Rw5G019870

presynapse organization

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
25894376 .. 25907346
12971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G019870.1

Sequence Viewer

Length: 3999 bp
ATGTTTCTCAGCAAAGAAATTGAGGATCTGCATGATGATGACTTTGAGGGATCCAAAACTGAGCACCATATATTCACAGAGGTTTTCTTTGGTGGTGACGGTGCTAGCACGAGTAAGAGATGTCTTGTAACTGGAGTGATTAACTTTGAATGTGAGTCAAGTAAGACCACAGATACATCACTCTCTTCAAACAGTGAAAACTCAATTGTAACGAATCAGTCAAACTCTAAAAATACTTGTGTGGAGGAGTTTTATAATGCTACTGAGGAATCTAGAGAAATTTTTGGACCAGGGTTTTTCCCGGACAGATCCGCTTGGCTAGATACGAATGGCGAAGATGTGAGTGCTAAGAGAATGAAGTTTTCAGTTGATGAACTTCCTAGTGCAAAACCTGGTTTAGGAAAGGTAATAGATTTGTCCATAGTTTCAAAAGAAATGGTTTCTGGCTTGTCTGTTACTACAGAATCCATTACTGAAACAGTGACATTTCGTTTGGTCGAGTCTTCGAGTGAGGGAGTTACATCTAGTTGCTATCTGTTAAAGCAGCCTGCAAAACTTGATAGAGGGGCCATAGTAGGTGACTCTGACGTTTCAAAGTGCAGATTACCAACTTCTGATGGGAATGATGGAAAGGAACTACGTGCAAGTAAAGCTGTTGCTTCACCTGTTTCCCAGGAGAGCTTCTCAACCATGCTTTTGGCTACAGGTTCCCCTGTCACTCTATTGGATAAGTTGGGAACTCCGCTAGGTGCTGAGGGAAAACCCGAGGGGTTGGATAGATCTGCTATTGCCTTCAAGAAAGACTCTAGTAAGGATCCTCGTCTGCTTCTCCAGTATGATGTCAATCGCTTACTTGAAGCTGCAGGATGGCATATTCAGAGGCGGAAAAGACCTAGTAGAGCTTATATGGAGTCTGTTTATGTAACACCAAAAGGAAGGTTAATTCGTGACTTCCCCAAAGCTTGGCGGTTGTGTGGTGAACTTTTGTTTGCAGATAGGTGCAGTTCGCTGCAGAGAGATGATGCAAAGGAATGGTCCAATATTAATCAGTTTTGGTCAGATCTATCTGGTGCTTTAGTAAATTTTGAGAAAGAGATGAATCAACCAGAACCTGCTACTGAATTGGATTATTGGTGGAGGCTCTTAGATCCCTTTGTGATTGTTGTGTTTATTGAGAGAAAGATTCTTGCTCTGAGAAAAGGAGAGACTGTTAAAGCAACTCAAAGTTTAGCTATTAATACTAATCATAAGGTTTTGGCCTTGACTAATGCGAATAGTATCAAAAATCATCTGGAGAAGGAAGATGTTTCTGCTCCCCTCTGTGATACAACTCTGGCAGGAGGGAGTGGATTGGCAGTTTCTGAGGGGAATGTTATGGAAGATGTATCGGTGGTTTGTTCTGAGGAAAGAGATGAACTGCTGGGAGGCATGACTTACGATAGGCTGGGAGATAATCTGCAGGGGTCTCTGGAGTACCAAATAAAATGCACAAGTAATGTTGTTTTGAAAAAGAAAATAAGAAGGAAGTGTAAAAAGATTTCTGAAATGGAACCAAGCTCCACTTCTAGTAATAATATTGGTTTGCAATGCATTGATGTCAGTGGTAACCAGTCAAAGTTGAAAGAGGTCGATGGTGACCTTGCAGGCAATAAAAGAAGTAAAGGAAGTTGCAAGAAGTCCTCATCTCTCAACTCCTCCCAGCATGTGGTTGGTGAAAAAAGCCCAAAGTCTGTGAAAAATGTTCGTGAATATGATGATTTTAAAACTGGAAAGAAGAAACCATCTAGATGTGAAATCAAAGATGATGACTTACTGGTTTCAGCTATCATAAAGAACACAGATTTTAGTGCAAGTCCTGGTCGATGTTCTTCTAGAAAGAAAGGCTGCAAATCTAGAGCTCATAGGAAGCATAAAAGTCAAAAGAGCCATTGCAAGTTGCTTCTTAGAAGCCTGGGTAGTGTAGGAGTAAAAACAGTTCTGTCTTGGATGCTTGATGCTGGGGTCATATTTCTGGATGATGTGATCCAGTATCGGAATACTAAGGATGGTTCTGTTATTAAAGATGGTCTAGTTACCAGGGATGGTATTTTTTGCAAGTGTTGCAGTGAAGTACTTACAGTTTCTGAGTTCAAGATTCATGGTGGGTTCAGACTAAACCGTCCATGTTTAAATCTTTTTCTGGAATCTGGTAAGGCCTTCTCCTTATGCCAGCTTCAAGCCTGGTCAGCTGAATACAAGTCCAGGAAACGGCGGACTCAAGTGGTGCGAGCTGATGAAAATGATGAAAATGATGATTCTTGCGGACTTTGTGGTGAAGGGGGCGAGCTGATATGCTGTGATAACTGCCCCTCTACTTTTCATCAGGCTTGCTTGTCTCTGCAGGAGCTTCCTGAAGGCAGCTGGTATTGTCCAAACTGCACCTGTTGGATATGTGGTCATTTTGTTACCGACAAAGGGGCTTCAAGTGCTTCTGATGGATTTAAATGTTCGCAGTGTGAGCATAAATATCATGAGGCTTGTCTGAAAGACAAATCCATACATGTACTGGATTCTTGGTTCTGTGAAAGAAGCTGTCAAGAGGTTTACTCAGGTCTTCAGTCTCATGTTGGCTACATTAATCATGTTGTCGATGGCTTTTCATGGACACTTCTTAGATGCATTCGTGATGACCAAAAAGTTCATTCTGCCCAACGGTTATCACTGAAAGCAGAATGCAATACAAGATTAGCTGTTGCTCTTACTGTCATGGAAGAAAGCTTTCTGTCTATGGTGGATCCTAGAACAGGCATAGACATGATACCCCAAGTTTTATACAGTTGGGGGTCAGAGTTTGCTCGTTTGAATTTTCAAGGCTTCTACACTGCAGTCTTAGAGAAAGATGATGTGCTGATATCTGTAGCATCCATCAGGGTGCATGGAACAACAGTTGCAGAGATGCCACTTATTGCAACTTGCAGTCGATACCGTCGCCAGGGAATGTGCCGACGCCTTCTGACTGCTATTGAAGAGATGCTGATATCTTTTAAGGTGGAAAAGCTTGTAATAGCTGCCATTCCAGATTTGGTGGGGACATGGACCGAGGGTTTTGGCTTTATACCTGTGGAAGACAGAGAAAAGCAAAGCTTGAACAAGATCAATTTGATGGTTTTTCCTGGAACGGTTTTACTCAAGAAGCCATTATGTGAAAATGAAACAGCATATAGGCATCCTGGAACATGTCATACATCATCCTTGGAAACGGGAGGATTGAGAAAAGAATGTTGTTCTGAAGAAGAGCCCATGGTTGAGTTTGTGCACTCTGATGATACTTGTGGAAACAAAACTGGTGCTGAAGCAGGAATTGAATTTGTAGAAGGTACTAATTTAGAAGAATGTGATGATGGTAGTAAACTATTTATTGCTGCTGATACTGGACCAGTTGGTACATCAGAAGGAAAAAACAAAGCAACTGAGGTAGGTATTCAATCCAGAGATGCCATTGTTGGGTTTGTACAACGACATGTTGTCCAGTGTTCTGCTAACAAAGCTGGTGTTGAAATGGAAATTAAAAGTAAGAAGTCGGTGGAATCTGAATCGTATGCTGAAACGGGTATAAAGGCTGTAAAGCAATCGGATGGGATATGTCATGCGGACATAGTTGCTGATGCAGTTAGACATGAAGTCGAGAATTTCCAGGAATTTGAAGCTGTAGAGCAATCAAAAACCTGTTGCCAGATTGAAGTAGGCATTGAATCAGAAATAAGGCAGATGACCGGCAAGGATTTGCTGGAATCTGAAGTCGGCGGGGAACCAGAAGGTAGAGTTTTTGAAAGCAATCTTATGCAAGTAGTGGGTGAAGCCAAAACAAGTACTTTGCAGGAGCAATTTTTAAAGCTGTCTTGTGAAGAACCAGCTTCAGCAGTAGAAAATAGCAAGCCGGAAACGGTTACTAATGTTGTTGAATCCTCGGAAATGTATGATGAAACACAGCTTTCTCTGGATGAACAATCGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005911 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009506 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016581 GO:0016740 GO:0016746 GO:0016747 GO:0017053 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030054 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0032993 GO:0034212 GO:0034641 GO:0036211 GO:0042393 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043966 GO:0043971 GO:0043972 GO:0044030 GO:0044154 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061733 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0072553 GO:0080090 GO:0080188 GO:0090304 GO:0090545 GO:0090568 GO:0097159 GO:0099172 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1332

Amino Acids

147.08

Weight (kDa)

5.47

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 689 - 739 1.5e-15 Tify domain binding domain
PHD PF00628 767 - 806 9.9e-08 PHD-finger
IDM1_C PF23209 920 - 1059 2.1e-58 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 2157
Acc36I ACCTGC 1 cut(s) 1120
AccB7I CCANNNNNTGG 2 cut(s) 963, 1705
AciI CCGC 8 cut(s) 312, 743, 883, 967, 2251, 2301, 3629, 3783
AcsI RAATTY 6 cut(s) 279, 1081, 2842, 3344, 3667, 3677
AcuI CTGAAG 6 cut(s) 2412, 2579, 3288, 3351, 3795, 3879
AcyI GRCGYC 1 cut(s) 2986
AfaI GTAC 7 cut(s) 1475, 2112, 2544, 3358, 3424, 3492, 3850
AfiI CCNNNNNNNGG 8 cut(s) 398, 963, 1705, 2247, 2454, 2783, 2971, 3483
AflIII ACRYGT 3 cut(s) 2539, 3215, 3499
AhdI GACNNNNNGTC 2 cut(s) 3503, 3659
AjuI GAANNNNNNNTTGG 2 cut(s) 1546, 1578
AloI GAACNNNNNNTCC 2 cut(s) 2540, 2572
Alw21I GWGCWC 3 cut(s) 66, 1900, 3297
Alw26I GTCTC 4 cut(s) 1199, 1470, 2379, 2604
Alw44I GTGCAC 1 cut(s) 3293
AlwNI CAGNNNCTG 3 cut(s) 1112, 1361, 2123
Ama87I CYCGRG 1 cut(s) 764
AoxI GGCC 3 cut(s) 567, 1257, 2193
ApaLI GTGCAC 1 cut(s) 3293
ApeKI GCWGC 7 cut(s) 544, 860, 1009, 1884, 2397, 3047, 3401
ApoI RAATTY 6 cut(s) 279, 1081, 2842, 3344, 3667, 3677
ArsI GACNNNNNNTTYG 4 cut(s) 475, 507, 1019, 1051
AseI ATTAAT 3 cut(s) 1044, 1236, 2616
Asp700I GAANNNNTTC 1 cut(s) 2757
AspS9I GGNCC 5 cut(s) 287, 567, 1035, 3075, 3413
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 8 cut(s) 107, 590, 654, 989, 1646, 1724, 2324, 3845
AsuNHI GCTAGC 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 764
AvaII GGWCC 4 cut(s) 287, 1035, 3075, 3413
BaeGI GKGCMC 1 cut(s) 3297
BamHI GGATCC 3 cut(s) 50, 814, 2773
BanII GRGCYC 2 cut(s) 1900, 3279
BauI CACGAG 1 cut(s) 109
BbsI GAAGAC 3 cut(s) 495, 2585, 3111
Bbv12I GWGCWC 3 cut(s) 66, 1900, 3297
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 7 cut(s) 556, 847, 996, 1871, 2409, 3034, 3388
BceAI ACGGC 1 cut(s) 2264
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 4 cut(s) 1199, 1470, 2379, 2604
BfmI CTRYAG 9 cut(s) 459, 702, 861, 1010, 1457, 2378, 2862, 2895, 3687
BfuAI ACCTGC 1 cut(s) 1120
BglII AGATCT 2 cut(s) 779, 1060
BisI GCNGC 7 cut(s) 545, 861, 1010, 1885, 2398, 3048, 3402
BlsI GCNGC 7 cut(s) 546, 862, 1011, 1886, 2399, 3049, 3403
BmcAI AGTACT 2 cut(s) 2112, 3850
Bme18I GGWCC 4 cut(s) 287, 1035, 3075, 3413
BmeRI GACNNNNNGTC 2 cut(s) 3503, 3659
BmeT110I CYCGRG 1 cut(s) 764
BmgT120I GGNCC 5 cut(s) 287, 567, 1035, 3075, 3413
BmiI GGNNCC 7 cut(s) 52, 568, 709, 816, 1551, 2775, 3789
BmtI GCTAGC 1 cut(s) 108
BpiI GAAGAC 3 cut(s) 495, 2585, 3111
BplI GAGNNNNNCTC 4 cut(s) 668, 700, 2570, 2602
BpmI CTGGAG 4 cut(s) 153, 815, 1313, 1490
Bpu10I CCTNAGC 1 cut(s) 753
BpuEI CTTGAG 2 cut(s) 2241, 3152
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 2986
BsaI GGTCTC 1 cut(s) 1470
BsaXI ACNNNNNCTCC 2 cut(s) 1194, 1224
Bsc4I CCNNNNNNNGG 8 cut(s) 398, 963, 1705, 2247, 2454, 2783, 2971, 3483
Bse118I RCCGGY 1 cut(s) 3752
Bse3DI GCAATG 2 cut(s) 1592, 1927
Bse8I GATNNNNATC 1 cut(s) 843
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 8 cut(s) 398, 963, 1705, 2247, 2454, 2783, 2971, 3483
BseMI GCAATG 2 cut(s) 1592, 1927
BseRI GAGGAG 2 cut(s) 260, 1684
BseSI GKGCMC 1 cut(s) 3297
BseXI GCAGC 7 cut(s) 556, 847, 996, 1871, 2409, 3034, 3388
BseYI CCCAGC 4 cut(s) 1420, 1444, 1698, 1997
BsgI GTGCAG 3 cut(s) 619, 1021, 2401
BshFI GGCC 3 cut(s) 569, 1259, 2195
BsiHKAI GWGCWC 3 cut(s) 66, 1900, 3297
BsiHKCI CYCGRG 1 cut(s) 764
BsiSI CCGG 3 cut(s) 302, 3753, 3917
BslFI GGGAC 1 cut(s) 3082
BslI CCNNNNNNNGG 8 cut(s) 398, 963, 1705, 2247, 2454, 2783, 2971, 3483
BsmAI GTCTC 4 cut(s) 1199, 1470, 2379, 2604
BsmFI GGGAC 1 cut(s) 3082
BsmI GAATGC 2 cut(s) 2658, 2717
BsnI GGCC 3 cut(s) 569, 1259, 2195
Bso31I GGTCTC 1 cut(s) 1470
BsoBI CYCGRG 1 cut(s) 764
Bsp1286I GDGCHC 4 cut(s) 66, 1900, 3279, 3297
Bsp1407I TGTACA 1 cut(s) 3490
Bsp19I CCATGG 1 cut(s) 3279
BspACI CCGC 8 cut(s) 312, 743, 883, 967, 2251, 2301, 3629, 3783
BspANI GGCC 3 cut(s) 569, 1259, 2195
BspHI TCATGA 1 cut(s) 2509
BspLI GGNNCC 7 cut(s) 52, 568, 709, 816, 1551, 2775, 3789
BspMAI CTGCAG 5 cut(s) 865, 1014, 1461, 2382, 2866
BspMI ACCTGC 1 cut(s) 1120
BspOI GCTAGC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 3267
BspTNI GGTCTC 1 cut(s) 1470
BsrDI GCAATG 2 cut(s) 1592, 1927
BsrFI RCCGGY 1 cut(s) 3752
BsrGI TGTACA 1 cut(s) 3490
BssAI RCCGGY 1 cut(s) 3752
BssNI GRCGYC 1 cut(s) 2986
BssSI CACGAG 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 3231, 3279
Bst2BI CACGAG 1 cut(s) 109
Bst6I CTCTTC 3 cut(s) 190, 3000, 3267
BstACI GRCGYC 1 cut(s) 2986
BstAPI GCANNNNNTGC 1 cut(s) 2100
BstAUI TGTACA 1 cut(s) 3490
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 8 cut(s) 106, 549, 1645, 2210, 2268, 2324, 2368, 3914
BstDSI CCRYGG 1 cut(s) 3279
BstEII GGTNACC 2 cut(s) 1604, 1634
BstENI CCTNNNNNAGG 2 cut(s) 396, 2781
BstMAI GTCTC 4 cut(s) 1199, 1470, 2379, 2604
BstMWI GCNNNNNNNGC 6 cut(s) 650, 2100, 2225, 2465, 2497, 3524
BstNSI RCATGY 4 cut(s) 1706, 2543, 3219, 3503
BstPI GGTNACC 2 cut(s) 1604, 1634
BstSFI CTRYAG 9 cut(s) 459, 702, 861, 1010, 1457, 2378, 2862, 2895, 3687
BstSLI GKGCMC 1 cut(s) 3297
BstV1I GCAGC 7 cut(s) 556, 847, 996, 1871, 2409, 3034, 3388
BstV2I GAAGAC 3 cut(s) 495, 2585, 3111
BstX2I RGATCY 8 cut(s) 25, 50, 308, 779, 814, 1060, 1147, 2773
BstXI CCANNNNNNTGG 1 cut(s) 697
BstYI RGATCY 8 cut(s) 25, 50, 308, 779, 814, 1060, 1147, 2773
BsuRI GGCC 3 cut(s) 569, 1259, 2195
BtgI CCRYGG 1 cut(s) 3279
BtsI GCAGTG 3 cut(s) 2110, 2498, 2859
BtsIMutI CAGTG 8 cut(s) 199, 486, 1606, 2110, 2498, 2699, 2859, 3515
BveI ACCTGC 1 cut(s) 1120
Cac8I GCNNGC 8 cut(s) 106, 549, 1645, 2210, 2268, 2324, 2368, 3914
CaiI CAGNNNCTG 3 cut(s) 1112, 1361, 2123
CciI TCATGA 1 cut(s) 2509
Cfr10I RCCGGY 1 cut(s) 3752
Cfr13I GGNCC 5 cut(s) 287, 567, 1035, 3075, 3413
CseI GACGC 1 cut(s) 2994
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 7 cut(s) 1474, 2111, 2543, 3357, 3423, 3491, 3849
CviQI GTAC 7 cut(s) 1474, 2111, 2543, 3357, 3423, 3491, 3849
DraI TTTAAA 4 cut(s) 1762, 2169, 2482, 3870
DrdI GACNNNNNNGTC 1 cut(s) 2157
DriI GACNNNNNGTC 2 cut(s) 3503, 3659
DseDI GACNNNNNNGTC 1 cut(s) 2157
Eam1104I CTCTTC 3 cut(s) 190, 3000, 3267
Eam1105I GACNNNNNGTC 2 cut(s) 3503, 3659
EarI CTCTTC 3 cut(s) 190, 3000, 3267
EciI GGCGGA 2 cut(s) 898, 2266
Ecl136II GAGCTC 1 cut(s) 1898
Eco130I CCWWGG 2 cut(s) 3231, 3279
Eco147I AGGCCT 1 cut(s) 2195
Eco24I GRGCYC 2 cut(s) 1900, 3279
Eco31I GGTCTC 1 cut(s) 1470
Eco32I GATATC 2 cut(s) 2892, 3018
Eco47I GGWCC 4 cut(s) 287, 1035, 3075, 3413
Eco53kI GAGCTC 1 cut(s) 1898
Eco57I CTGAAG 6 cut(s) 2412, 2579, 3288, 3351, 3795, 3879
Eco88I CYCGRG 1 cut(s) 764
Eco91I GGTNACC 2 cut(s) 1604, 1634
EcoICRI GAGCTC 1 cut(s) 1898
EcoNI CCTNNNNNAGG 2 cut(s) 396, 2781
EcoO65I GGTNACC 2 cut(s) 1604, 1634
EcoRV GATATC 2 cut(s) 2892, 3018
EcoT14I CCWWGG 2 cut(s) 3231, 3279
EcoT22I ATGCAT 2 cut(s) 1592, 2660
EcoT38I GRGCYC 2 cut(s) 1900, 3279
ErhI CCWWGG 2 cut(s) 3231, 3279
FalI AAGNNNNNCTT 4 cut(s) 1546, 1578, 3107, 3139
FaqI GGGAC 1 cut(s) 3082
FauI CCCGC 1 cut(s) 3776
Fnu4HI GCNGC 7 cut(s) 545, 861, 1010, 1885, 2398, 3048, 3402
FriOI GRGCYC 2 cut(s) 1900, 3279
Fsp4HI GCNGC 7 cut(s) 545, 861, 1010, 1885, 2398, 3048, 3402
GluI GCNGC 7 cut(s) 545, 861, 1010, 1885, 2398, 3048, 3402
GsaI CCCAGC 4 cut(s) 1424, 1448, 1702, 2001
GsuI CTGGAG 4 cut(s) 153, 815, 1313, 1490
HaeIII GGCC 3 cut(s) 569, 1259, 2195
HapII CCGG 3 cut(s) 302, 3753, 3917
HgaI GACGC 1 cut(s) 2994
Hin1I GRCGYC 1 cut(s) 2986
HindIII AAGCTT 4 cut(s) 960, 2755, 3035, 3121
HpaII CCGG 3 cut(s) 302, 3753, 3917
HphI GGTGA 8 cut(s) 107, 590, 654, 989, 1646, 1724, 2324, 3845
Hpy166II GTNNAC 4 cut(s) 980, 2584, 3295, 3389
Hpy8I GTNNAC 4 cut(s) 980, 2584, 3295, 3389
Hpy99I CGWCG 2 cut(s) 2970, 2988
HpyCH4IV ACGT 2 cut(s) 588, 640
HpyF10VI GCNNNNNNNGC 6 cut(s) 650, 2100, 2225, 2465, 2497, 3524
HpySE526I ACGT 2 cut(s) 588, 640
Hsp92I GRCGYC 1 cut(s) 2986
LguI GCTCTTC 1 cut(s) 3267
LmnI GCTCC 4 cut(s) 1318, 1562, 2383, 3859
Lsp1109I GCAGC 7 cut(s) 556, 847, 996, 1871, 2409, 3034, 3388
MabI ACCWGGT 1 cut(s) 391
MaeII ACGT 2 cut(s) 588, 640
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 8 cut(s) 25, 50, 308, 779, 814, 1060, 1147, 2773
MhlI GDGCHC 4 cut(s) 66, 1900, 3279, 3297
MlyI GAGTC 6 cut(s) 164, 509, 575, 797, 920, 2248
MmeI TCCRAC 2 cut(s) 753, 2405
Mph1103I ATGCAT 2 cut(s) 1592, 2660
MroXI GAANNNNTTC 1 cut(s) 2757
MslI CAYNNNNRTG 5 cut(s) 36, 1786, 2792, 2909, 3300
MspA1I CMGCKG 2 cut(s) 2228, 2400
MspI CCGG 3 cut(s) 302, 3753, 3917
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 2 cut(s) 2658, 2717
MwoI GCNNNNNNNGC 6 cut(s) 650, 2100, 2225, 2465, 2497, 3524
NciI CCSGG 1 cut(s) 302
NcoI CCATGG 1 cut(s) 3279
NheI GCTAGC 1 cut(s) 104
NlaIV GGNNCC 7 cut(s) 52, 568, 709, 816, 1551, 2775, 3789
NmuCI GTSAC 6 cut(s) 95, 481, 578, 715, 947, 1634
NsiI ATGCAT 2 cut(s) 1592, 2660
NspI RCATGY 4 cut(s) 1706, 2543, 3219, 3503
PagI TCATGA 1 cut(s) 2509
PceI AGGCCT 1 cut(s) 2195
PciI ACATGT 3 cut(s) 2539, 3215, 3499
PciSI GCTCTTC 1 cut(s) 3267
PctI GAATGC 2 cut(s) 2658, 2717
PdmI GAANNNNTTC 1 cut(s) 2757
PflMI CCANNNNNTGG 2 cut(s) 963, 1705
PfoI TCCNGGA 5 cut(s) 300, 2240, 3151, 3208, 3672
PkrI GCNGC 7 cut(s) 546, 862, 1011, 1886, 2399, 3049, 3403
PleI GAGTC 6 cut(s) 163, 508, 575, 797, 919, 2248
PpsI GAGTC 6 cut(s) 163, 508, 575, 797, 919, 2248
Ppu21I YACGTR 1 cut(s) 641
PscI ACATGT 3 cut(s) 2539, 3215, 3499
PshBI ATTAAT 3 cut(s) 1044, 1236, 2616
PsiI TTATAA 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 1900
PspEI GGTNACC 2 cut(s) 1604, 1634
PspFI CCCAGC 4 cut(s) 1420, 1444, 1698, 1997
PspN4I GGNNCC 7 cut(s) 52, 568, 709, 816, 1551, 2775, 3789
PspPI GGNCC 5 cut(s) 287, 567, 1035, 3075, 3413
PsrI GAACNNNNNNTAC 4 cut(s) 1959, 1991, 3205, 3237
PstI CTGCAG 5 cut(s) 865, 1014, 1461, 2382, 2866
PstNI CAGNNNCTG 3 cut(s) 1112, 1361, 2123
PsuI RGATCY 8 cut(s) 25, 50, 308, 779, 814, 1060, 1147, 2773
PvuII CAGCTG 2 cut(s) 2228, 2400
RsaI GTAC 7 cut(s) 1475, 2112, 2544, 3358, 3424, 3492, 3850
RsaNI GTAC 7 cut(s) 1474, 2111, 2543, 3357, 3423, 3491, 3849
RseI CAYNNNNRTG 5 cut(s) 36, 1786, 2792, 2909, 3300
SacI GAGCTC 1 cut(s) 1900
SapI GCTCTTC 1 cut(s) 3267
SatI GCNGC 7 cut(s) 545, 861, 1010, 1885, 2398, 3048, 3402
Sau96I GGNCC 5 cut(s) 287, 567, 1035, 3075, 3413
ScaI AGTACT 2 cut(s) 2112, 3850
SchI GAGTC 6 cut(s) 164, 509, 575, 797, 920, 2248
SduI GDGCHC 4 cut(s) 66, 1900, 3279, 3297
SexAI ACCWGGT 1 cut(s) 391
SfcI CTRYAG 9 cut(s) 459, 702, 861, 1010, 1457, 2378, 2862, 2895, 3687
SinI GGWCC 4 cut(s) 287, 1035, 3075, 3413
SmiI ATTTAAAT 1 cut(s) 2482
SmiMI CAYNNNNRTG 5 cut(s) 36, 1786, 2792, 2909, 3300
SmlI CTYRAG 2 cut(s) 2256, 3167
SmoI CTYRAG 2 cut(s) 2256, 3167
SseBI AGGCCT 1 cut(s) 2195
SsiI CCGC 8 cut(s) 312, 743, 883, 967, 2251, 2301, 3629, 3783
SspI AATATT 2 cut(s) 1042, 1576
SstI GAGCTC 1 cut(s) 1900
StuI AGGCCT 1 cut(s) 2195
StyI CCWWGG 2 cut(s) 3231, 3279
SwaI ATTTAAAT 1 cut(s) 2482
TaiI ACGT 2 cut(s) 591, 643
TaqI TCGA 7 cut(s) 498, 506, 1629, 1861, 2628, 2959, 3663
TaqII GACCGA 1 cut(s) 3092
TatI WGTACW 4 cut(s) 2110, 2542, 3490, 3848
TscAI CASTG 8 cut(s) 199, 486, 1606, 2110, 2498, 2706, 2866, 3515
TseFI GTSAC 6 cut(s) 95, 481, 578, 715, 947, 1634
TseI GCWGC 7 cut(s) 544, 860, 1009, 1884, 2397, 3047, 3401
Tsp45I GTSAC 6 cut(s) 95, 481, 578, 715, 947, 1634
TspRI CASTG 8 cut(s) 199, 486, 1606, 2110, 2498, 2706, 2866, 3515
Van91I CCANNNNNTGG 2 cut(s) 963, 1705
VneI GTGCAC 1 cut(s) 3293
VpaK11BI GGWCC 4 cut(s) 287, 1035, 3075, 3413
VspI ATTAAT 3 cut(s) 1044, 1236, 2616
XagI CCTNNNNNAGG 2 cut(s) 396, 2781
XapI RAATTY 6 cut(s) 279, 1081, 2842, 3344, 3667, 3677
XbaI TCTAGA 4 cut(s) 272, 1784, 1871, 1892
XceI RCATGY 4 cut(s) 1706, 2543, 3219, 3503
XcmI CCANNNNNNNNNTGG 3 cut(s) 1706, 2542, 3058
XmnI GAANNNNTTC 1 cut(s) 2757
ZrmI AGTACT 2 cut(s) 2112, 3850
Zsp2I ATGCAT 2 cut(s) 1592, 2660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.