTTAGCACTGAAAGCAGAATGCAATACAAGATTAGCTGTTGCTCTTACTGTCATGGAAGAAAGCTTTATGTCTATGGTGGATCCTAGAACAGGCATAGACATGATACCCCAAGTTTTGTACAGTTGGGGGTCAGAGTTTGCTCGTTTGAATTTTCAAGGCTTCTACACTGCAGTCTTAGAGAAAGATGATGTGCTGATATCTGTAGCATCCATCAGGGTGCATGGAACAACAGTTGCAGAGATGCCACTTATTGCAACTTGCAGTCGATACCGTCGCCAGGGAATGTGCCGACGCCTTCTGACTGCTATTGAAGAGATGCTGATATCTTTTAAGGTGGAAAAGCTTGTAATAGCTGCCATTCCAGATTTGGTGGGGACATGGACAGAGGGTTTTGGCTTTATACCTGTGGAAGACAGAGAAAAGCAAAGCTTGAACAAGATCAATTTGATGGTTTTTCCTGGAACGGTTTTACTCAAGAAGCCATTATGTGAAAATAAAACAGCATATAGACATCCTGGAACATGTCATACATCATCCTTGGAAACGGGAGGATTGAGAAAAGAATGTTGTTCTGAAGAAGAGCCCATGGTTGAGTTTGTGCACTCTGATGGAAACAAAACTGGTGCTGAAGCAGGAATTGAATTTGTAGAAGGTACTAATTTAGAAGACTGTGATGATGGTAGTAAATTATTTATTACTGCTGATACTGGACCCGTTGGTACATCACAAGGAAAAAACAAAGCAACTGAGGTAGGCATTCAATCCAGAGATGCCATTGTTGGGTTTGTACAGCGACACGTTGTCCAGTGTTCTGCTAACAAAGCTGGTGCTGAAATGGAAGATGTCAAGCAATCAAAAATCTGTTGCCAGATCAAAGTAGGCAATGAATCAGAAATAAGGCAGGTGACCGGCAAGGATTTGCCGGAATCTGAAGTCGGCAGTGAACCAGAAGGTAGAGTTTTTGAAAGCAGTCTTATGCAAGTGGGTGAAGCCAAAAGAAGTACTTTGCAGGAGCAATTTTTAAAGCTGTCTTGTGAAGAGCCAGCTTCAGCAGTAGAAAATAGCAAGCCGGAAACGGTTACTAATGTTGTTGAATCCTTGGAAATGTATGATGAAACACAGCTTTCTCTGGATGAACAATCGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005911 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009506 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016581 GO:0016740 GO:0016746 GO:0016747 GO:0017053 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030054 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0032993 GO:0034212 GO:0034641 GO:0036211 GO:0042393 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043966 GO:0043971 GO:0043972 GO:0044030 GO:0044154 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061733 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0072553 GO:0080090 GO:0080188 GO:0090304 GO:0090545 GO:0090568 GO:0097159 GO:0099172 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1378

Amino Acids

152.36

Weight (kDa)

5.95

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 751 - 801 1.6e-15 Tify domain binding domain
IDM1_C PF23209 1017 - 1156 1.5e-58 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AarI CACCTGC 1 cut(s) 3877
AasI GACNNNNNNGTC 1 cut(s) 2343
Acc16I TGCGCA 1 cut(s) 1675
Acc36I ACCTGC 1 cut(s) 3877
AccB7I CCANNNNNTGG 3 cut(s) 964, 1149, 1891
AciI CCGC 7 cut(s) 504, 1010, 1069, 1153, 2071, 2437, 2487
AcsI RAATTY 5 cut(s) 116, 471, 1267, 3133, 3626
AcuI CTGAAG 7 cut(s) 84, 2666, 2870, 3579, 3633, 3936, 4017
AcyI GRCGYC 1 cut(s) 3277
AfiI CCNNNNNNNGG 9 cut(s) 590, 964, 1149, 1891, 2433, 2708, 3074, 3262, 3765
AflIII ACRYGT 3 cut(s) 2830, 3506, 3781
AhdI GACNNNNNGTC 1 cut(s) 3785
AjuI GAANNNNNNNTTGG 2 cut(s) 1732, 1764
AloI GAACNNNNNNTCC 2 cut(s) 2831, 2863
Alw21I GWGCWC 3 cut(s) 258, 2086, 3588
Alw26I GTCTC 5 cut(s) 152, 1385, 1656, 2565, 2895
Alw44I GTGCAC 1 cut(s) 3584
AlwNI CAGNNNCTG 3 cut(s) 1298, 1547, 2309
AoxI GGCC 4 cut(s) 759, 1443, 2068, 2379
ApaLI GTGCAC 1 cut(s) 3584
ApeKI GCWGC 5 cut(s) 736, 1046, 1195, 2651, 3338
ApoI RAATTY 5 cut(s) 116, 471, 1267, 3133, 3626
ArsI GACNNNNNNTTYG 4 cut(s) 667, 699, 1205, 1237
AseI ATTAAT 3 cut(s) 1230, 1422, 2907
AspLEI GCGC 2 cut(s) 14, 1676
AspS9I GGNCC 4 cut(s) 479, 759, 1221, 3695
AsuC2I CCSGG 1 cut(s) 494
AsuII TTCGAA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 3 cut(s) 479, 1221, 3695
BaeGI GKGCMC 1 cut(s) 3588
BamHI GGATCC 3 cut(s) 242, 1000, 3064
BanII GRGCYC 2 cut(s) 2086, 3570
BauI CACGAG 1 cut(s) 301
BbsI GAAGAC 4 cut(s) 687, 2876, 3402, 3657
Bbv12I GWGCWC 3 cut(s) 258, 2086, 3588
BbvCI CCTCAGC 1 cut(s) 945
BbvI GCAGC 5 cut(s) 748, 1033, 1182, 2663, 3325
BceAI ACGGC 1 cut(s) 2450
BclI TGATCA 2 cut(s) 2604, 2797
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 5 cut(s) 152, 1385, 1656, 2565, 2895
BfmI CTRYAG 8 cut(s) 651, 894, 1047, 1196, 1643, 2564, 3153, 3186
BfuAI ACCTGC 1 cut(s) 3877
BglII AGATCT 1 cut(s) 1246
BisI GCNGC 6 cut(s) 737, 1047, 1196, 2071, 2652, 3339
BlsI GCNGC 6 cut(s) 738, 1048, 1197, 2072, 2653, 3340
BmcAI AGTACT 2 cut(s) 2298, 3988
Bme18I GGWCC 3 cut(s) 479, 1221, 3695
BmeRI GACNNNNNGTC 1 cut(s) 3785
BmgT120I GGNCC 4 cut(s) 479, 759, 1221, 3695
BmiI GGNNCC 7 cut(s) 244, 760, 901, 1002, 1737, 3066, 3697
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 9 cut(s) 78, 1198, 2163, 2170, 2936, 3200, 3216, 3291, 3745
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 17
BpiI GAAGAC 4 cut(s) 687, 2876, 3402, 3657
BplI GAGNNNNNCTC 4 cut(s) 860, 892, 2861, 2893
BpmI CTGGAG 4 cut(s) 345, 1001, 1499, 1676
Bpu10I CCTNAGC 1 cut(s) 945
Bpu14I TTCGAA 1 cut(s) 109
BpuEI CTTGAG 2 cut(s) 2427, 3443
BpuMI CCSGG 1 cut(s) 494
BsaAI YACGTR 1 cut(s) 2831
BsaBI GATNNNNATC 2 cut(s) 1029, 1515
BsaHI GRCGYC 1 cut(s) 3277
BsaI GGTCTC 1 cut(s) 1656
BsaXI ACNNNNNCTCC 2 cut(s) 1380, 1410
Bsc4I CCNNNNNNNGG 9 cut(s) 590, 964, 1149, 1891, 2433, 2708, 3074, 3262, 3765
Bse118I RCCGGY 1 cut(s) 3893
Bse3DI GCAATG 2 cut(s) 2113, 3874
Bse8I GATNNNNATC 2 cut(s) 1029, 1515
BseGI GGATG 9 cut(s) 1058, 2178, 2206, 2236, 2272, 3191, 3496, 3518, 4123
BseJI GATNNNNATC 2 cut(s) 1029, 1515
BseLI CCNNNNNNNGG 9 cut(s) 590, 964, 1149, 1891, 2433, 2708, 3074, 3262, 3765
BseMI GCAATG 2 cut(s) 2113, 3874
BseRI GAGGAG 2 cut(s) 452, 1870
BseSI GKGCMC 1 cut(s) 3588
BseXI GCAGC 5 cut(s) 748, 1033, 1182, 2663, 3325
BseYI CCCAGC 4 cut(s) 1606, 1630, 1884, 2183
BsgI GTGCAG 2 cut(s) 811, 1207
BshFI GGCC 4 cut(s) 761, 1445, 2070, 2381
BsiHKAI GWGCWC 3 cut(s) 258, 2086, 3588
BsiSI CCGG 4 cut(s) 494, 3894, 3908, 4055
BslFI GGGAC 2 cut(s) 2517, 3373
BslI CCNNNNNNNGG 9 cut(s) 590, 964, 1149, 1891, 2433, 2708, 3074, 3262, 3765
BsmAI GTCTC 5 cut(s) 152, 1385, 1656, 2565, 2895
BsmFI GGGAC 2 cut(s) 2517, 3373
BsmI GAATGC 3 cut(s) 2949, 3008, 3741
BsnI GGCC 4 cut(s) 761, 1445, 2070, 2381
Bso31I GGTCTC 1 cut(s) 1656
Bsp119I TTCGAA 1 cut(s) 109
Bsp1286I GDGCHC 4 cut(s) 258, 2086, 3570, 3588
Bsp1407I TGTACA 4 cut(s) 2597, 2781, 3102, 3772
Bsp19I CCATGG 1 cut(s) 3570
BspACI CCGC 7 cut(s) 504, 1010, 1069, 1153, 2071, 2437, 2487
BspANI GGCC 4 cut(s) 761, 1445, 2070, 2381
BspHI TCATGA 1 cut(s) 2800
BspLI GGNNCC 7 cut(s) 244, 760, 901, 1002, 1737, 3066, 3697
BspMAI CTGCAG 4 cut(s) 1051, 1200, 1647, 3157
BspMI ACCTGC 1 cut(s) 3877
BspOI GCTAGC 1 cut(s) 300
BspQI GCTCTTC 2 cut(s) 3558, 4017
BspT104I TTCGAA 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 1656
BsrDI GCAATG 2 cut(s) 2113, 3874
BsrFI RCCGGY 1 cut(s) 3893
BsrGI TGTACA 4 cut(s) 2597, 2781, 3102, 3772
BssAI RCCGGY 1 cut(s) 3893
BssNI GRCGYC 1 cut(s) 3277
BssSI CACGAG 1 cut(s) 301
BssT1I CCWWGG 3 cut(s) 3522, 3570, 4083
Bst2BI CACGAG 1 cut(s) 301
Bst6I CTCTTC 5 cut(s) 150, 382, 3291, 3558, 4017
BstACI GRCGYC 1 cut(s) 3277
BstAPI GCANNNNNTGC 1 cut(s) 2286
BstAUI TGTACA 4 cut(s) 2597, 2781, 3102, 3772
BstBAI YACGTR 1 cut(s) 2831
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 9 cut(s) 298, 741, 1299, 1831, 2396, 2454, 2510, 4029, 4052
BstDSI CCRYGG 1 cut(s) 3570
BstEII GGTNACC 2 cut(s) 1790, 3889
BstENI CCTNNNNNAGG 2 cut(s) 588, 3072
BstF5I GGATG 9 cut(s) 1058, 2178, 2206, 2236, 2272, 3191, 3496, 3518, 4123
BstHHI GCGC 2 cut(s) 14, 1676
BstMAI GTCTC 5 cut(s) 152, 1385, 1656, 2565, 2895
BstMWI GCNNNNNNNGC 7 cut(s) 842, 2286, 2411, 2720, 2752, 2996, 3806
BstNSI RCATGY 3 cut(s) 64, 1892, 3510
BstPI GGTNACC 2 cut(s) 1790, 3889
BstSFI CTRYAG 8 cut(s) 651, 894, 1047, 1196, 1643, 2564, 3153, 3186
BstSLI GKGCMC 1 cut(s) 3588
BstV1I GCAGC 5 cut(s) 748, 1033, 1182, 2663, 3325
BstV2I GAAGAC 4 cut(s) 687, 2876, 3402, 3657
BstX2I RGATCY 7 cut(s) 217, 242, 500, 1000, 1246, 1333, 3064
BstXI CCANNNNNNTGG 1 cut(s) 889
BstYI RGATCY 7 cut(s) 217, 242, 500, 1000, 1246, 1333, 3064
BsuRI GGCC 4 cut(s) 761, 1445, 2070, 2381
BtgI CCRYGG 1 cut(s) 3570
BtsCI GGATG 9 cut(s) 1058, 2178, 2206, 2236, 2272, 3191, 3496, 3518, 4123
BtsI GCAGTG 4 cut(s) 2296, 2753, 3150, 3931
BveI ACCTGC 1 cut(s) 3877
Cac8I GCNNGC 9 cut(s) 298, 741, 1299, 1831, 2396, 2454, 2510, 4029, 4052
CaiI CAGNNNCTG 3 cut(s) 1298, 1547, 2309
CciI TCATGA 1 cut(s) 2800
CfoI GCGC 2 cut(s) 14, 1676
Cfr10I RCCGGY 1 cut(s) 3893
Cfr13I GGNCC 4 cut(s) 479, 759, 1221, 3695
CseI GACGC 1 cut(s) 3285
CsiI ACCWGGT 1 cut(s) 583
DraI TTTAAA 4 cut(s) 1948, 2355, 2737, 4008
DrdI GACNNNNNNGTC 1 cut(s) 2343
DriI GACNNNNNGTC 1 cut(s) 3785
DseDI GACNNNNNNGTC 1 cut(s) 2343
Eam1104I CTCTTC 5 cut(s) 150, 382, 3291, 3558, 4017
Eam1105I GACNNNNNGTC 1 cut(s) 3785
EarI CTCTTC 5 cut(s) 150, 382, 3291, 3558, 4017
EciI GGCGGA 2 cut(s) 1084, 2452
Ecl136II GAGCTC 1 cut(s) 2084
Eco130I CCWWGG 3 cut(s) 3522, 3570, 4083
Eco147I AGGCCT 1 cut(s) 2381
Eco24I GRGCYC 2 cut(s) 2086, 3570
Eco31I GGTCTC 1 cut(s) 1656
Eco32I GATATC 2 cut(s) 3183, 3309
Eco47I GGWCC 3 cut(s) 479, 1221, 3695
Eco53kI GAGCTC 1 cut(s) 2084
Eco57I CTGAAG 7 cut(s) 84, 2666, 2870, 3579, 3633, 3936, 4017
Eco91I GGTNACC 2 cut(s) 1790, 3889
EcoICRI GAGCTC 1 cut(s) 2084
EcoNI CCTNNNNNAGG 2 cut(s) 588, 3072
EcoO65I GGTNACC 2 cut(s) 1790, 3889
EcoRV GATATC 2 cut(s) 3183, 3309
EcoT14I CCWWGG 3 cut(s) 3522, 3570, 4083
EcoT22I ATGCAT 1 cut(s) 2951
EcoT38I GRGCYC 2 cut(s) 2086, 3570
ErhI CCWWGG 3 cut(s) 3522, 3570, 4083
FalI AAGNNNNNCTT 6 cut(s) 1732, 1764, 3398, 3430, 3973, 4005
FaqI GGGAC 2 cut(s) 2517, 3373
FbaI TGATCA 2 cut(s) 2604, 2797
Fnu4HI GCNGC 6 cut(s) 737, 1047, 1196, 2071, 2652, 3339
FokI GGATG 9 cut(s) 1065, 2185, 2213, 2243, 2279, 3178, 3483, 3505, 4130
FriOI GRGCYC 2 cut(s) 2086, 3570
Fsp4HI GCNGC 6 cut(s) 737, 1047, 1196, 2071, 2652, 3339
FspI TGCGCA 1 cut(s) 1675
GlaI GCGC 2 cut(s) 13, 1675
GluI GCNGC 6 cut(s) 737, 1047, 1196, 2071, 2652, 3339
GsaI CCCAGC 4 cut(s) 1610, 1634, 1888, 2187
GsuI CTGGAG 4 cut(s) 345, 1001, 1499, 1676
HaeIII GGCC 4 cut(s) 761, 1445, 2070, 2381
HapII CCGG 4 cut(s) 494, 3894, 3908, 4055
HgaI GACGC 1 cut(s) 3285
HhaI GCGC 2 cut(s) 14, 1676
Hin1I GRCGYC 1 cut(s) 3277
Hin6I GCGC 2 cut(s) 12, 1674
HinP1I GCGC 2 cut(s) 12, 1674
HincII GTYRAC 1 cut(s) 1468
HindII GTYRAC 1 cut(s) 1468
HindIII AAGCTT 5 cut(s) 122, 1146, 3046, 3326, 3412
HpaII CCGG 4 cut(s) 494, 3894, 3908, 4055
Hpy166II GTNNAC 8 cut(s) 1166, 1468, 2615, 2782, 2834, 2875, 3586, 3929
Hpy8I GTNNAC 8 cut(s) 1166, 1468, 2615, 2782, 2834, 2875, 3586, 3929
Hpy99I CGWCG 2 cut(s) 3261, 3279
HpyCH4IV ACGT 2 cut(s) 2830, 3783
HpyF10VI GCNNNNNNNGC 7 cut(s) 842, 2286, 2411, 2720, 2752, 2996, 3806
HpySE526I ACGT 2 cut(s) 2830, 3783
Hsp92I GRCGYC 1 cut(s) 3277
HspAI GCGC 2 cut(s) 12, 1674
Ksp22I TGATCA 2 cut(s) 2604, 2797
LguI GCTCTTC 2 cut(s) 3558, 4017
LmnI GCTCC 4 cut(s) 1504, 1748, 2637, 3997
Lsp1109I GCAGC 5 cut(s) 748, 1033, 1182, 2663, 3325
LweI GCATC 9 cut(s) 78, 1198, 2163, 2170, 2936, 3200, 3216, 3291, 3745
MabI ACCWGGT 1 cut(s) 583
MaeII ACGT 2 cut(s) 2830, 3783
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 7 cut(s) 217, 242, 500, 1000, 1246, 1333, 3064
MhlI GDGCHC 4 cut(s) 258, 2086, 3570, 3588
MlyI GAGTC 7 cut(s) 356, 650, 701, 767, 983, 1106, 2434
MmeI TCCRAC 3 cut(s) 945, 2659, 2726
Mph1103I ATGCAT 1 cut(s) 2951
MslI CAYNNNNRTG 6 cut(s) 65, 228, 1972, 3083, 3200, 3591
MspA1I CMGCKG 2 cut(s) 2414, 2654
MspI CCGG 4 cut(s) 494, 3894, 3908, 4055
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 3 cut(s) 2949, 3008, 3741
MwoI GCNNNNNNNGC 7 cut(s) 842, 2286, 2411, 2720, 2752, 2996, 3806
NciI CCSGG 1 cut(s) 494
NcoI CCATGG 1 cut(s) 3570
NheI GCTAGC 1 cut(s) 296
NlaIV GGNNCC 7 cut(s) 244, 760, 901, 1002, 1737, 3066, 3697
NmuCI GTSAC 5 cut(s) 673, 770, 907, 1133, 3889
NsbI TGCGCA 1 cut(s) 1675
NsiI ATGCAT 1 cut(s) 2951
NspI RCATGY 3 cut(s) 64, 1892, 3510
NspV TTCGAA 1 cut(s) 109
PagI TCATGA 1 cut(s) 2800
PaqCI CACCTGC 1 cut(s) 3877
PasI CCCWGGG 1 cut(s) 958
PceI AGGCCT 1 cut(s) 2381
PciI ACATGT 1 cut(s) 3506
PciSI GCTCTTC 2 cut(s) 3558, 4017
PctI GAATGC 3 cut(s) 2949, 3008, 3741
PflMI CCANNNNNTGG 3 cut(s) 964, 1149, 1891
PfoI TCCNGGA 4 cut(s) 492, 2426, 3442, 3499
PkrI GCNGC 6 cut(s) 738, 1048, 1197, 2072, 2653, 3340
PleI GAGTC 7 cut(s) 355, 650, 700, 767, 983, 1105, 2434
PpsI GAGTC 7 cut(s) 355, 650, 700, 767, 983, 1105, 2434
Ppu21I YACGTR 1 cut(s) 2831
PscI ACATGT 1 cut(s) 3506
PshBI ATTAAT 3 cut(s) 1230, 1422, 2907
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 2086
PspEI GGTNACC 2 cut(s) 1790, 3889
PspFI CCCAGC 4 cut(s) 1606, 1630, 1884, 2183
PspN4I GGNNCC 7 cut(s) 244, 760, 901, 1002, 1737, 3066, 3697
PspPI GGNCC 4 cut(s) 479, 759, 1221, 3695
PsrI GAACNNNNNNTAC 4 cut(s) 2145, 2177, 3496, 3528
PstI CTGCAG 4 cut(s) 1051, 1200, 1647, 3157
PstNI CAGNNNCTG 3 cut(s) 1298, 1547, 2309
PsuI RGATCY 7 cut(s) 217, 242, 500, 1000, 1246, 1333, 3064
PvuII CAGCTG 2 cut(s) 2414, 2654
RseI CAYNNNNRTG 6 cut(s) 65, 228, 1972, 3083, 3200, 3591
SacI GAGCTC 1 cut(s) 2086
SapI GCTCTTC 2 cut(s) 3558, 4017
SatI GCNGC 6 cut(s) 737, 1047, 1196, 2071, 2652, 3339
Sau96I GGNCC 4 cut(s) 479, 759, 1221, 3695
ScaI AGTACT 2 cut(s) 2298, 3988
SchI GAGTC 7 cut(s) 356, 650, 701, 767, 983, 1106, 2434
SduI GDGCHC 4 cut(s) 258, 2086, 3570, 3588
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 9 cut(s) 78, 1198, 2163, 2170, 2936, 3200, 3216, 3291, 3745
SfcI CTRYAG 8 cut(s) 651, 894, 1047, 1196, 1643, 2564, 3153, 3186
SfuI TTCGAA 1 cut(s) 109
SinI GGWCC 3 cut(s) 479, 1221, 3695
SmiI ATTTAAAT 1 cut(s) 2737
SmiMI CAYNNNNRTG 6 cut(s) 65, 228, 1972, 3083, 3200, 3591
SmlI CTYRAG 2 cut(s) 2442, 3458
SmoI CTYRAG 2 cut(s) 2442, 3458
SseBI AGGCCT 1 cut(s) 2381
SsiI CCGC 7 cut(s) 504, 1010, 1069, 1153, 2071, 2437, 2487
SspI AATATT 2 cut(s) 1228, 1762
SstI GAGCTC 1 cut(s) 2086
StuI AGGCCT 1 cut(s) 2381
StyI CCWWGG 3 cut(s) 3522, 3570, 4083
SwaI ATTTAAAT 1 cut(s) 2737
TaiI ACGT 2 cut(s) 2833, 3786
TaqI TCGA 7 cut(s) 109, 690, 698, 1815, 2047, 2919, 3250
TatI WGTACW 8 cut(s) 2296, 2597, 2614, 2781, 2833, 3102, 3772, 3986
TauI GCSGC 1 cut(s) 2073
TseFI GTSAC 5 cut(s) 673, 770, 907, 1133, 3889
TseI GCWGC 5 cut(s) 736, 1046, 1195, 2651, 3338
Tsp45I GTSAC 5 cut(s) 673, 770, 907, 1133, 3889
TspGWI ACGGA 1 cut(s) 924
Van91I CCANNNNNTGG 3 cut(s) 964, 1149, 1891
VneI GTGCAC 1 cut(s) 3584
VpaK11BI GGWCC 3 cut(s) 479, 1221, 3695
VspI ATTAAT 3 cut(s) 1230, 1422, 2907
XagI CCTNNNNNAGG 2 cut(s) 588, 3072
XapI RAATTY 5 cut(s) 116, 471, 1267, 3133, 3626
XbaI TCTAGA 4 cut(s) 464, 1970, 2057, 2078
XceI RCATGY 3 cut(s) 64, 1892, 3510
XcmI CCANNNNNNNNNTGG 3 cut(s) 1892, 2833, 3349
ZrmI AGTACT 2 cut(s) 2298, 3988
Zsp2I ATGCAT 1 cut(s) 2951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.