Rmu_co8157186.1_g000001

presynapse organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8157186.1
OG0005139
Physical Location & Seq
Forward (+)
24 .. 658
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8157186.1_g000001.1.cds

Sequence Viewer

Length: 635 bp
atgaatcaaccagaacctgctactgaattggcttattggtggaggctcttagatccctttgtgattgttgtgtttattgagagaaagattcttgctctgagaaaaggagagactgttaaagcaactcaaagtttagctattaatactaatcataaggttttggccttgactaatgcgaatagtatcaaaaatcatctggagaaggaagatgtttctgctcccctctgtgatacaactctggcaggagggagtggatcggcagtttctgaggggaatgttatggaagatgtatcggtggtttgttctgaggaaagagatgaactgctgggaggcatgacttacgataggctgggagataatctgcaggggtctctggagtaccaaataaaatgcacaagtaatgttgttttgaaaaagaaaataagaaggaagtgtaaaaagatttctgaaatggaaccaagctccacttctagtaataatattggtttgcaatgcattgatgtcagtggtaaccagtcaaagatgaaagaggtcgatggcgaccttgcaggcaataaaagaagtaaaggaagttgcaagaagtcctcatctctcaactcctcccagcatgtggttggtgaaaaaagcccaaagtc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005911 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009506 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016581 GO:0016740 GO:0016746 GO:0016747 GO:0017053 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030054 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0032993 GO:0034212 GO:0034641 GO:0036211 GO:0042393 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043966 GO:0043971 GO:0043972 GO:0044030 GO:0044154 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061733 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0072553 GO:0080090 GO:0080188 GO:0090304 GO:0090545 GO:0090568 GO:0097159 GO:0099172 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

212

Amino Acids

23.09

Weight (kDa)

8.47

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 610
AclWI GGATC 2 cut(s) 47, 262
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AluBI AGCT 2 cut(s) 137, 462
AluI AGCT 2 cut(s) 137, 462
Alw26I GTCTC 2 cut(s) 104, 375
AlwI GGATC 2 cut(s) 47, 262
AlwNI CAGNNNCTG 2 cut(s) 17, 266
AoxI GGCC 1 cut(s) 162
AseI ATTAAT 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 629
BccI CCATC 1 cut(s) 530
BcoDI GTCTC 2 cut(s) 104, 375
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 456
BpmI CTGGAG 2 cut(s) 218, 395
BsaI GGTCTC 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 497
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 3 cut(s) 89, 258, 297
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 1 cut(s) 589
BseYI CCCAGC 3 cut(s) 325, 349, 603
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 2 cut(s) 104, 375
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 52, 254
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 90, 259, 298
BspLI GGNNCC 1 cut(s) 456
BspMAI CTGCAG 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 2 cut(s) 47, 262
BspTNI GGTCTC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 497
BsrI ACTGG 1 cut(s) 514
BssMI GATC 2 cut(s) 52, 254
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 4 cut(s) 49, 98, 267, 306
BstEII GGTNACC 1 cut(s) 509
BstKTI GATC 2 cut(s) 55, 257
BstMAI GTCTC 2 cut(s) 104, 375
BstMBI GATC 2 cut(s) 52, 254
BstNSI RCATGY 1 cut(s) 611
BstPI GGTNACC 1 cut(s) 509
BstSFI CTRYAG 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 511
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 550
CaiI CAGNNNCTG 2 cut(s) 17, 266
Csp6I GTAC 1 cut(s) 379
CviAII CATG 2 cut(s) 334, 608
CviJI RGCY 7 cut(s) 32, 46, 137, 164, 349, 462, 627
CviKI_1 RGCY 7 cut(s) 32, 46, 137, 164, 349, 462, 627
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 49, 98, 267, 306
DpnI GATC 2 cut(s) 54, 256
DpnII GATC 2 cut(s) 52, 254
Eco31I GGTCTC 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 509
EcoO65I GGTNACC 1 cut(s) 509
EcoT22I ATGCAT 1 cut(s) 497
FaeI CATG 2 cut(s) 337, 611
FaiI YATR 4 cut(s) 153, 281, 335, 609
FalI AAGNNNNNCTT 2 cut(s) 451, 483
FatI CATG 2 cut(s) 333, 607
FspBI CTAG 1 cut(s) 471
GsaI CCCAGC 3 cut(s) 329, 353, 607
GsuI CTGGAG 2 cut(s) 218, 395
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 2 cut(s) 337, 611
HinfI GANTC 2 cut(s) 4, 88
HphI GGTGA 1 cut(s) 629
Hpy188I TCNGA 4 cut(s) 99, 268, 307, 448
Hpy188III TCNNGA 2 cut(s) 197, 374
HpyAV CCTTC 2 cut(s) 196, 420
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 6 cut(s) 364, 393, 490, 495, 548, 576
HpyF3I CTNAG 4 cut(s) 49, 98, 267, 306
Hsp92II CATG 2 cut(s) 337, 611
Kzo9I GATC 2 cut(s) 52, 254
LmnI GCTCC 2 cut(s) 223, 467
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 509
MalI GATC 2 cut(s) 54, 256
MboI GATC 2 cut(s) 52, 254
MboII GAAGA 2 cut(s) 218, 296
MflI RGATCY 1 cut(s) 52
MluCI AATT 1 cut(s) 26
MnlI CCTC 9 cut(s) 36, 233, 239, 262, 301, 323, 523, 595, 610
Mph1103I ATGCAT 1 cut(s) 497
MseI TTAA 2 cut(s) 117, 141
NdeII GATC 2 cut(s) 52, 254
NlaIII CATG 2 cut(s) 337, 611
NlaIV GGNNCC 1 cut(s) 456
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 611
PfeI GAWTC 2 cut(s) 4, 88
PflMI CCANNNNNTGG 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 509
PspFI CCCAGC 3 cut(s) 325, 349, 603
PspN4I GGNNCC 1 cut(s) 456
PstI CTGCAG 1 cut(s) 366
PstNI CAGNNNCTG 2 cut(s) 17, 266
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 117, 141
Sau3AI GATC 2 cut(s) 52, 254
SetI ASST 6 cut(s) 19, 139, 159, 464, 534, 546
SfcI CTRYAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 26
SspI AATATT 1 cut(s) 481
SspMI CTAG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 534
TasI AATT 1 cut(s) 26
TfiI GAWTC 2 cut(s) 4, 88
Tru1I TTAA 2 cut(s) 117, 141
Tru9I TTAA 2 cut(s) 117, 141
TscAI CASTG 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 17, 333, 539
TspRI CASTG 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 610
VspI ATTAAT 1 cut(s) 141
XceI RCATGY 1 cut(s) 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.